BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487396

Length=494
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05960.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   649    0.0  


> AT5G05960.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:1790231-1790833 
FORWARD LENGTH=515
Length=515

 Score =  649 bits (351),  Expect = 0.0
 Identities = 403/429 (94%), Gaps = 0/429 (0%)
 Strand=Plus/Plus

Query  1    ATATGCATCAAGTCATCTCTCAAGAATGGAAACCCATGTTTTATCTCGCATTTTCCTCCT  60
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATATGCATCAACTCATCACTCAAGAATGGAAACCCATGTTTTATCTCGCATTTTCCTCCT  60

Query  61   AGTTCTCTGCATCTACAGCCTTAAAACCATGGTTGATGGGGCTGGAGAATGTGGGCGAAA  120
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  61   AGTTCTCTGCATCTACAGCCTTAAAACCATGGTTTATGGGGCTGGAGAATGTGGGAGAAA  120

Query  121  TCCCCCAGATAGAGAAGCCATAAAGCTGGCTCCTTGTGCAATGGCTGCACAAGACACATC  180
            ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  121  TCCTCCAGACAGAGAAGCCATAAAGTTGGCTCCTTGTGCAATGGCTGCACAAGACACATC  180

Query  181  TGCTAGAGTGTCTCCAACTTGCTGTGCTCGAGTGAAACAGATGGGACAGAACCCGAAATG  240
            ||||| ||||||  ||| ||||||||||||||||||||||||||| ||||| || |||||
Sbjct  181  TGCTAAAGTGTCAGCAATTTGCTGTGCTCGAGTGAAACAGATGGGGCAGAATCCAAAATG  240

Query  241  CCTTTGTGCAGTCATGCTTTCTTCCACAGCTAGGAGCTCTGGAGCAAAGCCAGAGATCTC  300
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  241  CCTTTGTGCTGTCATGCTTTCTTCCACAGCTAGGAGCTCCGGAGCAAAGCCAGAGATCTC  300

Query  301  AATGACCATTCCTAAACGCTGCAACATCGCTAATCGTCCCATTGGTTACAAGTGTGGAGC  360
             ||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct  301  GATGACTATTCCTAAACGCTGCAACATCGCTAATCGTCCCGTCGGTTACAAATGTGGAGC  360

Query  361  TTATACTCTGCCTTGAAGCAGCAGACAGAGAGCAATGGACGTGTTCGTCAAAACCAGTCT  420
            ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct  361  TTATACTCTGCCTTGAAGCAGCAGACAGAAAGCAATAGACGTGTTCTTCAAAACCAGTCT  420

Query  421  TAATTATCA  429
             |||| |||
Sbjct  421  AAATTGTCA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23559814943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5