BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487383
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05820.1 | Symbols: | Nucleotide-sugar transporter family p... 2412 0.0
AT3G11320.1 | Symbols: | Nucleotide-sugar transporter family p... 1175 0.0
> AT5G05820.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:1751688-1754178 REVERSE LENGTH=1669
Length=1669
Score = 2412 bits (1306), Expect = 0.0
Identities = 1563/1676 (93%), Gaps = 62/1676 (4%)
Strand=Plus/Plus
Query 1 TGTTGTTGCAGCTTTAGCCCAAAGAtctctcctttctgcagag------cttcttcttct 54
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1 TGTTGTTGCAGCTTTAGCCCAAAGATCTCTCCTTTTTGCAGAGCTTCTTCTTCTTCTTCT 60
Query 55 -------t-----c--t-ttctctttcccagtttcttcgtctcCATCATTTTCGCGTGTT 99
| | | ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 61 CCAAAAATCCCAACTTTCTTCTCTTTCCCGGTTTCTTCGTCTCCAGCATTTTCGCGTGTT 120
Query 100 GTAACCTAATCC-AATCTTACCCATCGATGGAATAACATCATCAGGACGCG-CCAAATTC 157
|||||||||||| |||||||||||| |||||||||||||||||| |||||| | ||||||
Sbjct 121 GTAACCTAATCCAAATCTTACCCATTGATGGAATAACATCATCACGACGCGTCAAAATTC 180
Query 158 TGTGTCGGAGGACCGAGAGATCTCCATCTCCTGTCCAGATTCGATTCCCACCAATCCCAA 217
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTATCGGAGGACCGAGAGATCTCCATCTCCTGTCCAGATTCGATTCCCACCAATCCCAA 240
Query 218 TTTCTTGAAATTCGCTAGGGTTTTAGATTAAATCTCATCAGTCATCAGATCGAGTCGA-- 275
|||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||||
Sbjct 241 TTTCGTGAAATTCGTTAGGGTTTTAGTTTGAATCTCATC--TCATCAGATCGAGTCGACC 298
Query 276 C---A-CAGGAAGAAGAAAA-CGATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCG 330
| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAGGATTAGGAAGAAGAAAAGCGATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCG 358
Query 331 GGCTAGT-GACGTCATGGTACTCATCGAACATTGGAGTATTGTTGCTGAACAAGTACTTG 389
||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 GGCTAGTCG-CGTCTTGGTACTCATCGAACATTGGTGTATTGTTGCTGAACAAGTACTTG 417
Query 390 CTTAGCAATTACGGATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGT 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTTAGCAATTACGGATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGT 477
Query 450 TCGTTACTCAGCTACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGA 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCGTTACTCAGCTACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGA 537
Query 510 TCCCGAGTTCAGTTCTTTAAGATCTCAGCTCTAAGTCTCGTTTTTTGTGTGTCGGTGGTC 569
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 TCCAGAGTTCAGTTCTTTAAGATCGCAGCTCTAAGTCTCGTTTTTTGTGTGTCGGTGGTC 597
Query 570 TTTGGTAACATCTCTCTTCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCGACG 629
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 TTTGGTAACATCTCTCTCCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCTACG 657
Query 630 ACGCCGTTTTTCACCGCCGTGTTTGCTTACCTGATGACGCTTAAGAAAGAGGCTTGGTTG 689
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 ACGCCGTTTTTCACCGCCGTGTTTGCTTACCTGATGACGCGTAAGAAAGAGGCTTGGTTG 717
Query 690 ACTTACTTCACTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCCAGTGGGGGTGAGCCA 749
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 ACTTACTTCACTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCTAGTGGGGGTGAGCCA 777
Query 750 AGCTTTCACCTGTTTGGATTCCTTATGTGCATTGCAGCCACAGCTGCGAGAGCACTTAAA 809
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 AGCTTTCACCTGTTTGGATTCCTTATGTGCATTGCAGCAACAGCTGCGAGAGCACTTAAA 837
