BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487363
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05610.1 | Symbols: AL1 | alfin-like 1 | chr5:1676991-167910... 1496 0.0
AT3G11200.1 | Symbols: AL2 | alfin-like 2 | chr3:3508043-351062... 728 0.0
> AT5G05610.1 | Symbols: AL1 | alfin-like 1 | chr5:1676991-1679104
REVERSE LENGTH=1228
Length=1228
Score = 1496 bits (810), Expect = 0.0
Identities = 866/893 (97%), Gaps = 4/893 (0%)
Strand=Plus/Plus
Query 3 GTCTATCTCTACCTCTCTTGTCCGTGCGCATCGGATTTTGGAAACCATTGATGCAGACCT 62
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 GTCTCTCTCTATCTCTCTTGTCCGTGCGCATCGGATTTTGGAAACCATTGATGCAGACCT 68
Query 63 CAATCCATCTCTAACACCACTGATCTATCTACTTAGGTCTTCTCTAACGATACTCGTAAC 122
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 69 CAATCCATCTCTAACACCACTGATCTATCTACTTAGGTCTTCTCTAACAATACTTGTAA- 127
Query 123 TTTT-TTAC--TTTGCTTCTTCCCTTACTACATCGATGGCCGCTGAGTCTTCTAACCCTC 179
|||| || | |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 128 TTTTCTTTCTTTTTGCTTCTTCCGTCACTACATCTATGGCCGCTGAGTCTTCTAACCCTC 187
Query 180 GCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCTCCGGTTTTCTTCGAGCTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCTCCGGTTTTCTTCGAGCTC 247
Query 240 TCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGAGAATCTGTGTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGAGAATCTGTGTT 307
Query 300 TGTACGGACACCCAAATGGGACATGGGAAGTGAATCTTCCGGCGGAGGAAGTGCCTCCGG 359
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 308 TGTACGGACACCCGAATGGGACATGGGAAGTGAATCTTCCAGCTGAGGAAGTGCCTCCGG 367
Query 360 AGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCAAGAGATGGTATGCAGCGTAAAGATT 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 368 AGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGTATGCAGCGTAAAGATT 427
Query 420 GGCTCTCTTTAGTTGCTGTCCACAGTGACTGTTGGTTACTCTCTGTTTCTTCTTACTTCG 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 428 GGCTCTCTTTAGTTGCTGTCCACAGTGATTGTTGGTTACTCTCTGTTTCTTCTTACTTCG 487
Query 480 GCGCTCGCCTTAATCGCAATGAGAGGAAACGCCTATTTAGTCTGATCAACGATCTCCCAA 539
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 488 GCGCTCGTCTTAATCGCAATGAGAGGAAACGTCTATTTAGTCTGATCAACGATCTCCCAA 547
Query 540 CTCTCTTTGAAGTAGTGACGGGTAGGAAGCCCATCAAAGATAATAAACCAAGCATGGATC 599
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 548 CTCTCTTTGAAGTAGTGACGGGTAGGAAACCCATCAAAGACGGTAAACCAAGCATGGATC 607
Query 600 TCGGAAGCAAATCCAGAAACGGCGTTAAGAGATCAATTGAAGGGCAGACAAAGAGCACGC 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 TCGGAAGCAAATCCAGAAACGGCGTAAAGAGATCAATTGAAGGGCAGACAAAGAGCACGC 667
Query 660 CGAAACTAATGGAAGAGAGCTACGAAGATGAAGACGATGAGCATGGAGACACACTCTGTG 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 668 CGAAACTAATGGAAGAGAGCTATGAAGATGAAGACGATGAGCATGGAGACACACTCTGTG 727
Query 720 GAAGTTGTGGAGGAAACTACACAAACGACGAGTTCTGGATATGTTGTGATGTGTGTGAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GAAGTTGTGGAGGAAACTACACAAACGACGAGTTCTGGATATGTTGTGATGTGTGTGAAC 787
Query 780 GTTGGTACCATGGGAAGTGTGTGAAGATAACACCAACCAAAGCAGAGAGCATCAAGCAAT 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 788 GTTGGTACCATGGGAAGTGTGTGAAGATAACACCAGCCAAAGCAGAGAGCATCAAGCAAT 847
Query 840 ACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAGACAGTGAGTGAATGAGTGA 892
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 848 ACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAGACAGTGAGTGAATGAATGA 900
Score = 158 bits (85), Expect = 1e-37
Identities = 113/125 (90%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 921 GTAGTGAGACATGGAGAGAGTCATAAAGACACCACCAGCTGGTTAGAGAACTTCGTCAAC 980
