BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487367
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05670.2 | Symbols: | signal recognition particle binding |... 1631 0.0
> AT5G05670.2 | Symbols: | signal recognition particle binding
| chr5:1695730-1698124 REVERSE LENGTH=1113
Length=1113
Score = 1631 bits (883), Expect = 0.0
Identities = 965/1004 (96%), Gaps = 8/1004 (1%)
Strand=Plus/Plus
Query 87 GGTTTTAAACAGCTTGGCAGAAGAAGTGAAACTTGAGAGAAAGAAATGGAGAACTTGGAA 146
|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 102 GGTTTTGAACAGCTTGGCAGAAGAAGTGAAACTTGAGAG--AGTAATGGAGAACTTGGAA 159
Query 147 GATCTGAAAATTCTGGCTGAGCAGTGGTCGCATCAAGGAATTGAATATCTTCAGAAGATA 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 GATCTGAAAATTCTGGCTGAGCAGTGGTCGCATCAAGGAATTGAATATCTTCAGAAGATA 219
Query 207 CCACC-AACTCAGCTGTATGCCGCTATTGGTGTTCTGTTGTTTACAACCATCTTGCTCTT 265
||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 220 CCACCGAA-TCAGCTGTATGCCGCCATTGGTGTTTTGTTGTTTACAACCATCTTGCTCTT 278
Query 266 CCTATCCATTCGCTTGGTCAGACGTACCAAATCCAACACTGTACTCCTTTCTGGGCTGAG 325
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CCTATCCATTCGCCTGGTCAGACGTACCAAATCCAACACTGTACTCCTTTCTGGGCTGAC 338
Query 326 CGGAAGTGGAAAGACTGTGCTCTTTTACCAACTCCGAGATGGATCGTCGCATCAGGGCAC 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 CGGAAGTGGAAAGACTGTGCTCTTTTACCAACTCCGAGATGGATCGTCGCATCAGGGCAC 398
Query 386 TGTAACATCAATGGAACCAAATGAAGGCACTTTTGTTCTTCACAGTGAAAACACTAAGAA 445
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 399 TGTAACATCAATGGAACCAAATGAAGGCACTTTTGTTCTTCACAGTGAAAATACTAAGAA 458
Query 446 AGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGACCCAA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGACCCAA 518
Query 506 GCTAGAAGAATTCTTGCCTCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGGAGTT 565
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTAGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGGAGTT 578
Query 566 CCTCCCAAACTGCCGTGCAGCTTCAGAGTACCTATACGACATTTTGACCAATGCGAATGT 625
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 579 CCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATACGAGATTCTGACCAATGCGAATGT 638
Query 626 TGTCAAGAAAAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTGCACA 685
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TGTCAAGAAGAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTGCACA 698
Query 686 CACCAAGGAGTTTATCCGGAAGCAGATGGAGAAAGAAATTGAGAAACTGAGGGCTTCAAG 745
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 699 CACCAAGGAGTTTATCCGGAAGCAAATGGAGAAAGAAATTGAGAAACTGAGGGCTTCAAG 758
Query 746 GAGTGCAGTCTCTACAGCTGATATAGCGAATGACTTCACCATTGGGATCGAGGGAGAAGT 805
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 759 GAGTGCAGTCTCTACTGCTGATATAGCGAATGACTTCACCATTGGAATTGAGGGAGAAGT 818
Query 806 GTTCTCCTTCTCGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGG 865
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGG 878
Query 866 AGAAACCGTACAGATCGAAGACTTCATTCGGGAATACATCAAGCCATGAGCTCCAACGTG 925
||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 879 AGAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGAGCTCCAACATG 938
Query 926 CATTCATAGATTGAATCTACCACAAGATTCTTATGCTTTGCTCTGTGACTTTGATTTGAG 985
| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 939 CCTTCATAGATTGAATCTACCACAAGTTTCTTATGCTTTGGGCTGTGACTTTGATTTGAG 998
Query 986 TTTAGAGATCCCTTTTGTATATGAGATCTTTGGAT--TT-AGGGAGTTCAAAACTGAGTA 1042
||||||||||| ||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 999 TTTAGAGATCC-TTTTGTATATGAGATCTTTGGATGATTTAGGGTGTTCAAAACTGAGTA 1057
Query 1043 GCTGTATTTTCGAGTTAGATAATTTGTTTTTAATCAGAGTGATT 1086
||||||||||||||||||||||| |||||| |||| || |||||
Sbjct 1058 GCTGTATTTTCGAGTTAGATAATCTGTTTTAAATCGGAATGATT 1101
Score = 106 bits (57), Expect = 5e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 30 CCGTGTTCTTCTCCGCTTCCACCGTCGTTGTATTTGTCTTCCGCCTCCTCTCCCATCGGT 89
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CCGTGTTCTTCTCCGCTTCCACCGTCGTTGTATTCGTCTTCCGCCTCCTCTCCCATCGGT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5