Query 810 TCCGTGCTTCAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTC 869
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCAGTGCTTCAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTC 897
Query 870 CTCCTTTACATGGCTCCAATAGCTGTCGTGTTCCTTCTGCCTGCTACTCTTATCATGGAG 929
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 CTCCTTTACATGGCTCCAATAGCTGTCGTGCTCCTTCTGCCTGCTACTCTTATCATGGAG 957
Query 930 AAAAATGTTGTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTAT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAAAATGTTGTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTAT 1017
Query 990 CTTCTATTCAATTCAGCGCTCGCCTATTTCGTCAACTTGACAAATTTCTTAGTCACGAAA 1049
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1018 CTTCTATTCAATTCAGCGCTCGCCTATTTAGTCAACTTGACAAATTTCTTAGTCAC-AAA 1076
Query 1050 C-ACACTAGCGCCCTGACTCTGCAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGT 1108
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCACACTAGCGCCCTGACTTTACAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGT 1136
Query 1109 GGTCTCTATTCTAATCTTCAAGAATCCGGTCTCAGTGACCGGAATGCTGGGTTACTCCCT 1168
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1137 GGTCTCTATTCTAATCTTCAAGAATCCGGTGTCAGTGACCGGAATGCTGGGTTACTCCCT 1196
Query 1169 CACCGTCTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAA--TGAGAACAC 1226
||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||
Sbjct 1197 CACCGTCTGTGGAGTTATCCTGTACAGCGAAGCCAAGAAACGAAACAAAAATTAGAACAC 1256
Query 1227 CGAACACATACCAAGCTT---CTTCTTCTTC-T--T-CCTCCCTATATATATGTTTTATA 1279
|||||| || |||||| |||||||||| | | || ||||||||||||||||||||
Sbjct 1257 TAAACACACACAAAGCTTTTACTTCTTCTTCATCATTCCCCCCTATATATATGTTTTATA 1316
Query 1280 TTTTCTCCCTTACGGATACACAGGCAAGTAGTCTCTTTTGCTGTTACCAAACTGACTCTT 1339
||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 TTTTCTCCCCTATGGATATACAGGCAAGTAGTCTCTTTTGCTGGG-CCAAACTGACTCTT 1375
Query 1340 GTCTTAATGAAAAGCTGGGCCAAAAGCATGGAATTTTTT-GGCAGAAACACGAGAAGCAA 1398
||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||
Sbjct 1376 GTCTTAATGAAAAGCTGGGCCAAAAACATCTCTTTTTTTTGGCAGAAACA-GAGAAGCAA 1434
Query 1399 AGCCACACAAAGATTGATTACCAAAGGCAAGAATTTAGAGAACTTCCTCCTATGAATAAG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AGCCACACAAAGATTGATTACCAAAGGCAAGAATTTAGAGAACTTCCTCCTATGAATAAG 1494
Query 1459 TAACCttttt-ttG---ATTTT-GTTCTTTCT-C--GGATTCTCTTGCCTTTCCTGCT-- 1508
|||||||||| || ||||| ||||||||| | ||||||||||||||||||| ||
Sbjct 1495 TAACCTTTTTGTTTTTCATTTTTGTTCTTTCTTCTCGGATTCTCTTGCCTTTCCT-CTGT 1553
Query 1509 AGGTTGTTTGTTAAAATAGCTTTTGTTTCTTCGATTCTTTACATTTTAGTTTTGTGATGT 1568
|||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1554 AGGTTGTTTGTTGAATTAGGTTT-GTTTCTTCGATTCTTTACATTTTAGTTTTGTGATGT 1612
Query 1569 CAACATTT-ACAACAACACCGATTGATTAATT-AATCGAAAGAGAGAAAGTTCCTT 1622
|||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||
Sbjct 1613 CAACATTTTACAACAACACGGATTGATTCATTTAATCGAAAGAGAGAAAGTTCCTT 1668
> AT3G11320.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr3:3546646-3548856 REVERSE LENGTH=1615
Length=1615
Score = 1175 bits (636), Expect = 0.0
Identities = 841/940 (89%), Gaps = 14/940 (1%)
Strand=Plus/Plus
Query 286 AGAA-AACGATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCGGGCTAGTGA-CGTC 343
|||| || ||||||||| ||| | ||||||||||||||||||||||| || || | ||||
Sbjct 310 AGAAGAA-GATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACTCGT-AGCGTC 367
