BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487384
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05840.1 | Symbols: | Protein of unknown function (DUF620) ... 2734 0.0
> AT5G05840.1 | Symbols: | Protein of unknown function (DUF620)
| chr5:1757098-1760666 REVERSE LENGTH=1698
Length=1698
Score = 2734 bits (1480), Expect = 0.0
Identities = 1625/1696 (96%), Gaps = 6/1696 (0%)
Strand=Plus/Plus
Query 1 CGTAAGCAGAGTGAGAGAGCGTGCAGACACGACAAAACAAAAGGCCTCCCCACGTTCCGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGTAAGCAGAGTGAGAGAGCGTGCAGACACGACAAAACAAAAGGCCTCCCCACGTTCCGG 60
Query 61 TCGGTTGGTGACAACGACGAATGTCTCTTTTCTAATTTCAATCTCTTTTAAGTTTTCATC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGGTTGGTGACAACGACGAATGTCTTTTTTCTAATTTCAATCTCTTTTAAGTTTTCATC 120
Query 121 AAATCCAAATTTCCCACAGATAGCCTCCCTCTCTTCACTCAGCTTAAATTTCTCCGTTC- 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAATCCAAATTTCCCACAGATAGCCTCCCTCTCTTCACTCAGCTTAAATTTCTCCCTTCG 180
Query 180 AAAttttttttttttttCTTTTCTTGCGGATATGAGGAAACTTTGTCCGAATTACAACCT 239
||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 181 AAA-CCCTTTTTTTTTT-GTTT-TTGCGAATATGAGGAAACTTTGTCCGAATTACAACCT 237
Query 240 CGAAGACGGGTTAGAGACCGTCCTCGAGGTTCCCATGCCTGAGGAGTTATTTGCTGCGTC 299
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 CGAGGACGGGTTAGAGACCGTCCTAGAGGTTCCCATGCCTGAGGAGTTATTTGCTGCGTC 297
Query 300 CAAGACAAAACCGGGATGGAACCAAATGAAGTCTTACTGGTCAAAACCCACCGCCACTGC 359
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 298 CAAGACAAAACCTGGATGGAACCAAATGAAATCTTACTGGTCAAAACCTACCGCTACTGC 357
Query 360 AACCGGAACCGCAACAGCCACAAACATGACAAGACTCTTTGGTGGTCGCAACGCGGAGAT 419
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 358 TACCGGAACCGCAACAGCCACAAACATGACAAGACTCTTTGGTGGTCGTAATGCAGAGAT 417
Query 420 CCAGCTCCTTCTCGGAGTTGTTGGGGCTCCTTTGATCCCTCTCCCCGTTCAGCCTGAACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 418 CCAGCTCCTTCTCGGAGTTGTTGGGGCTCCTTTGATCCCTCTCCCCGTTCAGCCTGACCA 477
Query 480 ACAAAACGATTATGAGAATCCCATTCACAAAGACATCAAAGACCAACCTCTCGAGATGTC 539
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 CCATAACGATTATGAGAATCCCATCCACAAAGACATCAAAGACCAACCTCTCGAGATGTC 537
Query 540 GATGGCGCAATACATAGTGAAGCAGTACATAGCAGCGGTAGGAGGTGATCGGGCTTTAAA 599
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 538 GATGGCGCAATACATAGTAAAGCAGTACATAGCAGCGGTAGGAGGCGATCGAGCGTTAAA 597
Query 600 CGCGGTAGAGAGCATGTATGCGATGGGAAAAGTGAGGATGACAGCATCAGAGTTCTGTAC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 598 CGCGGTAGAGAGCATGTATGCGATGGGAAAAGTGAGGATGACAGCATCAGAGTTTTGCAC 657
Query 660 AGGGGAAGGAAGCCTGAACAGCAAGATGGTGAAGGCAAGGAGTATCAAGAGTGGAGGAGG 719
||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 658 AGGAGAAGGAAGCTTGAACAGCAAAATGGTAAAGGCAAGGAGTATCAAGAGTGGAGGAGG 717
Query 720 AGAAGTAGGAGGCTTTGTGTTGTGGCAGAAGGGAATAGAGTTATGGTGTCTTGAGCTCGT 779
||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 718 AGAAGTAGGAGGCTTTGTGCTGTGGCAAAAGGGGATAGAGTTATGGTGTCTTGAGCTTGT 777
