BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487374
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05730.2 | Symbols: ASA1 | anthranilate synthase alpha subun... 1927 0.0
> AT5G05730.2 | Symbols: ASA1 | anthranilate synthase alpha subunit
1 | chr5:1719575-1722910 REVERSE LENGTH=2139
Length=2139
Score = 1927 bits (1043), Expect = 0.0
Identities = 1128/1168 (97%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 1 TTTAGCCGTCACCTCTGAATCTTCTTCTCCGATATTTTTC-AACATTCCGGCCGCCACCG 59
||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct 26 TTTAGCCGTCACCTCTGAATCTTCTTCTCCG--A-TCTTCAAACATTCCGGCCGCCACCG 82
Query 60 AGTTCGTAGCCGTTACAATGTCTTCCTCTATGAATGTAGCGACGATGCAACctctgactt 119
||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 83 AGTTCTTAGCCGTTACAATGTCTTCCTCTATGAACGTAGCGACGATGCAAGCACTGACTT 142
Query 120 tctctcgccggcttgtcccttctgtggcttctcgctatctctcttcttcttcttctGTGA 179
|||||||||||||| |||||||||| |||||||| | | |||| ||||||||||||||||
Sbjct 143 TCTCTCGCCGGCTTCTCCCTTCTGTTGCTTCTCG-T-TATCTC-TCTTCTTCTTCTGTGA 199
Query 180 CCGTTACTGGATATTCCGGTAGAAGCTCGGCTTACGCGCCTTCTTTCCCTTCGATTAAAT 239
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 200 CCGTTACTGGATACTCCGGTAGAAGCTCGGCTTACGCGCCTTCTTTCCGTTCGATTAAAT 259
Query 240 GCGTCTCTGTTTCTCCGGAAGCTTCAATAGTAAGTGACACAAAGAAGTTGGCAGATGCTT 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 260 GCGTCTCTGTTTCTCCGGAAGCTTCAATAGTAAGTGATACAAAGAAGTTGGCAGATGCTT 319
Query 300 CTAAGAGCACAAACCTTATACCAATTTACCGCTGTATATTCTCTGATCAGCTTACTCCGG 359
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 320 CTAAGAGTACAAACCTTATACCAATTTACCGCTGTATATTCTCTGATCAGCTTACTCCTG 379
Query 360 TTCTTGCTTACCGTTGTTTGGTTAAAGAAGATGACCGTGAAGCTCCTAGCTTTCTTTTCG 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 380 TTCTTGCTTACCGTTGTTTGGTCAAAGAAGATGACCGTGAAGCTCCTAGCTTTCTTTTCG 439
Query 420 AGTCCGTTGAGCCAGGTTCTCAGATGTCAAGCGTTGGTCGTTATAGCGTTGTTGGGGCTC 479
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 440 AGTCCGTTGAGCCTGGTTCTCAGATGTCTAGCGTTGGTCGTTATAGCGTTGTTGGGGCTC 499
Query 480 AACCTGCCATGGAGATCGTGGCAAAGGAGAATAAAGTTATTGTAATGGATCACTGTAATG 539
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 500 AGCCTGCGATGGAGATCGTGGCAAAGGAGAATAAAGTTATTGTAATGGATCACAACAATG 559
Query 540 AAACCATGACTGAGGAATAT-GTCGAAGATCCAATGGAGATCCCAAGAAAAATCTCCGAG 598
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 560 AAACCATGACTGAGGAAT-TCGTCGAAGATCCAATGGAGATCCCAAGAAAAATCTCTGAG 618
Query 599 AAATGGAACCCTGATCCTCAACTAGTTCAGGACCTTCCAGATGCCTTTTGTGGTGGGTGG 658
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 619 AAATGGAACCCTGATCCTCAACTAGTTCAGGACCTTCCAGATGCGTTTTGTGGTGGGTGG 678
Query 659 GTTGGTTTTTTCTCGTACGACACGGTTCGTTACGTTGAGAAGAGGAAATTGCCATTTTCA 718
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 679 GTTGGTTTTTTCTCGTACGACACTGTTCGTTATGTTGAGAAGAGGAAATTGCCATTTTCA 738
Query 719 AAGGCCCCTGAGGATGATAGGAACTTGCCAGACATGCATCTTGGTCTGTACGACGATGTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AAGGCCCCTGAGGATGATAGGAACTTGCCAGACATGCATCTTGGTCTGTACGACGATGTA 798
Query 779 GTTGTATTTGATCACGTGGAAAAGAAAGCATATGTCATTCACTGGATTAGACTAGATGGT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GTTGTATTTGATCACGTGGAAAAGAAAGCATATGTCATTCACTGGATTAGACTAGATGGG 858
Query 839 AGCCTTCCTTACGAAAAGGCATACAGTAATGGAATGCAACATTTGGAGAACTTGGTGGCC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGCCTTCCTTACGAAAAGGCATACAGTAATGGAATGCAACATTTGGAGAACTTGGTGGCC 918
Query 899 AAGTTACATGATATTGAGCCGCCAAAACTGTCTGCAGGTAACGTGAATCTTCAGACACGA 958
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 919 AAGTTACATGATATTGAGCCGCCAAAACTGGCTGCAGGTAACGTGAATCTTCAGACACGA 978
Query 959 CAATTTGGGCCGTCTTTGGATAATTCAAATGTGACATGCGAAGAGTACAAGGAGGCTGTG 1018
