BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487368
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05680.1 | Symbols: MOS7 | nuclear pore complex protein-rela... 4139 0.0
> AT5G05680.1 | Symbols: MOS7 | nuclear pore complex protein-related
| chr5:1698270-1702645 FORWARD LENGTH=2698
Length=2698
Score = 4139 bits (2241), Expect = 0.0
Identities = 2526/2663 (95%), Gaps = 22/2663 (1%)
Strand=Plus/Plus
Query 22 TCTGCATCGCCGGCCGACGAACACAGATACACTTGAGTGAAAGAGAGAAAGTATGAGAA- 80
|||||||| || |||||||| ||||||||||| |||| || ||||||||||| ||
Sbjct 49 TCTGCATCTCCTTCCGACGAAAACAGATACACTCGAGT----GA-AGAAAGTATGA-AAT 102
Query 81 TTAACTTCCAGGAGCCAGAGGATACGCCAGATTCACGGCGGTCCCCGACGCCTAAAGAGC 140
||||||| | ||| |||||||| | ||||||||||| || || |||||||| |||||||
Sbjct 103 TTAACTTTAACGAGACAGAGGATGCACCAGATTCACGACGATCTCCGACGCCCAAAGAGC 162
Query 141 CGGTTCGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CGGTTAGGTGGGTTCCTCTCCAGAGCCACCCGGTTTTCGCTTCTCTTCCTTCCTCCCAAG 222
Query 201 ATGAACCCACCCCGTCGCAGCGGTTTCCGAGGAATTTCATGGCTTGGGACGGAGACTCGC 260
|||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 223 ATGAACCCGCCGTGTCGCAGCTGTTTCCGAGAAATTTCATGGCTTGGGACGGAGACTCGC 282
Query 261 GAC-TATACTACTGGGATTCTAGACGATATCTTCTACATCGATTATCTCTGCGCTTGGGT 319
| | |||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 283 G-CGTATACTACTGGGATTCGAGACGATATCTCCTTCACCGATTATCTCTGCGCTTGGGT 341
Query 320 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GAACCTGAACCATCCTCCGTCCTCGCCGCAGTCCCGTCCAAGGTGATGCAACCAGACCTT 401
Query 380 CAGATGACAATTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 439
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CAGGTGACATTTTCTGTTAGCAAAATCTCCATCAATAAGTCTGGATCAGCTGTACTTCTT 461
Query 440 GCCGGCTCAGATGGAATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGGTAGAAGAT 499
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 462 GCCGGCTCAGATGGGATATGTGTGATGTACCTATTTGGACGTGCTTCTGTGATAGAAGAC 521
Query 500 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTGGTGACAGTGCC 559
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 522 AATGTCATTTGCAGGGTAGTTTCTATTGGTTCAGAAATCTATACTAGTAGTGACAGTGCC 581
Query 560 ATAAACTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 619
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATAACCTTGCTACAAGCATCGTGGCACCCTGATAGTGACACCCATTTGGGAATTCTATCC 641
Query 620 TCAGATGCAGTTTTCAGGCTTTTCGATTTATCTTAC-GATGCTGAGCTACCAGAGCAAGA 678
|| |||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||
Sbjct 642 TCGGATGCAGTTTTCAGGCTTTTCGATTTGTCTT-CAGATACTGAGCTACCAGAGCAAGA 700
Query 679 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 ATATTATCTGCAGCCCGGTGAGCCAGGAAGATCTAGAACAGCTTCATCAATTTATCCTGC 760
Query 739 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTTTATTATTCAC 798
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 761 TGATTTCAGTTTTGGAGGAGATCATCTGTGGGATAGATTTACTGTCTTTATATTATTCAC 820
Query 799 TGATGGTTCAATTTATATCCTGTGCCCAGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 858
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 821 TGATGGTTCAATTTATATCTTATGCCCCGTTGTGCCATTTGGAAGTGTTTACAAATGGGA 880