||| |||||||||||||||||||| ||| | ||||||||| ||||||| ||||||||||
Sbjct 1031 GTA-TGAGACATGGAGAGAGTCAT--AGAGA-CACCAGCTGCTTAGAGAGCTTCGTCAAC 1086
Query 981 TTTTGATCAAATATGCCATGTGTTTGTATATGTAGCGACTCTACT--TT-CATTAGTTTA 1037
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 1087 TTTTGATCAAATATGCCATGTGTTTGTATATGTAGCGACTCTACTACTTTCATC-GTTTA 1145
Query 1038 TGTGT 1042
|||||
Sbjct 1146 TGTGT 1150
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1042 TATTCTTATGTAAGGTTGATCTTCATAATCTCTCATATGGTGTTTT 1087
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1183 TATTCTTATGTAAGGTTGATCTTCATAATCTCTCATATGGTATTTT 1228
> AT3G11200.1 | Symbols: AL2 | alfin-like 2 | chr3:3508043-3510627
REVERSE LENGTH=1294
Length=1294
Score = 728 bits (394), Expect = 0.0
Identities = 620/727 (85%), Gaps = 23/727 (3%)
Strand=Plus/Plus
Query 170 TCTAACCCTCGCACCGTCGAAGAGATCTTCAAGGATT-TTAGCGGTCGTCGCT-CCGGTT 227
||||||||||||||||| |||||||||||||| |||| || || |||||| | ||| |
Sbjct 231 TCTAACCCTCGCACCGTTGAAGAGATCTTCAAAGATTATT-CCGCTCGTCG-TGCCGCTC 288
Query 228 TTCTTCGAGCTCTCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGG 287
||||||| |||||| | ||||||||| | || |||||| |||||||||||||| ||
Sbjct 289 TTCTTCGTGCTCTCACTAAAGATGTTGATGATTTTTACTCTCAATGCGATCCGGAAAAGG 348
Query 288 AGAATCTGTGTTTGTACGGACACCCAAATGGGACATGGGAAGTGAATCTTCCGGCGGAGG 347
||||| ||||||||||||||||||| |||| | |||||||||||||||| || || ||||
Sbjct 349 AGAATTTGTGTTTGTACGGACACCCTAATGAGTCATGGGAAGTGAATCTACCAGCAGAGG 408
Query 348 AAGTGCCTCCGGAGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCAAGAGATGGTATGC 407
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 409 AAGTGCCTCCGGAGCTACCTGAGCCTGCTCTTGGTATCAATTTCGCTAGAGATGGTATGC 468
Query 408 AGCGTAAAGATTGGCTCTCT-TTAGTTGCTGTCCACAGTGACTGTTGGTTACTCTCTGTT 466
|| | ||||||||||| ||| || |||||||| |||||||| |||||||| |||||||||
Sbjct 469 AGAGGAAAGATTGGCTTTCTCTT-GTTGCTGTTCACAGTGATTGTTGGTTGCTCTCTGTT 527
Query 467 TCTT-CTTACTTCGGCGCTCGCCTTAATCGCAATGAGAGGAAACGCCTATTTAGTCTGAT 525
|||| || |||| || || || |||||||||||||||||||| || |||| ||||||||
Sbjct 528 TCTTTCT-ACTTTGGAGCCCGTCTTAATCGCAATGAGAGGAAGCGGTTATTCAGTCTGAT 586
Query 526 CAACGATCTCCCAACTCTCTTTGAAGTAGTGACGGGTAGGAA-GCCCATCAAAGATAATA 584
||||||||||||||||||||| || |||||||| |||||||| ||| || ||||| || |
Sbjct 587 CAACGATCTCCCAACTCTCTTCGATGTAGTGACTGGTAGGAAAGCC-ATGAAAGACAACA 645
Query 585 AACCAAGCAT-GGATCTC-GGAAGCAAATCCAGAAACGGCGTTAAGAGATCAATTGAAGG 642
| |||||| | ||| ||| ||||||||||||||||| ||| |||||||||||| || ||
Sbjct 646 AGCCAAGC-TCGGA-CTCAGGAAGCAAATCCAGAAATGGCACTAAGAGATCAATAGACGG 703
Query 643 GCAGACAAAGAGC--A-CGCCGAAACTAATGGAAGAGAGCTACGA--AG-ATGAAGACGA 696
||||||||||||| | | ||||||||||||||||||||||| || || | ||||| ||
Sbjct 704 GCAGACAAAGAGCTCAACACCGAAACTAATGGAAGAGAGCTATGAGGAGGAGGAAGAAGA 763
Query 697 TGA-G--CATGGAGACACACTCTGTGGAAGTTGTGGAGGAAACTACACAAACGACGAGTT 753
|| | ||||||||||| ||||||||||| |||||||| | |||||||| || |||||
Sbjct 764 AGACGAGCATGGAGACACTCTCTGTGGAAGCTGTGGAGGTCATTACACAAATGAGGAGTT 823
Query 754 CTGGATATGTTGTGATGTGTGTGAACGTTGGTACCATGGGAAGTGTGTGAAGATAACACC 813
|||||| || |||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct 824 CTGGATTTGCTGTGATGTTTGTGAACGTTGGTACCATGGAAAATGCGTCAAGATAACTCC 883
Query 814 AACCAAAGCAGAGAGCATCAAGCAATACAAATGCCCTTCTTGCTGCACTAAGAAAGGAAG 873
| |||||||||||||||||||| || |||||||| ||||||| | |||||||||||
Sbjct 884 GGCTAAAGCAGAGAGCATCAAGCAGTATAAATGCCCGCCTTGCTGTGCAAAGAAAGGAAG 943
Query 874 ACAGTGA 880
|||||||
Sbjct 944 ACAGTGA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5