BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487373

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05710.1 | Symbols:  | Pleckstrin homology (PH) domain super...   797    0.0  


> AT5G05710.1 | Symbols:  | Pleckstrin homology (PH) domain superfamily 
protein | chr5:1715875-1716499 FORWARD LENGTH=625
Length=625

 Score =  797 bits (431),  Expect = 0.0
 Identities = 497/528 (94%), Gaps = 7/528 (1%)
 Strand=Plus/Plus

Query  2    TTTCGATAGCATCCGCAGATTTGGATCAAAACCCTAATTCTCCAGTTCAATCGTCGGAA-  60
            ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  9    TTTCGATAGCATCGGCAGATTTGGATCAAAACCCTAATTCTCCAGTTCAATCTTCGGAAG  68

Query  61   ATGGCAAGCCTGTGGCGAGCTGTACTCGGCGGTCAGAGCAACAATTCCGACGACTACGGA  120
            |||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||||||
Sbjct  69   ATGGCAAGCCTGTGGCGAGCAGTAATCGGCGGTCAGAACAACAATTCCGAAGACTACGGA  128

Query  121  GGCGTAGAGTTCTGGTCCAACCCTGAACGAACCGGCTGGCTCACGAAACAGGGAGAGTAC  180
            ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct  129  GGCGTAGAGTTCTGGTCAAACCCAGAACGAACCGGCTGGCTCACGAAACAAGGAGAGTAC  188

Query  181  ATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  189  ATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAA  248

Query  241  GACTCCGACGTCACGCGCGTCTCACGCCCTCGCGGTGTCGTCCCCGTCGCGTCGTGCTTA  300
            ||||||||||||||||| || |||||||||||||||||||||||||| |  |||||||||
Sbjct  249  GACTCCGACGTCACGCGTGTGTCACGCCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTA  308

Query  301  ACCGCCAAAGGAGCAGAGGATGTCCTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGA  360
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  309  ACCGCTAAAGGAGCAGAGGATGTACTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGA  368

Query  361  GATGAGACTATGTACTTCATCGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCC  420
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  369  AATGAGACTATGTACTTCATTGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCC  428

Query  421  ATTGGACGGTCCATCGTGCAGAACTCCAGATCTGTTACCGATTCTGAGATCGTCGATTAC  480
            |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct  429  ATTGGACGTTCCATCGTGCAAAACTCCAGATCCGTTACCGATTCTGAGATCGTTGATTAC  488

Query  481  GATAACAAACACTAGTTCTTGATTTCTCTGTTTTTGTCTTTTGT-AAA  527
            ||||||||||||||      | |||||||||||||||||||||| |||
Sbjct  489  GATAACAAACACTAAA----G-TTTCTCTGTTTTTGTCTTTTGTCAAA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25971053999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5