BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487392
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05920.1 | Symbols: DHS, EDA22 | deoxyhypusine synthase | ch... 1784 0.0
> AT5G05920.1 | Symbols: DHS, EDA22 | deoxyhypusine synthase |
chr5:1777547-1779826 REVERSE LENGTH=1468
Length=1468
Score = 1784 bits (966), Expect = 0.0
Identities = 1153/1238 (93%), Gaps = 34/1238 (3%)
Strand=Plus/Plus
Query 1 ATTTGTCAGCAAAGATTCGTTTGAAGATGGTTCCATCTTTATTCCGTT-TACTAG-A--- 55
|||||||||||||||||||||||||||| ||| |||||||||||| || |||| |
Sbjct 1 ATTTGTCAGCAAAGATTCGTTTGAAGATAGTT-CATCTTTATTCC-TTCCCCTAGAACCC 58
Query 56 -AGAAC-CCTAGAA--CTC-AC-AAAAC-CCTCCAGATCCAGGGAAATCAA---T-T--T 102
||||| || | || ||| || | || | | |||||||| ||||||||| | | |
Sbjct 59 TAGAACTCCCAAAACCCTCTACTACTACACTTTCAGATCCAAGGAAATCAATTTTGTCAT 118
Query 103 T---G----ATGGA-G--GATCGTGTTTTCTCTTCGGTTCACTCAACAGTTTTCAAAGAA 152
| | ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCGAGCAACATGGAGGATGATCGTGTTTTCTCTTCGGTTCACTCAACAGTTTTCAAAGAA 178
Query 153 TCCGAATCGCTAGAAGGAAAGTGTGATAAAATCGAAGGATACGATTTCAATCAGGGAGTG 212
|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 TCCGAATCATTGGAAGGAAAGTGTGATAAAATCGAAGGATACGATTTCAATCAAGGAGT- 237
Query 213 A-ATTACCCAAAGCTTATGCGATCCATGCTCACCACTGGATTTCAAGCCTCTAATCTCGG 271
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 238 AGATTACCCAAAGCTTATGCGATCCATGCTCACCACCGGATTTCAAGCCTCGAATCTCGG 297
Query 272 CGAAGCTATTGATGTCGTCAATCAAATGCTAGATTGGAGACTGGCTGATGAAACTATAGT 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 CGAAGCTATTGATGTCGTCAATCAAATGCTAGATTGGAGACTGGCTGATGAAACTACAGT 357
Query 332 ATCTGAAGACTGTAGTGCAGAGGAGAAAG-ACCCATCGTATAGAGAGTCTGTCAAGTGTA 390
| ||||||||||||||| ||||||| ||| | ||||||| ||||||||||||||||||||
Sbjct 358 AGCTGAAGACTGTAGTGAAGAGGAG-AAGAATCCATCGTTTAGAGAGTCTGTCAAGTGTA 416
Query 391 AAATCTTTCTGGGTTTCACTTCCAATCTTGTTTCATCTGGTGTTAGAGATACTATTCGTT 450
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 417 AAATCTTTCTAGGTTTCACTTCAAATCTTGTTTCATCTGGTGTTAGAGATACTATTCGTT 476
Query 451 ATCTTGTTCAGCATCATATGGTTGATGTTATAGTCACTACAACTGGTGGTGTTGAGGAAG 510
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 ATCTTGTTCAGCATCATATGGTTGATGTTATAGTCACGACAACTGGTGGTGTTGAGGAAG 536
Query 511 ATCTCATTAAATGCCTTGCACCTACATTTAAAGGTGATTTCTCTCTACCTGGAGCTTATC 570
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATCTCATAAAATGCCTTGCACCTACATTTAAAGGTGATTTCTCTCTACCTGGAGCTTATT 596
Query 571 TACGGTCAAAGGGATTGAACCGGATTGGGAACTTGCTCGTTCCTAATGATAACTACTGCA 630
|| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 597 TAAGGTCAAAGGGATTGAACCGAATTGGGAATTTGCTGGTTCCTAATGATAACTACTGCA 656
Query 631 AGTTTGAGGATTGGATCATTCCTATATTTGATGAGATGTTGAAGGAACAGAAAGAAGAGA 690
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 657 AGTTTGAGGATTGGATCATTCCCATCTTTGACGAGATGTTGAAGGAACAGAAAGAAGAGA 716
Query 691 ATGTGTTGTGGACACCTTCTAAACTGTTAGCACGGCTGGGAAAAGAAATCAACAATGAGA 750
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATGTGTTGTGGACTCCTTCTAAACTGTTAGCACGGCTGGGAAAAGAAATCAACAATGAGA 776
Query 751 GTTCATACCTTTATTGGGCTTACAAGATGAATATTCCAGTATTCTGCCCGGGGTTAACAG 810
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 777 GTTCATACCTTTATTGGGCATACAAGATGAATATTCCAGTATTCTGCCCAGGGTTAACAG 836
Query 811 ATGGCTCTCTCGGAGATATGCTGTATTTTCACTCCTTTCGTACCTCTGGCCTTATCATCG 870
|||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 837 ATGGCTCTCTTGGGGATATGCTGTATTTTCACTCTTTTCGTACCTCTGGCCTCATCATCG 896
Query 871 ATGTAGTGCAAGATATCAGAGCTATGAACGGTGAAGCTGTTCATGCAACTCCGAGAAAGA 930
||||||| ||||||||||||||||||||||| |||||||| ||||||| ||| | |||||
Sbjct 897 ATGTAGTACAAGATATCAGAGCTATGAACGGCGAAGCTGTCCATGCAAATCCTAAAAAGA 956
Query 931 CAGGGATGATAATCCTTGGAGGGGGCTTGCCGAAGCACCACATATGTAATGCCAATATGA 990
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 CAGGGATGATAATCCTTGGAGGGGGCTTGCCAAAGCACCACATATGTAATGCCAATATGA 1016
Query 991 TGCGTAATGGAGCAGATTACGCTGTATTCATAAACACCGGGCAAGAATTTGATGGGAGCG 1050
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1017 TGCGCAATGGTGCAGATTACGCTGTATTTATAAACACCGGGCAAGAATTTGATGGGAGCG 1076
Query 1051 ACTCGGGTGCACGCCCTGATGAAGCCGTGTCTTGGGGTAAAATTAGGGGTTCTGCTAAAA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACTCGGGTGCACGCCCTGATGAAGCCGTGTCTTGGGGTAAAATTAGGGGTTCTGCTAAAA 1136
Query 1111 CCGTTAAGGTATACTGTGATGCTACCATAGCCTTCCCATTGTTGGTTGCAGAAACATTTG 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCGTTAAGGTATACTGTGATGCTACCATAGCCTTCCCATTGTTGGTTGCAGAAACATTTG 1196
Query 1171 CCACAAAGAGAGACCAAACCTGTGAGTCTAAGACATAA 1208
|||||||||||||||||||||||||||||||||| |||
Sbjct 1197 CCACAAAGAGAGACCAAACCTGTGAGTCTAAGACTTAA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59337044190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5