BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487385
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05850.1 | Symbols: PIRL1 | plant intracellular ras group-re... 2700 0.0
AT3G11330.1 | Symbols: PIRL9 | plant intracellular ras group-re... 1007 0.0
> AT5G05850.1 | Symbols: PIRL1 | plant intracellular ras group-related
LRR 1 | chr5:1762405-1764678 REVERSE LENGTH=1876
Length=1876
Score = 2700 bits (1462), Expect = 0.0
Identities = 1605/1674 (96%), Gaps = 9/1674 (1%)
Strand=Plus/Plus
Query 1 cttcttcttcttctt-ctccaatttcccaattgtctcttctc-tcaagctctcAACAATG 58
||||||||||||||| || |||| ||||||| |||||||| | |||||||| ||||||||
Sbjct 15 CTTCTTCTTCTTCTTCCT-CAATCTCCCAATCGTCTCTTC-CATCAAGCTCCCAACAATG 72
Query 59 GCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTACGTCTTGGATCGTCTCCCT 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 73 GCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTATGTCTTGGATCGTCTCCCT 132
Query 119 TCCTTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGACCCACCACCATCCAAATCCGAT 178
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 133 TCATTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGAGCCACCACCATCCAAATCCGAT 192
Query 179 CCTTCTTCATCATCAAACCACTCTATCGAGATCGTGACTCAGATGCCTCACTTGGCTCAT 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 193 CCTTCTTCATCATCAAACCACTCTATCGAGATAGTGACTCAGATGCCTCACTTGGCTCAT 252
Query 239 CCTGATGTTCTTGCCTCCATGACTAACGCTATCGCCGACGTTGCTCAGACCCGATCCGTT 298
||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||
Sbjct 253 CCTGATGTTCTTGCCTCCATGACTAACGCAACCGCCGACGTTTCTCAGACCCGATCTGTT 312
Query 299 CTTCGAACCCTAGGACCTAGACCTGATCACGAAACCGTCGACAAAGCTCGTGCCAGGCTC 358
||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 313 CTTCGAACCCTAGGACCAAGACCCGATCACGAAACCGTCGACAGAGCTCGTGCTAGGCTC 372
Query 359 CGTGAGATCGACGCGTCTTTGTCGGAATCTTTCGAAGAGATCGCTCTCTCTCCGAACGAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 373 CGTGAGATCGACGCGTCTTTGTCGGAATCTTTCGAAGAGATCGCTCTCTCTCCTAACGAT 432
Query 419 ATTGACGTGGCGGAGAAGGAACTGAAGAGGAGAGAAGCTGTGGATCAAGAGAAGACTTGG 478
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 433 ATTGACGTGGCGGAGAAGGAACAGAAGAGGAGAGAAGCTGTGGAGCAAGAGAAGATTTGG 492
Query 479 TATAACTCGATCCTTAAGCTTAACGAGCTTCATGAATCTTATGAGAAGCTTTTGAAAGAA 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TATAAATCGATCCTTAAGCTTAACGAGCTTCATGAATCTTATGAGAAGCTTTTGAAAGAA 552
Query 539 GCAGAGGAGAGGCTCGTGAGGATCTATGAGTCCGCCGAGAAGAATGCGGCCGCGGTGGCG 598
