BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487395
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05950.1 | Symbols: MEE60 | maternal effect embryo arrest 60... 1085 0.0
> AT5G05950.1 | Symbols: MEE60 | maternal effect embryo arrest
60 | chr5:1788767-1789438 FORWARD LENGTH=672
Length=672
Score = 1085 bits (587), Expect = 0.0
Identities = 639/663 (96%), Gaps = 7/663 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTGATTCGCGGGATCTGCCGGAGAG-AAAATGACGACGAGTATTCACATCACAGC 59
||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 14 TCTCTCTGATTGGCCGGATCTGCCGGAGAGAAAAATGACGACGAGTATTCACATCACAGC 73
Query 60 TCTCGACGGAATCGTCAACGTGAACTCTCTCTTCACACTCGCCGTATTCATCGGATTAGC 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 74 TCTCGACGGAATCGTCAACGTGAACTCACTCTTCACACTCGCCGTATTCATCGGATTAGC 133
Query 120 TTGGAACCCTACCGATCCAGACAACAGCCTCGTAACCGACCCTAATTGTGTCCCCACAGC 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 134 TTGGAACCCTACCGATCCAGACAACAGCCTCGTAACCGACCCTAATTGCGTCCCCACAGC 193
Query 180 TCGTATGGCGGAGAATCTCGTCGCCTTCCATGTCTACTCTTTCGCTTCGTTCCTATTCTC 239
||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 194 TCGTATGGCTGAGAATCTCGTCGCCTTCCATGTGTACTCTTTCGCATCATTCCTATTCTC 253
Query 240 AAGTCTCATCGCTCTAGGTCTCAAACAAGCCATGAGGCTCAACATAGCTTCTTCGTTTCA 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 254 AAGTCTCATCGCTCTAGGTCTCAAACAAGCAATGAGGCTCAACATAGCTTCTTCGTTTCA 313
Query 300 CATCTCTACTCGAATCGATCCTGTGGTGTACTATGTGAACAAGACTGCTCTTAGATTTGG 359
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 314 CATCTCTACTCGAATCGATCCTGTGGTTTACTATGTGAACAAGACGGCTCTTAGATTTGG 373
Query 360 GATGGTTATC-TCCGGTTTGGGATCGGTTTGTGGATGTGGGTTTCTCATGTTGGCTTTGA 418
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GATGGTTA-CATCCGGTTTGGGATCGGTTTGTGGATGTGGGTTTCTCATGTTGGCTTTGA 432
Query 419 TTAATGTTGTTCAGATCAAGCTTGGGACTTTGGGTTGTGGTGCTAGTGGTCATACTTATG 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 433 TTAATGTTGTTCAGATCAAGCTTGGGACTTTGGGCTGTGGTGCTAGTGGTCATACTTATG 492
Query 479 CAGCTGTTGTGCCGCTTGTGATTCTGGTTCCTTCTGCACTTTTTATCTATGTTTCTCTTA 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 493 CAGCTGTTGTGCCGCTTGTGATTCTGGTTCCTTCTGCACTTTTCATCTATGTTTCTCTTA 552
Query 539 TGCTATATGCTTTTACTCGTTAGAGACATGGTTTT-GATTCCATGATTGATGCAATTAGG 597
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 553 TGTTATATGCTTTTACTCGTTAGAGACATGGTTTTTGATTCCATGGTTGATGCAATTAGG 612
Query 598 ATTATGTTTGTATGATGATGATATATGATGGGAAATGAGAATGATTCTATGCTTGATATG 657
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 613 GTTATGTTTGTATGATGATGATAT--GATGG-AAATGAGAATGATTCTATGTTTGATATG 669
Query 658 GTT 660
|||
Sbjct 670 GTT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5