BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487393
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05930.1 | Symbols: ATGC1, GC1 | guanylyl cyclase 1 | chr5:1... 1746 0.0
> AT5G05930.1 | Symbols: ATGC1, GC1 | guanylyl cyclase 1 | chr5:1779974-1783412
REVERSE LENGTH=1478
Length=1478
Score = 1746 bits (945), Expect = 0.0
Identities = 1199/1314 (91%), Gaps = 47/1314 (4%)
Strand=Plus/Plus
Query 1 Tgaaggatgaataagaag-a-acaagacaacaataacaagaagaagaaaagattgaaatt 58
|||||||||||||||||| | ||||| || || || |||||||||||||||||||||||
Sbjct 1 TGAAGGATGAATAAGAAGAAGACAAG--AATAAGAAGAAGAAGAAGAAAAGATTGAAATT 58
Query 59 agaacaatCTCAGGATTCGTCGCTATCCCAAGACCaaaaacaac-aa--aaaacacgaaa 115
|||| |||||||||||||||||||||||||||| |||||| ||| || ||||||||| |
Sbjct 59 AGAATAATCTCAGGATTCGTCGCTATCCCAAGAGCAAAAA-AACAAATGAAAACACGAGA 117
Query 116 aacGTGAAGATACAGGTCCTCGTCTCCTTTATCC--A----AAACCTTTTTGATTTCCCC 169
||||||||||||||| ||| |||||||||||||| | |||||||||| |||| |||
Sbjct 118 AACGTGAAGATACAGCTCC-CGTCTCCTTTATCCAAATTCCAAACCTTTTTCATTTTCCC 176
Query 170 AGAAAAATT--G-AGT-A--ACAAAACTCTTCTTCATCTGGGTTAAAGCCAACAAGCTCT 223
|| |||||| | ||| | | ||||||| || || || || || | | || ||
Sbjct 177 AGGAAAATTGAGTAGTAATTAGAAAACTCATCGTC--CT-CATT-GAG-CTGC-AGATCC 230
Query 224 C-TAATCATCTCTCGCTCGCT-GTCTCTCTTGCATCTTAAGCAAAGGTATATTCTATCCA 281
| ||||| |||||||| | | |||| |||||||||||| ||||||| |||| |||||
Sbjct 231 CATAATC-TCTCTCGC-CAATCATCTCCCTTGCATCTTAATCAAAGGTGTATTATATCCG 288
Query 282 CAAAC-AGATCATTAGAGAAGGCTGTTACAAGTGTGTTTTATGACCACGTAACAGCGCAC 340
| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 289 C-AACAAGATCATTAGAGAAGGCTGTTACAAGTTTGTTTTATGACCGCGTAACAGCTCAC 347
Query 341 TTGGTAATTTGATGTGGCCTCTTTGTTTTCTACTTAACAAGCTATTAAGAGTTGAAGAGA 400
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 348 TTGGTAA-TTGATGTGGCCTCTTTGTTTTCTGCTTAACAAGCTATTAAGAGTTGAGGAGA 406
Query 401 GGAATCAGGGGAGACTAGAAGGACATGGAGATTCGACTTCTCCGAAATACTGCCAATTCG 460
|||||||||||| | |||| ||| ||||||||||||||| |||||||||||||| |||||
Sbjct 407 GGAATCAGGGGATATTAGACGGAAATGGAGATTCGACTTTTCCGAAATACTGCCTATTCG 466
Query 461 ATGATCCGTTGGTGAGTGATGGAAAGTATC-GAGATGCAGGGTTGCCATCCTCGTCCCAC 519
||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 467 ATGATCCCTTGGTGAGTGATGGAAAGTA-CAGAGATGCAGGGTTGCCATCCTCGTCCCAC 525
Query 520 ATTGAGGTCCCTCATGTACATCAGTTAGCTTCATGGGATTGCGGTCTCGCTTGTGTTCTT 579
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATGGATGTCCCTCATGTACATCAGTTAGCTTCATGGGATTGCGGTCTCGCTTGTGTTCTT 585