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 553 GCAGAGGAGAGGCTCGTGAGGATCTATGAGTCTGCCGAGAAGAATGCTGCCGCGGTGGCG 612
Query 599 GAGGAGGAAGCTGCGGTGGTTGAAGTTAATGAAGAGGTTGTCAGTATACTGCAACAAGCT 658
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 613 GAGGAGGAAGCTGCGGAGGTTGAAGTCAATGAAGAGGTTGTGAGTATACTGCAACAAGCT 672
Query 659 GCGGTGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGAAATTGAAATTGCTTCCTGAA 718
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 673 GCGGAGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGAAATTGAAGTTGCTTCCTGAA 732
Query 719 GCATTTGGAAAGATTCAAGGTCTCCTTGTTCTTAATCTCTATAACAATCAGCTTGAGGCT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 733 GCATTTGGAAAGATTCAAGGTCTCCTTGTTCTTAATCTCTATAACAATCAGCTTCAGGCT 792
Query 779 ATTCCTGATTCGATAGCTGGTTTGCAAAACCTTCTCGAACTCGATGTTTCCACGAATTTT 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 793 ATTCCTGATTCGATAGCTGGTTTGCATAACCTTCTCGAACTCGATGTTTCCACTAATTTC 852
Query 839 TTAGAGACATTACCCGATTCGATCGGTTTATTGTCAAAGTTGAAGATTTTGAATGTCTCT 898
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CTGGAGACATTACCAGATTCGATCGGTTTATTGTCAAAGTTGAAGATTTTGAATGTCTCT 912
Query 899 TGTAACAAACTCACAACTTTACCAGATTCCATCTGCCATTGTGGATCTTTGGTTGTCTTG 958
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 913 TGTAACAAACTCACAACTTTACCAGATTCCATCTGCCATTGTGGATCGTTGGTTGTCTTG 972
Query 959 GATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATTGGATTCGAGCTAGTGAAA 1018
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 973 GATGCGAGCTACAACAATCTCACCTACTTACCAACAAACATCGGATTCGAGCTAGTGAAA 1032
Query 1019 GTAGAGAAGCTCTTGATCCATCTCAACAAAATCAGATCATTACCAACTTCCATTGGTGAA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTAGAGAAGCTCTTGATCCATCTCAACAAAATCAGATCATTACCAACTTCCATTGGTGAA 1092
Query 1079 ATGAGATCCTTACGCTACCTCGATGCACACTTCAACGAACTCAACGGTCTCCCAAATTCT 1138
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1093 ATGAGATCCTTACGCTACCTCGATGCACACTTCAACGAACTCAATGGTCTCCCAAATTCT 1152
Query 1139 TTCGGGCTGCTCACGAACCTCGAGTACCTTAACCTGAGCAGTAACTTCAGCGATCTCCAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TTCGGGCTGCTCACGAACCTCGAGTACCTTAACCTGAGCAGTAACTTCAGCGATCTCCAA 1212
Query 1199 GATCTACCTGCTTCATTTGGCGATCTCATAAGCCTCCAAGAACTCGACTTGAGCAACAAC 1258
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GATCTCCCTGCTTCATTCGGAGATCTCATAAGCCTCCAAGAACTCGACTTGAGCAACAAC 1272
Query 1259 CAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCGTGAACCTGACCAAACTGAACTTG 1318