Query 344 ATGGTACTCATCGAACATTGGAGTATTGTTGCTGAACAAGTACTTGCTT-AGCAATTACG 402
|||||| ||||||||||| ||||| || |||||||||||||||||| || ||||| || |
Sbjct 368 ATGGTATTCATCGAACATCGGAGTTTTATTGCTGAACAAGTACTTG-TTAAGCAACTATG 426
Query 403 GATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGTTCGT-TACTCAGC 461
|||||||||| |||||||| ||||||||||||||||||||||||||||| | | ||||||
Sbjct 427 GATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTC-TCTTCTCAGC 485
Query 462 TACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGATCCCGAGTTCAG 521
||||| || ||||||||| ||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 486 TACGTTGCTATTGCTTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTCGAGTTCAG 545
Query 522 -TTCTTTAAGATCTCAGC-TCTAAGTCTCGTTTTTTGTGTGTCGGTGGTCTTTGGTAACA 579
||| |||||||| | || | ||||||||||||| |||||||||||||| ||||| || |
Sbjct 546 TTTC-TTAAGATCGCTGCGT-TAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGGGAATA 603
Query 580 TCTCTCTTCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCGACGACGCCGTTTT 639
|||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||
Sbjct 604 TCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATTGGTGCTACGACGCCGTTTT 663
Query 640 TCACCGCCGTGTTTGCTTACCTGATGACGCTTAAGAAAGAGGCTTGGTTGACTTACTTCA 699
||||||||||||||||||| ||||| || |||||| ||| |||||||||||||||||||
Sbjct 664 TCACCGCCGTGTTTGCTTATCTGATTACTTTTAAGAGAGAAGCTTGGTTGACTTACTTCA 723
Query 700 CTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCCAGTGGGGGTGAGCCAAGCTTT-CAC 758
||||||||||||| || ||||| ||||| |||||||||||| |||||||||| ||| |||
Sbjct 724 CTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGAGTGAGCCAAG-TTTCCAC 782
Query 759 CTGTTTGGATTCCTTATGTGCATTGCAGCCACAGCTGCGAGAGCACTTAAATCCGTGCTT 818
|||||||||||| |||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 783 CTGTTTGGATTCATTATGTGCATTGCAGCTACAGCTGCAAGAGCACTTAAATCAGTTCTT 842
Query 819 CAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTCCTCCTTTAC 878
|||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||||
Sbjct 843 CAAGGAATTTTGCTTTCTTCAGAAGGGGAGAAGCTAAATTCCATGAACCTCCTCCTTTAC 902
Query 879 ATGGCTCCAATAGCTGTCGTGTTCCTTCTGCCTGCTACTCTTATCATGGAGAAAAATGTT 938
|||||||| |||||||| |||||||| || |||||||| ||||||||||| |||||||||
Sbjct 903 ATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACACTTATCATGGAAAAAAATGTT 962
Query 939 GTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTATCTTCTATTC 998
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 963 GTTGGCATTACAATTGCACTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCTATTC 1022
Query 999 AATTCAGCGCTCGCCTATTTCGTCAACTTGACAAATTTCTTAGTCACGAAACACACTAGC 1058
||||| ||||| || ||||| || |||||||| ||||||||||||||||||||||| |||
Sbjct 1023 AATTCGGCGCTAGCTTATTTTGTGAACTTGACCAATTTCTTAGTCACGAAACACACCAGC 1082
Query 1059 GCCCTGACTCTGCAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGTGGTCTCTATT 1118
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1083 GCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATCAATC 1142
Query 1119 CTAATCTTCAAGAATCCGGTCTCAGTGACCGGAATGCTGGGTTACTCCCTCACCGTCTGT 1178
|| || |||| |||||| ||||||||||| |||||| | |||||||| ||||| ||||||
Sbjct 1143 CTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGTCTGT 1202
Query 1179 GGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAAT 1218
||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAAT 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5