BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487368 Length=2675 Score E Sequences producing significant alignments: (Bits) Value AT5G05680.1 | Symbols: MOS7 | nuclear pore complex protein-rela... 4139 0.0 > AT5G05680.1 | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698270-1702645 FORWARD LENGTH=2698 Length=2698 Score = 4139 bits (2241), Expect = 0.0 Identities = 2526/2663 (95%), Gaps = 22/2663 (1%) Strand=Plus/Plus Query 22 TCTGCATCGCCGGCCGACGAACACAGATACACTTGAGTGAAAGAGAGAAAGTATGAGAA- 80 |||||||| || |||||||| ||||||||||| |||| || ||||||||||| || Sbjct 49 TCTGCATCTCCTTCCGACGAAAACAGATACACTCGAGT----GA-AGAAAGTATGA-AAT 102 Query 81 TTAACTTCCAGGAGCCAGAGGATACGCCAGATTCACGGCGGTCCCCGACGCCTAAAGAGC 140 ||||||| | ||| |||||||| | ||||||||||| || || |||||||| ||||||| Sbjct 103 TTAACTTTAACGAGACAGAGGATGCACCAGATTCACGACGATCTCCGACGCCCAAAGAGC 162 Query 141 CGGTTCGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 200 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 CGGTTAGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 222 Query 201 ATGAACCCACCCCGTCGCAGCGGTTTCCGAGGAATTTCATGGCTTGGGACGGAGACTCGC 260 |||||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 223 ATGAACCCGCCGTGTCGCAGCTGTTTCCGAGAAATTTCATGGCTTGGGACGGAGACTCGC 282 Query 261 GAC-TATACTACTGGGATTCTAGACGATATCTTCTACATCGATTATCTCTGCGCTTGGGT 319 | | |||||||||||||||| ||||||||||| || || ||||||||||||||||||||| Sbjct 283 G-CGTATACTACTGGGATTCGAGACGATATCTCCTTCACCGATTATCTCTGCGCTTGGGT 341 Query 320 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 401 Query 380 CAGATGACAATTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 439 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 CAGGTGACATTTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 461 Query 440 GCCGGCTCAGATGGAATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGGTAGAAGAT 499 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 462 GCCGGCTCAGATGGGATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGATAGAAGAC 521 Query 500 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTGGTGACAGTGCC 559 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 522 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTAGTGACAGTGCC 581 Query 560 ATAAACTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 619 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 ATAACCTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 641 Query 620 TCAGATGCAGTTTTCAGGCTTTTCGATTTATCTTAC-GATGCTGAGCTACCAGAGCAAGA 678 || |||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||| Sbjct 642 TCGGATGCAGTTTTCAGGCTTTTCGATTTGTCTT-CAGATACTGAGCTACCAGAGCAAGA 700 Query 679 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 701 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 760 Query 739 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTTTATTATTCAC 798 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 761 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTATATTATTCAC 820 Query 799 TGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 858 ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 821 TGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 880 Query 859 ATC-GATAATGGAGATTTACCACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCGA 917 ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 881 ATCCG-TAATGGAGATTTACAACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCG- 938 Query 918 TT-GCAGTGAGCAACTCCAGTCTGGCAATTGAATGGTTGGAAGCTACATTTCCAGATTTG 976 || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 939 TTAGCAGTTAGCAACTCCAGTCTGGCTATTGAATGGTTGGAAGCTACATTTCCAGATTTG 998 Query 977 ACTGAACAAGGAACCAGAGGTGAAAATATATTGGTCGTGAAAGCTCATCCTTATGCTTTG 1036 ||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 999 ACTGAGCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTG 1058 Query 1037 CTTGACGCATCATTAGCTTTACAGGGCCCTTTATATAAAGCATCTAATGGTGACGGAGAT 1096 |||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1059 CTTGACGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGAT 1118 Query 1097 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGGCGGGCAGTGAGTCTATTATATAAT 1156 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1119 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAAT 1178 Query 1157 CTTGTCAGCAAAGATTCGATCCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1216 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1179 CTTGTTAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1238 Query 1217 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1239 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1298 Query 1277 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAGGTGAGCTT 1336 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1299 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAAGTGAGCTT 1358 Query 1337 