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1273 CAGATCCATTCTCTTCCAGACGCTTTTGGCACGCTCGTGAACTTGACCAAACTGAACTTG 1332
Query 1319 GACCAAAACCCGCTCGTGGTCCCGCCTGAGGAAGTCGTGAAACAAGGCGTGGATGCGGTT 1378
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1333 GACCAAAACCCGCTTGTTGTCCCGCCTGATGAAGTCGTGAAACAAGGTGTGGATGCGGTT 1392
Query 1379 AAAATGTATATGGGTAAGAGATGGGTCAGTATGTTGGAAGAGGAAGAGAAGATGGCGAAT 1438
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1393 AAAATGTATATGGGTAAGAGATGGGTCAGCATGTTGGAAGAGGAAGAGAAGATGGCGAAT 1452
Query 1439 ATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCACCCGAACCACATCGAAGCTG 1498
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1453 ATGAAGGATGAGATGGATCAGACAAACACCGATTGGCTCACCCGAACCACCTCGAAGCTG 1512
Query 1499 AAAACGTATGTTACTGAGGTCTCAGAGTATCTTGGCTCGAATTCGCCTAGAGATCCTTAC 1558
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1513 AAAACGTATGTTACTGAGGTCTCGGAGTATCTTGGCTCGAATCCGCCTAGAGATCCTTAC 1572
Query 1559 CTTGACCAGCAGCTATGAAATGGCTTTGAGCTTCATTTAACATTTTCTTGATGATGTCTG 1618
|||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||| |||
Sbjct 1573 CTTGACCAGCAGCTATGAAATGACTTTGAGCTTCATTTTACATTTTCGTGACGATATCTC 1632
Query 1619 AAGAATCAGTTTCCACTCCAAAGTGATCTTCAGTCTTCAGATTTCCTTCCGCTG 1672
||| ||||||||||| || ||||||||||||||| || |||||| ||||||
Sbjct 1633 AAGTATCAGTTTCCA----AA-GTGATCTTCAGTCTTGAGTTTTCCTGCCGCTG 1681
> AT3G11330.1 | Symbols: PIRL9 | plant intracellular ras group-related
LRR 9 | chr3:3551974-3554763 REVERSE LENGTH=1924
Length=1924
Score = 1007 bits (545), Expect = 0.0
Identities = 1227/1550 (79%), Gaps = 71/1550 (5%)
Strand=Plus/Plus
Query 52 AACAATGGCGACGGAGCTTAACCCTAAGAACTTCCCTGTTCTCTCTTACGTCTTGGATCG 111
|||||||||| | || | |||||||||||| |||||||| |||||||| ||||||| |||
Sbjct 65 AACAATGGCGGCAGAACCTAACCCTAAGAATTTCCCTGTCCTCTCTTATGTCTTGGCTCG 124
Query 112 TCTCCCTTCCTTCACCGCCAAATCCTCTTCCTCTTCCGATGTCGACCC-ACCACCATCCA 170
||||||||| ||||||||||||||| ||||||| |||| | || ||| | | |||| |
Sbjct 125 TCTCCCTTCTTTCACCGCCAAATCCCCTTCCTCCTCCG-T-TCCTCCCTTCGA-CATCGA 181
Query 171 A-ATCCGATCCTTCTTCATCATCA-AACCACTCTATCGAGATCGTGACTCAGATGCCTCA 228
| | || | || | ||||||||| | || || || |||||||| ||||||||||||||
Sbjct 182 ACAACC-A-CCACCATCATCATCATCATCA-TCGATTGAGATCGTCACTCAGATGCCTCA 238
Query 229 CTTGGCTCATCCTGATGTTCTTGCCTCCATGACTAA-CGCTATCGCCGACGTTGCTC-AG 286
||| | || || |||||||| || || ||||| || || ||| | ||||| || | ||
