BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487361
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 2266 0.0
AT3G55970.1 | Symbols: ATJRG21, JRG21 | jasmonate-regulated gen... 257 2e-67
> AT5G05600.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:1672120-1674739
FORWARD LENGTH=1399
Length=1399
Score = 2266 bits (1227), Expect = 0.0
Identities = 1334/1384 (96%), Gaps = 14/1384 (1%)
Strand=Plus/Plus
Query 1 AGCCGATTTCTAGATTCTCCTCCACCACCATTTTACCCTTCTTTTAAATTCCTTCCTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AGCCGATTTCTAGATTCTCCTCCACCACCATTTTACCCTTCTTTTAAATTCCTTCCTTCA 60
Query 61 ATCAAAATTATAATTGTTTCTCACAAACCTCTTCTTTATAT-CTAAAACGTCTCACATGA 119
|||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 61 ATCAAAATTAGAATTATTTCT--CAAACCTCTTCTTTATATACTAAAACGTCTCACATGA 118
Query 120 GCAAAAAGAATAAACT-GAAACAAAGAAGATGAACAAGAACAACAAGATGGATGTTAAGA 178
||| ||||||||| | ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 119 ACAAGAAGAATAAA-TAGAAACAAAGAAGATGAACAAG---AACAAGATTGATGTTAAGA 174
Query 179 TCGAGACGAAGAAAGGATCGATGGATGAGTGGCCTGAGCCAATCGTCCGAGTCCAGTCCT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCGAGACGAAGAAAGGATCGATGGATGAGTGGCCTGAGCCAATCGTCCGAGTCCAGTCCT 234
Query 239 TAGCCGAGAGCAACCTCTCCTCTCTCCCCGACCGCTACATCAAACCAGCATCTCTACGCC 298
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 235 TAGCCGAGAGCAACCTCTCCTCTCTCCCCGACCGTTACATCAAACCAGCGTCTCTACGCC 294
Query 299 CCACCACGACCGAAGACGCTCCTGCCGCGACCAACATCCCAATCATAGACCTTGAAGGGC 358
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 295 CCACCACGACCGAAGACGCTCCTACCGCGACCAACATCCCAATCATAGACCTTGAAGGAC 354
Query 359 TCTTCTCGGAAGAAGGGTTGTCTGATGACGTCATCATGGCTCGGATATCGGAGGCTTGCC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCTTCTCGGAAGAAGGGTTGTCTGATGACGTCATCATGGCTCGGATATCGGAGGCTTGCC 414
Query 419 GTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCGGAGTTGATGGACGCGG 478
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCGGAGCTGATGGACGCGG 474
Query 479 CTAGAGAGAATTGGAGAGAGTTTTTCCATTTGCCGGTGAATGCAAAAGAGACTTACTCGA 538
|||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
Sbjct 475 CTAGGGAGAATTGGAGAGAGTTTTTCCATATGCCGGTTAATGCCAAAGAGACTTACTCAA 534
Query 539 ACTCACCAAGAACCTACGAAGGCTATGGAAGCAGGTTAGGTGTTGAGAAAGGAGCAAGTC 598
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 535 ACTCACCAAGAACCTACGAAGGCTATGGAAGTAGACTAGGTGTTGAGAAAGGAGCAAGTC 594
Query 599 TTGATTGGAGTGATTATTACTTTCTTCATCTTCTTCCTCATCATTTGAAAGACTTCAACA 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 TTGATTGGAGTGATTATTACTTTCTCCATCTTCTTCCTCATCATTTGAAAGACTTCAACA 654
Query 659 AGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATCGATGAATACGGCGAAGAGCTAG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATCGATGAATACGGCGAAGAGCTAG 714
Query 719 TGAAGCTGAGTGGGAGAATCATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGATA 778
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGAAGCTAAGTGGGAGAATTATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGATA 774
Query 779 AGTTTCAAGAAGCATTTGGAGGTGAAAACATAGGGGCCTGTTTAAGGGTTAATTATTACC 838
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 775 AGTTTCAAGAAGCATTTGGAGGTGAAAACATTGGGGCGTGTTTGAGGGTTAATTATTACC 834
Query 839 CAAAATGCCCTCGACCGGAACTGGCTCTTGGTCTCTCTCCACACTCCGATCCTGGCGGTA 898
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAAAATGCCCTCGACCGGAGCTGGCTCTTGGTCTCTCTCCACACTCCGATCCTGGCGGTA 894
Query 899 TGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGATGACACGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGATGACACGT 954
Query 959 GGATCACCGTCAAGCCTCATCCCCATGCTTTCATCGTCAATATTGGTGATCAAATACAGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGATCACCGTCAAGCCTCATCCCCATGCTTTCATCGTCAATATTGGTGATCAAATACAGA 1014
