BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487377
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05760.1 | Symbols: SYP31, ATSED5, ATSYP31, SED5 | syntaxin ... 1712 0.0
> AT5G05760.1 | Symbols: SYP31, ATSED5, ATSYP31, SED5 | syntaxin
of plants 31 | chr5:1728893-1731021 REVERSE LENGTH=1347
Length=1347
Score = 1712 bits (927), Expect = 0.0
Identities = 1029/1079 (95%), Gaps = 4/1079 (0%)
Strand=Plus/Plus
Query 1 AATTTGCCGGTGA-TTTTGATCCAAGTCTGACCCTACGATGGGCTCGACGTTCAGGGATC 59
||||||||||||| ||| | | ||| || |||||| ||||||||||||||||||| ||||
Sbjct 82 AATTTGCCGGTGACTTTAG-TTCAATTCCGACCCTCCGATGGGCTCGACGTTCAGAGATC 140
Query 60 GGACGGTGGAGTTTCATTCATTGTCCCAAACGTTGAGGAAGATCGGAGCGATCCCGTCCG 119
||||||||||| |||||||| |||||||||| |||| ||||||||| || ||||||||||
Sbjct 141 GGACGGTGGAGCTTCATTCACTGTCCCAAACATTGAAGAAGATCGGGGCAATCCCGTCCG 200
Query 120 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 260
Query 180 ATAAGAAGGCTTCCCGGATCGGGTTAGGAATCCACGAAACGTCTCAGAAGATCGCGAGGC 239
|||||||||||||||||||||||||||| || | |||||||| ||||||||| ||||||
Sbjct 261 ATAAGAAGGCTTCCCGGATCGGGTTAGGTATTAAAGAAACGTCACAGAAGATCACGAGGC 320
Query 240 TCGCTAAATTGGCAAAACAATCGTCGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 321 TCGCTAAATTGGCAAAACAATCGACGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 380
Query 300 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 440
Query 360 CCCTTCAGAACATGGAGATTGCTGATGGGAACTATTCACAGGACAAAGTTGGTCACTACA 419
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 441 CCCTTCAGAACATGGAGCTTGCTGATGGGAACTATTCACAGGACCAAGTTGGTCATTACA 500
Query 420 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACAAAGCAACTTCAAGATG 479
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 501 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACTAAGCAGCTTCAAGATG 560
Query 480 TTCTAACTACAAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TTCTAACTACGAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 620
Query 540 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATACAAAATCTGTACCTGAGCCTCCTC 599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 621 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATGCAAAATCTGTACCTGAGCCTCCTC 680
Query 600 CTTGGTCAAGTTCATCAAATCCTTCCGAGAATTTACAACAACCACTATTGCCGCCATTAC 659
|||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||
Sbjct 681 CTTGGTCAAGTTCATCAAATCCTTTCGGGAATTTACAACAACCACTATTACCTCCATTAA 740
Query 660 ATACTGGAGCTCCTCCAGGTAGCCAGCTCAGACGCAGATCTGCGATCGAGAATGCTCCTT 719
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 741 ATACTGGAGCTCCGCCAGGTAGCCAGCTCAGACGCAGATCCGCGATCGAGAATGCTCCTT 800
Query 720 CACAGCAAATGGAGATGTCCATGTTGCAGCAAACAGTCCCAAGGCAGGAGAACTACAGCC 779
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 801 CACAGCAAATGGAGATGTCCTTGTTGCAGCAAACAGTCCCAAAGCAGGAGAACTATAGCC 860
Query 780 AAAGCCGAGCGGTTGCACTTCACAGTGTTGAATCAACAATAACAGAGCTCAGTGGAATAT 839
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 861 AAAGTCGAGCGGTTGCACTTCACAGTGTTGAATCAAGAATAACAGAGCTCAGTGGAATAT 920
Query 840 TCACGCATCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATTGATGACA 899
|| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 921 TCCCGCAGCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATCGATGACA 980
Query 900 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGCAGCGCTCTTCTGCAGCATCTCA 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 981 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGTAGCGCTCTTCTGCAGCATCTCA 1040
Query 960 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1100
Query 1020 TCATTGTCTTTC-TCTTCTTTGTGGCTTGAAACAATGCCATTTAATCTCTTGTTCCTGG 1077
| ||||| |||| ||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1101 TGATTGT-TTTCCTCTTCTTTGTGGCTTAAAACAATACCATTTTATCTCTTGTTCCTGG 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5