BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487375
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05740.1 | Symbols: ATEGY2, EGY2 | ethylene-dependent gravit... 2837 0.0
> AT5G05740.1 | Symbols: ATEGY2, EGY2 | ethylene-dependent gravitropism-deficient
and yellow-green-like 2 | chr5:1723836-1726859
REVERSE LENGTH=1858
Length=1858
Score = 2837 bits (1536), Expect = 0.0
Identities = 1714/1799 (95%), Gaps = 15/1799 (1%)
Strand=Plus/Plus
Query 1 ATGAATCTCGCGGTGGCTAGTTTTCGCGGCAATTTCGGAGTCTTGTCGCAATGCAGCTCA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAATCTCGCGGTGGCTAGTTTTCGCGGCAATTTCGGCGTCTTGTCGCAATGCAGCTCA 60
Query 61 TGTTGTAGTCTTCAGTTTCAGCCTTTTGTAGCTGCTACTTCGAGTCTCAGTTTTGGGCAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 61 TGTTGTAGTCTTCAGTTTCAGCCTTTTGTAGCTGCTACTTCCAGTCTCAATTTTGGGCAA 120
Query 121 ACAGGAACATCTCGAAGGAAGAAGGATCTGAAGATTGAAAGAGTTTTCAGAAAGAGAGAG 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ACAGGAACATCTCGAAGGAAGAAGGATCTGAAGCTTGAAAGAGTTTTCAGAAAGAGAGAG 180
Query 181 ACTTTGGTTAGAGTGACGGAGACGCAAACAGAACCAGAAGGCAATAACGACGAGGATAAT 240
||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||
Sbjct 181 ACTTTGGTTAGAGTGACGGAGACGCAAACGGAACCAGAAGGCAATGATGATGAGGATAAT 240
Query 241 AATGGTGAAGAAGGCAAAGAGA-CTTCAGCAGATGATCCACCTACACAAATTCCTACTGA 299
| ||||||||||||||| | || ||||||||||| |||||| |||||||||||||
Sbjct 241 -A-----AAGAAGGCAAAGAGAGC-TCTGCAGATGATCCTCCTACAAAAATTCCTACTGA 293
Query 300 GTTGAATTCACAGTCAACAGTTGTGAATGAAGCGCCGGGCAATGAGGAGGAAAACAAAGC 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GTTGAATTCACAGTCAACGGTTGTGAATGAAGCGCCGGGCAATGAGGAGGAAAACAAAGC 353
Query 360 TCAGTTCAATTCTCAGGACGGTGATAAATTAGAAATTAGCAGCGGTTCTCCTCTTCCTGG 419
|||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 354 TCAGTTCAGTTCTCAGGACGGTGATAAATTAGAAGTTAGCAGTGGTTCTCCTCTTCCTGG 413
Query 420 TGTGAATGTAAGTATTATCAACAATGTTAAATACAAAGGCGACAGCTTAATGCTTTCTGT 479
|||||||||||||||||||| | |||||| ||||||| ||||||| ||||| ||||||
Sbjct 414 TGTGAATGTAAGTATTATCATCCATGTTATTTACAAAGACGACAGCATAATGTTTTCTGG 473
Query 480 TTGTTTATCTTTCATAAAAAGTTGTTGTGAACAGCCATTACAATTTGATGATTCTATGAG 539
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 474 TTGTTTATCTTTCATAAAAAGTTGTTGTGAACAGCCATTACAATTGGACGATTCCATGAG 533
Query 540 ACTCCCCAAGGAAACCATTGATATTCTCAGGGGCCAAGTATTCGGGTTTGACACCTTCTT 599
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 534 ACTCCCCAAGGAAACCATTGATATTCTCAGGGGCCAAGTATTTGGATTTGACACCTTCTT 593
Query 600 CGTAACAAGTCAAGAACCATACGAGGGTGGGGTATTGTTCAAAGGAAACCTAAGGGGCGA 659
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||| |
Sbjct 594 CGTAACAAGCCAAGAACCATATGAGGGTGGGGTATTGTTCAAAGGAAATCTAAGAGGCAA 653
Query 660 GCCTGCTAAAAGTTACGAAAAGATAAAGACGAGGATGGAGAATAATTTTGGTGACCAGTA 719
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCCTGCTACAAGTTACGAGAAGATAAAGACGAGGATGGAGAATAATTTTGGTGACCAGTA 713
Query 720 CAAGCTTTTCCTCCTCTCCAATCCTGAGGATGATAAACCTGTGGCCGTTGTTGTTCCAAG 779
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CAAGCTTTTCCTTCTCACGAATCCTGAGGATGATAAACCTGTGGCCGTTGTTGTTCCAAG 773
Query 780 AAGGTCCTTAGAACCCGAAACAACAGCTGTTCCTGAATGGTTTGCTGCTGGTTCTTTTGG 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAGGTCCTTAGAACCCGAGACAACAGCTGTTCCTGAATGGTTTGCTGCTGGTTCTTTTGG 833