Query 859 ATC-GATAATGGAGATTTACCACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCGA 917
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 881 ATCCG-TAATGGAGATTTACAACGATGCTAATATGTATGGGGTTAAGTCATCCAATTCG- 938
Query 918 TT-GCAGTGAGCAACTCCAGTCTGGCAATTGAATGGTTGGAAGCTACATTTCCAGATTTG 976
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 939 TTAGCAGTTAGCAACTCCAGTCTGGCTATTGAATGGTTGGAAGCTACATTTCCAGATTTG 998
Query 977 ACTGAACAAGGAACCAGAGGTGAAAATATATTGGTCGTGAAAGCTCATCCTTATGCTTTG 1036
||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 999 ACTGAGCAAGGAACTAGAGGTGAAAATATATTGGTGGTGAAAGCTCAGCCTTATGCTTTG 1058
Query 1037 CTTGACGCATCATTAGCTTTACAGGGCCCTTTATATAAAGCATCTAATGGTGACGGAGAT 1096
|||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1059 CTTGACGCATCACTGGCTTTACAGGGCCCTTTATATAAAGCATCTAGTGGCGACGGAGAT 1118
Query 1097 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGGCGGGCAGTGAGTCTATTATATAAT 1156
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1119 GAAGATTTCGCTGTTCGGGAGGCAGAATGTAAAGGCCGGGCAGTGAGTCTATTATATAAT 1178
Query 1157 CTTGTCAGCAAAGATTCGATCCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1216
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CTTGTTAGCAAAGATTCGATTCTGGTAACTGCCTGGAGTGCTGGACAATTACAGGTTGAT 1238
Query 1217 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 GCCCTGGTTGATGAAATCCAGCCTGTTTGGATATCTGGTAACTCATCTCGTCTTCGCATG 1298
Query 1277 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAGGTGAGCTT 1336
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1299 AACTCCCACAACAAAATACAAGGAGTTGCAATGATTTGTGAGTCAAACATAAGTGAGCTT 1358
Query 1337 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCGCCGCCA 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1359 CCAGTTGCAACTTCAAACCTGCCGCTCGATCACACTGTTTGGTTAGGGCATCCACCACCA 1418
Query 1397 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTTCCCACACGGCGTGAAGGTGGCTCTCTT 1456
|||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 1419 CTGTTAAGACTTGCAATGGTTGATTTGGCTCTCCCCAAAATGCGTGAAGGTGGCTCTCTT 1478
Query 1457 GTTACCTTGTTTGCTGATTCTCTTTTGCCAGAACGAATATACTCCCTCCACGACGGTGGC 1516
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1479 GTTACCTTGTTTGCTGACTCCCTTTTGCCAGAACGAATATACTCCCTTCACGACGGTGGC 1538
Query 1517 ATTGATTCAACAGTCTTACACTCTCTTCCCTTTACAAGTCAGGCCACTGGAAAAGATGAA 1576
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1539 ATTGATTCAACAGTCTTACACTCTCTTCCCTTCACAAGTCAGGCCAGTGGAAAAGATGAA 1598
Query 1577 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GCTCTCAAAACGCCATCTGTTCACACTGTCCTAAGTACATGCCAAGAAGAATCCGCTGTA 1658
Query 1637 TCTCCTCTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGTTATGCATGGATCATTGCA 1696
|||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 1659 TCTCCTTTGTTGGGTTTTGTGCCTCTGTCGGATTCGTTTGGGTATTCATGGATCGTTGCA 1718
Query 1697 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACCTGGGATCTGTTGCTTCCA 1756
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1719 GTCTTATCCTCAGGAGAATGCATTGTGGCAGAGATGAAAACTTGGGATCTCTTGCTTCCA 1778
Query 1757 ATTCATGTTGGTACAGATAAGACAGTATCTTCAAGTGAAATAGAGAAAAAAGAGCAAGAT 1816