Sbjct 239 CTTAACACAACCAGATGTTCTCGCTTCAATGAC-AAGTGCGATCTCTGACGTCGC-CGAG 296
Query 287 ACCCGATCCGTTCTTCGAACCCTAGGACCTAGACCTGATCACGAAACCGTCGACAAAGCT 346
|| ||||| | ||||||||||||||||||||||| ||||||||| | ||||| || |||
Sbjct 297 ACTCGATCTATCCTTCGAACCCTAGGACCTAGACCAGATCACGAATCAGTCGATAAGGCT 356
Query 347 CGTGCCAGGCTC-CGTGAGATCGACGCG-TCTTTGTCGGAATCTTTCGAAGAGATCGCTC 404
||||| | ||| || || ||||| || || || || ||||| ||||| || |||| |
Sbjct 357 CGTGCTAAACTCTCG-GAAATCGAATCGTTC-TTATCTGAATCGTTCGAGGATATCG--C 412
Query 405 TCTCTCCGAA-CGATATTGACGTGGCGGAGAAGGAACTGAAGAGGAGAGAAGCTG-TGGA 462
| | || || | || | ||||| ||| || |||||||||| ||| | ||||
Sbjct 413 -GT-T---AACCG--A-TG-C--GGCGGCGAAAGATGAGAAGAGGAGACAAG-AGATGGA 460
Query 463 TCAAGAGAAGACTTGGTATAACTCGATCCTT-AAGCTTAACGAGCTTCATGAATCTTATG 521
||| ||||||||||||| | | ||||| || |||||| | ||| |||||| || ||||
Sbjct 461 TCAGGAGAAGACTTGGTGTGAGTCGAT-TTTGAAGCTTGATGAGGTTCATGCTTCGTATG 519
Query 522 AGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTCGTGAGGATCTATGAGTCCGCCGAGAAGA 581
||||||||||||||||||||||||||||||| || ||||| ||||| || || |||||||
Sbjct 520 AGAAGCTTTTGAAAGAAGCAGAGGAGAGGCTTGTTAGGATTTATGAATCTGCTGAGAAGA 579
Query 582 ATGCGGCCGCGGTGGCGGAGGAGGAA-GCTGCGG-TGGTTGAAGTTAATGAAGAGGTTGT 639
||||||| | | || |||||| || | ||||| || | || |||||||| ||||||||
Sbjct 580 ATGCGGC-G-GA-GGATGAGGAG-AATGTTGCGGCTG-TGGAGGTTAATGAGGAGGTTGT 634
Query 640 CAGTATACTGCAACAAGCTGCGG-TGAATCCATTGGACCGAGTTGATTTGTCTGGTCGGA 698
| ||| |||| || ||| | | | ||||| |||| || |||||||||||||| |||
Sbjct 635 TGGGATATTGCAGCATGCTTCTGCT-AATCCGGTGGATCGTGTTGATTTGTCTGGGAGGA 693
Query 699 AATTGAAATTGCTTCCTGAAGCATTTGGAAAGATTCAAGG-TCTCCTTGTTCTTAATCTC 757
|| ||| ||||| |||||||| ||||| | ||||||||| | | |||||||||||||||
Sbjct 694 AACTGAGGTTGCTACCTGAAGCTTTTGGGAGGATTCAAGGGT-TGCTTGTTCTTAATCTC 752
Query 758 TATAACAATCAGCTTGAGGCTATTCCTGATTCGATAGCTGGTTTGCAAAACCTTCTCGAA 817
| |||||| |||||||| | ||||||||||| || ||||| ||||| | ||| | |||
Sbjct 753 TCCAACAATAAGCTTGAGTCGATTCCTGATTCAATTGCTGGATTGCATAGTCTTGTTGAA 812
Query 818 CTCGATGTTTCCACGAATTTTTTAGAGACATTACCCGATTCGATCGGTTTATTGTC-AAA 876
|| ||||| |||||||||| | | ||||||||||| ||||| ||||||||| |||| |||
Sbjct 813 CTGGATGTCTCCACGAATTCTCTGGAGACATTACCTGATTCCATCGGTTTACTGTCCAAA 872
Query 877 GTTGAAGATTTTGAATGTCTCTTGTAACAAACTCACAACTTTACCAGATTCCATCTGCCA 936
| || || ||||||| || |||||| |||||| | || || || ||||||||||
Sbjct 873 CTAAAA-ATCCTGAATGTTTCGACTAACAAGCTCACATCCTTGCCTGACTCCATCTGCCG 931