Query 840 ATTGGTGGCATTGTTTACATTGTTTCTCCGTAATGTGCCCGCCTTGCAATCCGACTTACT 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 834 ATTGGTGGCATTGTTTACATTGTTTCTCCGTAATGTGCCTGCCTTGCAATCCGACTTACT 893
Query 900 ATCGGCATTTGACAACCTTGAACTGTTGAAAGATGGCTTACCGGGAGCTCTTGTCACCGC 959
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 894 ATCGGCCTTTGACAACCTTGAACTGTTAAAAGATGGCTTACCAGGAGCTCTTGTCACCGC 953
Query 960 TCTTGTCCTTGGAGTACATGAACTGGGACACATTTTAGTTGCAAATAGCTTAGGGATAAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 954 TCTTGTCCTTGGAGTACATGAACTGGGACACATTTTAGTTGCAAATAGCTTAGGAATAAA 1013
Query 1020 GCTTGGTGTTCCATTCTTTGTTCCAAGTTGGCAGATAGGCTCTTTCGGTGCTATAACGAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCTTGGTGTTCCATTCTTTGTTCCAAGTTGGCAGATAGGCTCTTTCGGTGCTATAACGAG 1073
Query 1080 AATCAAAAATATCGTAGCCAAGCGAGAAGATCTTTTGAAGGTCGCAGCTGCAGGACCTTT 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1074 AATCAAAAATATCGTAGCCAAGCGAGAAGATCTTTTGAAGGTTGCAGCTGCAGGACCTTT 1133
Query 1140 GGCTGGCTTTTCTCTAGGCTTGATTCTGTTTCTTCTAGGGTTGTTCGTGCCTCCTAGTGA 1199
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 1134 GGCTGGCTTTTCTCTAGGCTTGATTCTGTTTCTTATAGGGTTATTCGTGCCTCCCAGTGA 1193
Query 1200 CGGCATTGGCGTTGTAGTTGACGCATCAGTGTTTCACGAATCCTTCCTTGCTGGTGGTAT 1259
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 CGGCATTGGCGTTGTAGTTGATGCATCAGTGTTTCACGAGTCCTTCCTTGCTGGTGGTAT 1253
Query 1260 TGCAAAGCTCTTACTAGGTGATGCACTCAAAGAAGGAACTTCATTATCTCTTAACCCACT 1319
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1254 TGCAAAGCTCCTACTAGGTGATGCACTCAAAGAAGGAACTTCAATATCTCTTAACCCACT 1313
Query 1320 TGTGATCTGGGCATGGGCTGGACTTCTCATCAATGGCATTAACAGCATCCCTGCAGGGGA 1379
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1314 TGTGATCTGGGCATGGGCTGGACTTCTCATCAATGGCATTAACAGTATCCCTGCGGGGGA 1373
Query 1380 GCTCGATGGGGGCAAAATAGCTTTCTCCATTTGGGGTAGAAAGACCGCAACACGGCTCAC 1439
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1374 GCTCGATGGGGGCAAAATAGCTTTCTCCATTTGGGGAAGAAAGACCGCAACACGGCTCAC 1433
Query 1440 GGGTGCATCCATAGCGCTTTTGGGCTTATCGGCGTTGTTCAGTGACGTGGCATTCTACTG 1499
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1434 GGGTGCATCCATAGCGCTTTTGGGCTTATCGGCGTTGTTCAGCGACGTGGCATTCTACTG 1493
Query 1500 GGTGGTTCTGATATTCTTCCTGCAGCGTGGACCGATTGCACCGCTGGCTGAAGAAATCAC 1559
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1494 GGTGGTTCTGATATTCTTCCTGCAGCGTGGACCGATTGCGCCGCTGGCTGAAGAAATCAC 1553
Query 1560 GGCACCTGATGATAAGTATGTGTCTCTAGGAATCCTGGTTCTGTTCCTCTCCTTGCTTGT 1619
|| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1554 GGTGCCTGATGATAAGTATGTGTCTCTTGGAATCCTGGTTTTGTTTCTCTCCTTGCTTGT 1613
Query 1620 GTGTTTGCCTTACCCATTTGCTTTCACCGGCAATGAAGCCATGATGATTGGCTTGTGAAG 1679
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1614 GTGTTTGCCTTACCCATTTGCTTTCACGGGCAATGAAGCCATGATGATTGGCTTGTGAAG 1673
Query 1680 TGAGTCATATCATTACACAGCTCAGTAAGAAATCAGAGATATAGTTGTAACTTTTTGTTT 1739
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1674 TGACTCATATCATTACACCGCACAATAAGAAATCAGAGATATAGTTGTAACTTTTTGTTT 1733
Query 1740 TGGTCTCTAAGTTATGTTCTACTATT-ACATCTTAAGTTATGTTTTTGTTCTTGTTCTA 1797
||||||||| | | |||||| || |||||| |||||||||||||||||||| ||||
Sbjct 1734 TGGTCTCTA--T---GCTCTACT-TTGACATCTAAAGTTATGTTTTTGTTCTTGCTCTA 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5