Query 1019 TACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAGTGAACTCGGACAAAG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1015 TACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAGTGAACTCGGACAAGG 1074
Query 1079 AGAGAGTTTCACTTGCCTTCTTCTACAACCCTAAAAGCGATATTCCGATCCAACCGTTAC 1138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1075 AGAGAGTTTCACTTGCCTTCTTCTACAATCCTAAAAGCGATATTCCGATCCAACCATTAC 1134
Query 1139 AAGAACTTGTATCAACTCATAATCCTCCTTTATATCCTCCCATGACCTTTGATCAGTATA 1198
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1135 AAGAACTTGTATCAACTCATAATCCTCCTTTATACCCTCCCATGACCTTTGATCAGTATA 1194
Query 1199 GACTCTTTATCAGAACTCAAGGTCCACAAGGCAAATCCCATGTTGAATCTCATATTTCTC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GACTCTTTATCAGAACTCAAGGTCCACAAGGCAAATCCCATGTTGAATCTCATATTTCTC 1254
Query 1259 CTCGTTGATTGttttttttttCTT-CTTCCCGCAAAGAAAAATTAATGTTTTGTTATTTT 1317
|||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||
Sbjct 1255 CTCGTTGATTGTTTTTCTTTTATTTCTTCCCTTAAAGAAAAATTAATGTTTTGTTATTTT 1314
Query 1318 CATTATACATTATTACGCCTGACTTGTATATGTGTACAATCATTTATATTTTGAATTTTC 1377
| || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 --T-ATG-AT-ATTACGTCTGACTTGTATATGTGTACAATCATTTATATTTTGAATTTTC 1369
Query 1378 AAAG 1381
||||
Sbjct 1370 AAAG 1373
> AT3G55970.1 | Symbols: ATJRG21, JRG21 | jasmonate-regulated gene
21 | chr3:20766735-20769324 REVERSE LENGTH=1387
Length=1387
Score = 257 bits (139), Expect = 2e-67
Identities = 461/609 (76%), Gaps = 52/609 (9%)
Strand=Plus/Plus
Query 549 AACCTACGAAGGCTATGGAAGCAGGTTAGGTGTTGAGAAA-GGAGCAAGTCTTGATTGGA 607
||| ||||| || ||||||||| | |||| || || ||| || || | |||||||||||
Sbjct 429 AACTTACGAGGGATATGGAAGCCGACTAGGCGTAGA-AAAGGGTGCTATTCTTGATTGGA 487
Query 608 GTGATTATTACTT-TCTTCATCT-TCTTCC-TCATCATTTGAAAGACTT-CAACAAGTGG 663
| || || || || ||| ||| | | || || || |||||| || || || |||||||
Sbjct 488 GCGACTACTA-TTATCTCCAT-TACCAGCCTTCGTC-TTTGAAGGA-TTACACCAAGTGG 543
Query 664 CCTTCTTTTCCTCCCACCA-T-AAGAGAAGTGA-TCGATGAATACGGCGAA-GAGCTAGT 719
||||| || ||| | || | ||||| | | | || || || || || || | ||
Sbjct 544 CCTTCCTTGCCT--CTTCATTGCCGAGAAAT-ATTGGAGGATTATTGC-AAGGAAATGGT 599
Query 720 GAAGCTGAGTGGGAGAA--TCATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGAT 777
||| || | || ||||| | |||| | ||||| | |||||||||| || |||| ||
Sbjct 600 GAAACT-A-TGCGAGAACTTGATGAAAATCTTATCCAAAAACTTGGGATTACAAGAAGA- 656
Query 778 AAG-TTTCAAGAA-GCATTTGGAGGTGAAA-A--CAT-AGG-GGCCTGTTTAAGGGTTAA 830
|| ||||| || |||||||| ||| ||| | || ||| || ||||||||||||||
Sbjct 657 CAGACTTCAA-AATGCATTTGGTGGT-AAAGAGGAATCAGGTGG-ATGTTTAAGGGTTAA 713
Query 831 TTATTACCCAAAATGCCCTCGACCGGAACTGGCTCTTGGTCTCTCTCCACACTCCGATCC 890
|||||||||||||||||||| |||||| ||| |||| ||| ||||||| ||||| |||||
Sbjct 714 TTATTACCCAAAATGCCCTCAACCGGAGCTGACTCTCGGTATCTCTCCGCACTCTGATCC 773
Query 891 TGGCGGTATGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGA 950
|||||| ||||||||||||| |||||||| |||||| | |||| ||||| ||| ||
Sbjct 774 CGGCGGTTTGACCATTCTCTTGCCGGACGAACAAGTCGCCAGTCTTCAGGTCCGTG--GA 831
Query 951 T--GAC-ACG-T-GGATCACCGTC-AAGCCT-CATCCCCATGCTTTCATCGTCAATATTG 1003
| ||| ||| | ||||||| ||| || || | ||| |||||||||||||| || || |
Sbjct 832 TCCGACGACGCTTGGATCACAGTCGAA-CCAGC-TCCTCATGCTTTCATCGTTAACATGG 889
Query 1004 GTGATCAAATACAGATACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAG 1063
|||| ||||| ||||| || ||||| |||| |||||| || || || || |||||||| |
Sbjct 890 GTGACCAAATTCAGATGCTGAGCAATTCAATATACAAAAGCGTAGAACACAGAGTGATCG 949
Query 1064 TGAACTCGGACAAA-GAGAGAGTT-TCACTTGCC-TTCTTCTACAACCCTAAAAG-CGAT 1119
||||| | || ||| ||||| ||| ||| ||| | || ||||||||||| ||| | | ||
Sbjct 950 TGAACCCTGA-AAATGAGAG-GTTGTCA-TTGGCATTTTTCTACAACCC-AAAGGGCAAT 1005
Query 1120 ATTCCGATC 1128
|||| |||
Sbjct 1006 GTTCCTATC 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5