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCGCCGCCA 1396 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1359 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCACCACCA 1418 Query 1397 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTTCCCACACGGCGTGAAGGTGGCTCTCTT 1456 |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1419 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTCCCCAAAATGCGTGAAGGTGGCTCTCTT 1478 Query 1457 GTTACCTTGTTTGCTGATTCTCTTTTGCCAGAACGAATATACTCCCTCCACGACGGTGGC 1516 ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 1479 GTTACCTTGTTTGCTGACTCCCTTTTGCCAGAACGAATATACTCCCTTCACGACGGTGGC 1538 Query 1517 ATTGATTCAACAGTCTTACACTCTCTTCCCTTTACAAGTCAGGCCACTGGAAAAGATGAA 1576 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1539 ATTGATTCAACAGTCTTACACTCTCTTCCCTTCACAAGTCAGGCCAGTGGAAAAGATGAA 1598 Query 1577 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1599 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1658 Query 1637 TCTCCTCTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGTTATGCATGGATCATTGCA 1696 |||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 1659 TCTCCTTTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGGTATTCATGGATCGTTGCA 1718 Query 1697 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACCTGGGATCTGTTGCTTCCA 1756 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1719 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACTTGGGATCTCTTGCTTCCA 1778 Query 1757 ATTCATGTTGGTACAGATAAGACAGTATCTTCAAGTGAAATAGAGAAAAAAGAGCAAGAT 1816 |||||||| |||| ||||||||||| |||||||| | ||||||||||||||||||||| Sbjct 1779 ATTCATGTCAGTACGGATAAGACAGTGTCTTCAAGCGCAATAGAGAAAAAAGAGCAAGAG 1838 Query 1817 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCTCCCCAT 1876 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1839 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCGCCCCAC 1898 Query 1877 GCTTTACCTACCCAGCGTTCAACTCCAGCCAATTCTGTAGAAGGCCGATCAATTCTGCTT 1936 |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1899 GCTTTACCTAACCAGCGTTCAACTCCAGCCAATTCCGTAGAAGGCAGATCAATTCTGCTT 1958 Query 1937 GACTATGTCAAGCTTTTCCATGAAAACTACATCGAATATGCCCACAAGGTCTACTTTGAG 1996 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1959 GACTATGTCAAACTTTTCCATGAAAACTACATCGAATATGCACACAAGGTCCACTTTGAG 2018 Query 1997 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2019 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2078 Query 2057 GAGGCAAATGAGAAAATATCAAAAGTTGACAAGAACCAATCTTTTCTGGAGAAAAGGATT 2116 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 2079 GAGGCAAATGAGAAAATATCAAAAGTTGAGAAAAACCAATCTTTTCTGGAGAAAAGGATT 2138 Query 2117 GACAAAGCAATTCAAAGACATGATTCTCTTGAGCAACGCTTGCAACGTCTCCGTAGCTTG 2176 |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 2139 GACAAAGCAATTGAAAGACATGATTCTCTTGAACAATGCTTGCAACGTCTCCGTAGCTTG 2198 Query 2177 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAGTCGGAGCTCGAT 2236 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2199 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAATCGGAGCTCGAT 2258 Query 2237 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATTGAAACACTGAGAGCAAGA 2296 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2259 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATCGAAACACTGAGAGCAAGA 2318 Query 2297 GTGAAAAAGTCAGCTCAAAAATCTCCCAAGGGCACAGTCGTCGCAGCTACTCAGAAAAAG 2356 ||||| |||||| |||||||||||| |||||||||||| |||||||||| |||||||||| Sbjct 2319 GTGAAGAAGTCAACTCAAAAATCTCACAAGGGCACAGTAGTCGCAGCTAGTCAGAAAAAG 2378 Query 2357 CAATATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2416 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2379 CAGTATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2438 Query 2417 GCCAAACTATCCCTGATGAACAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2476 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2439 GCCAAACTATCCCTGATGAATAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2498 Query 2477 CTGAAGTCGCAAGAAAGCAGTTTCATGTAGTCACTG--TATCACTGGGACGCAATTATCA 2534 ||||| ||||||||||||||||||||||||||||| | | || |||||||| |||||| Sbjct 2499 CTGAAATCGCAAGAAAGCAGTTTCATGTAGTCACTCACTGTAACAGGGACGCAGTTATCA 2558 Query 2535 TTTCCTGGACTGACTAGAGGTTCTGTTCAAATTTGAATATA-GTTGCTACACTAAATTTT 2593 |||||| ||||||||| | | ||||||||||||||||||| || ||| ||| ||||||| Sbjct 2559 TTTCCTTGACTGACTAAA--TCCTGTTCAAATTTGAATATATGT-GCTGCACCAAATTTT 2615 Query 2594 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAA-TCAAGCTACGGTATTACTTTAATTTGT 2652 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 2616 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAAATCAAACTACGGTATTACTTTAATTTGT 2675 Query 2653 CTCTGTAAATTGTCATTTTCTGC 2675 |||| |||| |||||||||||| Sbjct 2676 CTCTACAAATGGTCATTTTCTGC 2698 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 132842065064 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5