Query 780 CGTCTCAGGCTGCAAAATCAGTGCCGGTAGTGACGCCAAAGTCGCTTGGAGACAAACTCC 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGTTTCAGGCTGCAAAATCAGTGCCGGTAGTGACGCCAAAGTCGCTTGGAGACAAACTCC 837
Query 840 ATGGCATCCTTCTCATGCCTCTCGTGGTCCTCCTAGACCATTGCGCCGTTTCCTCCAGGG 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGGCATCCTTCTCATGCCTCTCGTGGTCCTCCTAGACCATTGCGCCGTTTCCTCCAGGG 897
Query 900 TCTTGATCCAAAATCAACGGCTAATCTATTCGCGAGATCGGTATGCATGGGAGAGAAGAA 959
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 898 TCTTGATCCAAAATCAACGGCTAATCTATTTGCAAGATCAGTATGCATGGGAGAGAAGAA 957
Query 960 GATAAATGATGAAGACTGTTTCATACTCAAACTCGACGCTGAGCCATCCGCGCTTAAGGC 1019
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 958 GATAAATGATGAAGACTGTTTCATACTCAAACTTGATGCTGAGCCATCGGCGCTTAAGGC 1017
Query 1020 GAGAAGCAGCAGCAATGTTGAGATCATACGGCACACTGTGTGGGGATGTTTCAGCCAGAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAGAAGCAGCAGCAATGTTGAGATCATACGGCACACTGTGTGGGGATGTTTCAGCCAGAG 1077
Query 1080 AACAGGTCTTCTGATTCAACTTGAAGACTCTCACCTTCTAAGAATCAAAGCTCAAGACGA 1139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AACAGGTCTTTTGATTCAACTTGAAGACTCTCACCTTCTAAGAATCAAAGCTCAAGACGA 1137
Query 1140 TAATAGTATATTCTGGGAGACAACCATGGAGTCTTTGATCCAAGATTACAGGACCGTTGA 1199
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1138 TAACAGTATATTTTGGGAGACAACAATGGAGTCTTTGATCCAAGATTACAGGACCGTTGA 1197
Query 1200 TGGTATCCAGGTAGCACACGCTGGTAAAAGCTCGGTGTCTCTGTTTCGATTTGGTGAGAA 1259
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1198 TGGTATCTTGGTAGCACACGCTGGTAAAAGCTCGGTGTCTCTGTTTCGGTTTGGTGAGAA 1257
Query 1260 CTCGGATAATCACTCTAGGACTCGGATGGAAGAGACTTGGGAGATTGAGGAAATGGATTT 1319
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTCGGATAATCATTCGAGGACTCGGATGGAAGAGACTTGGGAGATTGAGGAAATGGATTT 1317
Query 1320 TAACATAAAGGGTTTGTCTATGGATTGTTTTTTACCGCCTTCTGATCTCAAGAAGGACGA 1379
|||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1318 TAACATTAAGGGTCTGTCTATGGATTGTTTTTTACCGCCTTCTGACCTGAAGAAGGACGA 1377
Query 1380 TGATGAAGAAGAAGAAATCGAATGTGGTTTAGCTGCTAATAATGAGAAGCTGCCTATGAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TGATGAAGAAGAAGAAATCGAATGTGGTTTAGCTGCTAATAATGAGAAGCTGCCTATGAA 1437
Query 1440 AATCCGAAGCGCTTCTTTGAGGATTAGTTCCTCAAAGATCTTAGCAATTGTGGAAGAAGA 1499
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1438 AATCCGAAGCGCTTCTTTGAGGATTAGTTCCTCAAAGGTCTTAGCAATTGTGGAAGAAGA 1497
Query 1500 AGATGAATGAGAGGCCACTGAAGAGACATAAAAGCATGGCCCGAGTTTCGGTTTATGTAC 1559
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1498 AGATGAATCAGAGGTCACTGAAGAGACATAAAAGCATGGCCTGAGTTTCGGTTTTTGTAC 1557
Query 1560 ATAA--TTTTTAATCTATTGAAACATGGAAACAGAGGAttttttctatttttggtttttG 1617
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ATAGCCTTTTTAATCTATTGCAACATGGAAACAGAGGATTTTTTCTATTTTTGGTTTTTG 1617
Query 1618 GGTTCCTCTGTAAATCACTGAACTCTTGGGATGCAAAATGCAATGCAAGTGATCAGTTCA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1618 AGTTCCTCTGTAAATCACTGAACTCTTGGGATGCAAAATGCAATGCAAGTGATCAGATCA 1677
Query 1678 TTCATAATACAATGAG 1693
||||||||||||||||
Sbjct 1678 TTCATAATACAATGAG 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5