Query 937 TTGTGGATCTTTGGTTGTCTTGGATGCGAGCTACAACAATCTCACCTACTTACCAACAAA 996
||||| || |||||| ||||||| | ||||| |||| ||||||||||||||| || ||
Sbjct 932 CTGTGGGTCGTTGGTTATCTTGGACGTGAGCTTCAACCGTCTCACCTACTTACCGACCAA 991
Query 997 CATTGGATTC-GAGCTAGTGAAAGTAGAGAAGCTCTTGATCCA-TCTCAACAAAATCAGA 1054
||| || | | ||||||||||| |||| |||||| || | || | | ||||| ||| ||
Sbjct 992 CATCGG-TCCTGAGCTAGTGAATCTAGAAAAGCTCCTGGTTCAGTAT-AACAAGATCCGA 1049
Query 1055 TCATTACCAACTTCCATTGGTGAAATGAGATCCTTACG-CTACCTCGATGCACACTTCAA 1113
|| || || || || || |||||||||||| || | ||||||| || ||||||||
Sbjct 1050 TCCTTCCCGACCAGTATAGGCGAAATGAGATCCCTAAAAC-ACCTCGACGCCCACTTCAA 1108
Query 1114 CGAACTCAACGGTCTCCCAAATTCTTTCGGGCTGCTCACGAACCTCGAGTACCTTAA-CC 1172
|||||| ||||| || || ||||||||| | ||||||| || ||||||||| |||| ||
Sbjct 1109 CGAACTTAACGGCCTTCCTGATTCTTTCGTGTTGCTCACAAATCTCGAGTAC-TTAAACC 1167
Query 1173 TGAGCAGTAACTTCAGCGATCTCCAAG-ATCTACC-TGCTTCATTTGGCGATCTCATAAG 1230
| ||||| |||||||| |||||| ||| |||| || | || |||| ||||| ||||||||
Sbjct 1168 TAAGCAGCAACTTCAGTGATCTC-AAGGATCTCCCATTCT-CATTCGGCGAACTCATAAG 1225
Query 1231 CCTCCAAGAACTCGACTTGAGCAACAACCAGATCCATTCTCTTCCAGACGCTTTTGGCAC 1290
||||||||||||||||||||| |||||||| |||||| | || || ||| ||||||||||
Sbjct 1226 CCTCCAAGAACTCGACTTGAGTAACAACCAAATCCATGCCCTCCCTGACACTTTTGGCAC 1285
Query 1291 GCTCGTGA-A-CCTGACCAAACTGAACT-TGGACCAAAACCCGCTCGTGGTCCCGCCTGA 1347
|| ||| | ||||||||||||||| | |||| || ||||||||||| ||||| || ||
Sbjct 1286 ACT--TGATAGCCTGACCAAACTGAA-TGTGGATCAGAACCCGCTCGTCGTCCCACCCGA 1342
Query 1348 GGAAGTCGTGAAACAAGGCGTGGATGCGGTTAAAATGTATATGGGTAAGAGATGGGTCAG 1407
|||||| ||||| |||| || || || || || | ||| |||||| ||||| || ||||
Sbjct 1343 GGAAGTGGTGAAGGAAGGTGTTGAAGCTGTGAAGACGTACATGGGTCAGAGAAGGATCAG 1402
Query 1408 TATGTTGGAAGAGGAAGAGAAGATGGCGAATATGAAGGATGAGATGGATCAGACAAACAC 1467
|||||||||||| |||||||||| | || ||| |||| |||||||| ||| ||||| |
Sbjct 1403 TATGTTGGAAGAAGAAGAGAAGAAGA--AA-ATGGAGGAAGAGATGGAGCAGGCAAACGC 1459
Query 1468 CGATTGGCTCACCCGAACCACATCGAAGCTGAAAACGTATGTTACTGAGGTCTCAGAGTA 1527
|| |||||||| ||||||||||||||||||||||| ||||| | || || ||||||||
Sbjct 1460 CGGGTGGCTCACACGAACCACATCGAAGCTGAAAACATATGTCGCAGATGTTTCAGAGTA 1519
Query 1528 TCTTGGCTCGAATTCGCCTAGAGATCCTTACCTTGACC-AGCAGCTATGA 1576
||| || || ||||| ||| |||| ||||||||||| | | |||||||||
Sbjct 1520 TCTCGGATCAAATTCTCCTCGAGACCCTTACCTTGAACGA-CAGCTATGA 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82630097070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5