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 979 CAATTTGGGCCATCTTTGGATAATTCAAACGTGACATGCGAAGAGTACAAGGAGGCTGTG 1038
Query 1019 GTCAAGGCCAAAGAACATATACTTGCAGGAGACATATTCCAGATCGTGCTGAGCCAACGT 1078
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1039 GTCAAGGCCAAAGAACATATACTTGCAGGAGACATATTTCAGATCGTGCTGAGTCAACGT 1098
Query 1079 TTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAAT 1158
Query 1139 CCAAGTCCGTATATGGGTTATTTGCAGG 1166
||||||||||||||||||||||||||||
Sbjct 1159 CCAAGTCCGTATATGGGTTATTTGCAGG 1186
Score = 1413 bits (765), Expect = 0.0
Identities = 842/879 (96%), Gaps = 6/879 (1%)
Strand=Plus/Plus
Query 1155 GTTATTTGCAGGCTAGAGGATGTATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAG 1214
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1264 GTTA-TT-CAGGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAG 1321
Query 1215 TAAAGCAGAATAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATG 1274
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TAAAGCAGAACAAGATAGTGAATCGGCCATTGGCAGGAACCAGCAAGAGAGGGAAGAATG 1381
Query 1275 AAGTTGAGGATAAGAGATTAGAGAAGGAGCTGCTGGAGAATGAAAAGCAATGTGCTGAGC 1334
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1382 AAGTTGAGGATAAGAGATTAGAAAAGGAACTGCTAGAGAATGAAAAGCAATGTGCTGAGC 1441
Query 1335 ACATCATGTTGGTTGATCTCGGTCGTAACGATGTTGGAAAGGTTGCGAAATACGGTTCAG 1394
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 1442 ACATCATGTTGGTTGATCTCGGTCGCAACGATGTTGGAAAGGTTACGAAATACGGATCAG 1501
Query 1395 TGAAAGTAGAGAAGCTTATGAACATCGAACGTTATTCCCATGTTATGCATATAAGTTCAA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1502 TGAAAGTAGAGAAGCTTATGAACATCGAACGTTATTCCCATGTTATGCATATAAGCTCCA 1561
Query 1455 CGGTGACAGGAGAGTTACAAGATGATTTGACTTGCTGGGACACACTACGTGCGGCTTTAC 1514
||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1562 CGGTGACAGGAGAATTACAAGATGGTTTGACTTGCTGGGACGTACTACGTGCGGCTTTAC 1621
Query 1515 CAGTGGGAACAGTTAGTGGTGCACCAAAGGTCAAAGCCATGGAACTAATCGATGAGCTAG 1574
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1622 CAGTGGGAACAGTTAGTGGTGCACCAAAGGTCAAAGCTATGGAACTAATCGATGAGCTAG 1681
Query 1575 AGCCAACAAGACGTGGACCATACAGTGGTGGTTTTGGTGGAGTCTCCTTCACTGGTGACA 1634
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1682 AGCCAACGAGGCGTGGACCATACAGTGGCGGTTTTGGTGGAGTCTCCTTCACTGGTGACA 1741
Query 1635 TGGACATTGCCTTATCCCTTAGGACAATCGTTTTCCCGACAGCATGTCAATACAATACAA 1694
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1742 TGGACATTGCTTTATCCCTTAGGACAATCGTTTTTCCGACAGCATGTCAATACAATACAA 1801
Query 1695 TGTATTCTTACAAGGATGCTAACAAACGGCGTGAGTGGGTGGCTTATCTTCAAGCTGGAG 1754
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 TGTACTCTTACAAGGATGCTAACAAACGGCGTGAGTGGGTGGCTTATCTTCAAGCTGGAG 1861
Query 1755 CTGGTGTAGTAGCTGATAGTGACCCGCAAGATGAACACTGTGAGTGCCAGAACAAAGCCG 1814
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1862 CTGGTGTAGTAGCTGATAGTGACCCGCAAGACGAACACTGTGAGTGCCAGAACAAAGCCG 1921
Query 1815 CTGGTCTTGCTCGAGCCATCGACTTGGCTGAATCTGCATTTGTTAAAAAATGAATGTGCC 1874
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1922 CTGGTCTTGCTCGAGCCATCGACTTGGCTGAATCTGCATTTGTGAAAAAATGATTGTGCC 1981
Query 1875 CAAGAACAGAGA--GGCTTTCTTTGTAACTCCGAGTTCATGTGTATAAAACAGTTGCTAG 1932
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 1982 CAAGAACAGAGGCTGGCTTTCTTTG-AACTCCGAGTTCATGTGTATAAAACAGTTACAAG 2040
Query 1933 CAGAACAAAGGATTCTCTTTTTCTTGATATTGTGAGAATTGCAATTAGACTCCATTAATG 1992
|||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2041 CAGAACAAAGTTTTTTCTTTTTCTTGATTTTGTGAGAATTGCAATTAGACTCCATTAATG 2100
Query 1993 AAGCTCTGAAAA-TGTTACAATAGAAACCATGGTCAATA 2030
|||||||||||| ||||||||||||||||||||||||||
Sbjct 2101 AAGCTCTGAAAAATGTTACAATAGAAACCATGGTCAATA 2139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100802694360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5