Query 580 ATGGTTCTCAGAGCAAGTGGCATCGCAAGCTGCACTCTTGAGGATTTGGCTGAGATTTGC 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 586 ATGGTTCTCAGAGCAAGTGGCATCGCAAGCTGCACTCTTGAGGATTTGGCTGAGATATGC 645
Query 640 TCCACAAATAGCATTTGGACTGTAGATCTCGCATATTTACTGCAGAAGTTCTGTGTGGAA 699
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 646 TCCACAAATAGCATTTGGACTGTCGATCTCGCATATTTACTGCAGAAGTTCTGTGTGGAA 705
Query 700 TTTTCCTATTACACGATAACATTTGGAGCAAACCCGAATTATTCCATTGAGGAGTTTTAC 759
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 706 TTTTCATATTACACGATAACATTTGGAGCAAACCCGAATTATTCCATAGAGGAATTTTAC 765
Query 760 AAGGAGCAGCTCCCTGAAGATCTGGTGCGTGTGGATTTGCTCTTCAGGAAAGCACATGAA 819
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 766 AAGGAGCAGCTCCCTGAAGATCTGGTGCGTGTCGATTTGCTCTTCAGGAAAGCACATGAA 825
Query 820 TCTGGCATTATTATACAGTGCAGATCAGTTAGTATCCATGAGATATCTTGTTTGCTATTG 879
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 826 TCTGGCATTATTATACAGTGCAGATCAGTTAGTATCCATGAGATTTCTTGTTTGCTATTG 885
Query 880 TCCGGGAACTATATTGCCATTGCGTTAGTCGACCAGGACAAGCTAAGCAAGTCTTGGTTG 939
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TCGGGGAACTATATTGCCATTGCGTTAGTCGACCAGGACAAGCTAAGCAAGTCTTGGTTG 945
Query 940 GAGGAAGTGATTGTCGCTGGTCTTCACTCCAGCAACTCCTGCTACACTGGTCACTATATC 999
||||||||| ||||| ||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 946 GAGGAAGTGCTTGTCTCTGGTCTTCACTCCAGCAATTCTTGTTACACTGGTCACTATGTC 1005
Query 1000 GTGATATGTGGCTATGATGCTGTTAGAGATGAGTTCGAGATCAGAGATCCCGCCAGTTCC 1059
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1006 GTGATATGTGGCTATGATGCTGTTAGGGATGAGTTCGAGATCAGAGATCCCGCCAGTTCC 1065
Query 1060 AAGATACATGAGAGGATATCATCAAAATGCCTGGAGAATGCCCGGAAATCGTATGGTACA 1119
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| |||
Sbjct 1066 AAGATACATGAGAGGATCTCGTCAAAATGCCTGGAGAATGCCCGGAAATCGTTTGGCACA 1125
Query 1120 GATGAAGATCTTCTCCTGATAAATTTGGAGAATATAAGGAACCAGAAGGGATATTAGAAT 1179
|| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1126 GACGAAGATCTTCTCCTGATAAACTTGGAGAATATGAGGAACCAGAACGGATATTAGAAT 1185
Query 1180 AGTTGTCATCATCATCATCAAATGAATTCTGGATCAGAATGAAACCTGGAGTGTTTTCTC 1239
||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||
Sbjct 1186 AGTTGTCATCATCATCATCAAATCAGTTCTGGATGAGAATGAAACCTG-AGTGTTTTCTC 1244
Query 1240 CCA-AA-A----G-G-TGAAAAGTATACGTCT--ATACATACGTCTTTACATAT 1283
||| || | | | |||||||||||||||| ||||||||||||||||||||
Sbjct 1245 CCAGAAGAACATGAGGTGAAAAGTATACGTCTCTATACATACGTCTTTACATAT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5