|||||||| |||| ||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1779 ATTCATGTCAGTACGGATAAGACAGTGTCTTCAAGCGCAATAGAGAAAAAAGAGCAAGAG 1838
Query 1817 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCTCCCCAT 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1839 AACTCGTGCATCATAAGCAAGGAGCTCCTTGCAGGTCCCAAAATTAGAATTGCGCCCCAC 1898
Query 1877 GCTTTACCTACCCAGCGTTCAACTCCAGCCAATTCTGTAGAAGGCCGATCAATTCTGCTT 1936
|||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1899 GCTTTACCTAACCAGCGTTCAACTCCAGCCAATTCCGTAGAAGGCAGATCAATTCTGCTT 1958
Query 1937 GACTATGTCAAGCTTTTCCATGAAAACTACATCGAATATGCCCACAAGGTCTACTTTGAG 1996
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1959 GACTATGTCAAACTTTTCCATGAAAACTACATCGAATATGCACACAAGGTCCACTTTGAG 2018
Query 1997 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 CTGCAGCATCATGCTCCTAACCTGAAGAGAATAATCGATGACCAACACCAGCGGCTTGCT 2078
Query 2057 GAGGCAAATGAGAAAATATCAAAAGTTGACAAGAACCAATCTTTTCTGGAGAAAAGGATT 2116
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2079 GAGGCAAATGAGAAAATATCAAAAGTTGAGAAAAACCAATCTTTTCTGGAGAAAAGGATT 2138
Query 2117 GACAAAGCAATTCAAAGACATGATTCTCTTGAGCAACGCTTGCAACGTCTCCGTAGCTTG 2176
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2139 GACAAAGCAATTGAAAGACATGATTCTCTTGAACAATGCTTGCAACGTCTCCGTAGCTTG 2198
Query 2177 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAGTCGGAGCTCGAT 2236
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2199 CCTGGTACACACAAGAAACCTCTGACGAGAGCAGAACTGGATTTTAAATCGGAGCTCGAT 2258
Query 2237 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATTGAAACACTGAGAGCAAGA 2296
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2259 CAATATGCGGGAGTTGAGGTGGATGCGCTTCAATCATCCATCGAAACACTGAGAGCAAGA 2318
Query 2297 GTGAAAAAGTCAGCTCAAAAATCTCCCAAGGGCACAGTCGTCGCAGCTACTCAGAAAAAG 2356
||||| |||||| |||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 2319 GTGAAGAAGTCAACTCAAAAATCTCACAAGGGCACAGTAGTCGCAGCTAGTCAGAAAAAG 2378
Query 2357 CAATATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 CAGTATTCAAAGAAAAACTTAATTCAAGATACACAAATGTCACAGCTTCAGTCCACACTC 2438
Query 2417 GCCAAACTATCCCTGATGAACAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2439 GCCAAACTATCCCTGATGAATAGCGATAACTCCAAGAAAGTCAAGATCGTGGAATCTGCG 2498
Query 2477 CTGAAGTCGCAAGAAAGCAGTTTCATGTAGTCACTG--TATCACTGGGACGCAATTATCA 2534
||||| ||||||||||||||||||||||||||||| | | || |||||||| ||||||
Sbjct 2499 CTGAAATCGCAAGAAAGCAGTTTCATGTAGTCACTCACTGTAACAGGGACGCAGTTATCA 2558
Query 2535 TTTCCTGGACTGACTAGAGGTTCTGTTCAAATTTGAATATA-GTTGCTACACTAAATTTT 2593
|||||| ||||||||| | | ||||||||||||||||||| || ||| ||| |||||||
Sbjct 2559 TTTCCTTGACTGACTAAA--TCCTGTTCAAATTTGAATATATGT-GCTGCACCAAATTTT 2615
Query 2594 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAA-TCAAGCTACGGTATTACTTTAATTTGT 2652
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2616 CTAACTCTCTCCTTGTAAGTTTTGTCTGTTAAATCAAACTACGGTATTACTTTAATTTGT 2675
Query 2653 CTCTGTAAATTGTCATTTTCTGC 2675
|||| |||| ||||||||||||
Sbjct 2676 CTCTACAAATGGTCATTTTCTGC 2698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132842065064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5