BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487399
Length=2713
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05970.2 | Symbols: NEDD1 | Transducin/WD40 repeat-like supe... 4353 0.0
> AT5G05970.2 | Symbols: NEDD1 | Transducin/WD40 repeat-like superfamily
protein | chr5:1795294-1799527 FORWARD LENGTH=2733
Length=2733
Score = 4353 bits (2357), Expect = 0.0
Identities = 2605/2723 (96%), Gaps = 23/2723 (1%)
Strand=Plus/Plus
Query 1 AATCTCATAGGGTTCAAAATTTTGTTTCTGCTGTTCTCTCGAG-GAAAGGTAGAGTTCCC 59
|||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||
Sbjct 23 AATCTCATAGGGTTCAAAATTTGGTTTCTGCTGTTCTCTCGAGAAAAAAGTACAGTTCCC 82
Query 60 GCATTGTCCGGATTCTC-AGAGATTCATTCATTAATCTGAGTTTTCTCGGGAAAATTTAC 118
||||||| | ||||||| | |||||||||||| ||||||| ||||| |||||||||| ||
Sbjct 83 GCATTGTTCAGATTCTCTA-AGATTCATTCATCAATCTGACTTTTCCCGGGAAAATTCAC 141
Query 119 TGACTCTGAGT-CTAACCCGAATCCAGCGATGATGTCGAACTTGGTGGAGCCTTCGTGGC 177
|| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 142 TGTCTCTGAGTCCAAACCCGAATCCAGCGATGATGTCGAACTTGGTAGAGCCATCGTGGC 201
Query 178 GCCTTCTGGCAGCCAGCGGCGGAGATACGGTTAAGCTTTTCGACGTTTCTGCCGATTCCG 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GCCTTCTGGCAGCGAGCGGCGGAGATACGGTTAAGCTTTTCGACGTTTCTGCCGATTCCG 261
Query 238 GCGATCCCTGCGTTTTGAGCTATACTCCGACACCTGGTTGTGCTGTCAACTCCGTCAAGT 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 262 GCGATCCCTGCGTTTTGAGCTATACTCCGTCACCTGGTTGTGCTGTCAACTCCGTCAAGT 321
Query 298 GGAATCATACGAATTTAGTCGTGGCGAGTACGGGAGAAGATAAGAAGATATCCCTGTGGC 357
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 322 GGAATCATACGAATTTAGTGGTGGCCAGTACGGGAGAAGATAAGAAGATATCCCTGTGGC 381
Query 358 GGAAAAATGGGCAGAGTTTAGGAACAGTTCCAGTTACTGGCAAGGACGGTGGTGATAATG 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 382 GGAAAAATGGGCAGAGTTTAGGAACAGTTCCAGTTACTGGGAAGGACGGTGGTGATAGTG 441
Query 418 CTGAGGAATGTTTATCGGCTATTAGCTTCAGCAAAAAAGGGTCCAGGTACATTTGTTCTG 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 442 CTGAGGAATGTTTATCGGCTATTAGCTTCAGCAAAAAAGGCTCCAGGTACATTTGTTCTG 501
Query 478 GAGGAACTGGTCAAATTGTTAAGATATGGGATCTGCAAAGAAAGCTTTGTATTAAGAAGT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GAGGAACTGGTCAAATTGTTAAGATATGGGATCTGCAAAGAAAGCTTTGTATTAAGAAGT 561
Query 538 TGAAGGGTCATACAAGTACAATAACGGGTGTCATGTACAATTGCAAAGATGAGCATTTGG 597
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 562 TGAAAGGTCATACAAGTACAATAACGGGTGTGATGTACAATTGCAAAGATGAGCATTTGG 621
Query 598 CTTCTGTTAGTGTTGGTGGGGATCTGATAGTCCACAACCTTGCATCTGGAGCAAGGGCTA 657
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 622 CTTCTGTTAGTGTTGGTGGGGATCTAATAGTCCATAACCTTGCATCTGGAGCAAGGGCTA 681
Query 658 CAGAACTCAAAGATCCAAATGGGCAGGTATTAAGGTTGCTTGATTATTCAAGGTCCAGTC 717
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 682 CCGAACTCAAAGATCCAAATGGGCAGGTATTAAGGTTGCTTGATTATTCAAGGTCTAGTC 741
Query 718 GACACCTCCTACTCACTGCAGGTGATGATGGCACTGTGCATCTGTGGGACACAACTGGTC 777
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 742 GACACCTCCTAGTTACTGCAGGTGATGATGGCACTGTACATCTGTGGGACACAACTGGTC 801
Query 778 GTAGCCCCAAGATGTCCTGGTTGAAGCAGCATTCGGCACCAACTGCTGGCGTTTGCTTCT 837
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 802 GTAGCCCGAAGATGTCCTGGTTGAAGCAGCATTCGGCACCAACTGCTGGTGTTTGCTTCT 861
Query 838 CTCCATCAAACGAAAAGATAATTGCTAGTGTGGGGATGGACAAAAAGCTTTACACTTATG 897
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 862 CTCCATCAAACGAAAAGATAATTGCTAGTGTCGGGATGGACAAAAAGCTTTACACTTATG 921
Query 898 ATTCTGGATCCAGAAGATCTTCGTCCTGCATTGCCTATGAGGCACCTTTCTCCTCTTTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 ATTCTGGATCCAGAAGATCTTCGTCCTGCATTGCCTATGAGGCACCTTTCTCCTCTTTGG 981
Query 958 CGTTTGGGGATAATGGTTATATTCTGGCAGCTGGAACCAGTAATGGTAGAGTAGTGTTTT 1017
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 982 CGTTTGGGGATAATGGCTATATTCTGGTAGCTGGAACCAGTAACGGTAGAGTAGTGTTTT 1041
Query 1018 ACGACGTCCGTGGAAAACCGCAGCCTGTTACTGTCCTGCACGCTTTCAGTAATTCAGAGG 1077
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ACGACATCCGTGGAAAACCGCAGCCTGTTACTGTCCTGCACGCTTTCAGTAATTCAGAGG 1101
Query 1078 ATGTAACAAGTCTT-TCATGGCAAACATCAAAACCAGTTATTGTGAATGAGAAAAATTAC 1136
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 ATGTAACAAGT-TTATCATGGCAAACATCAAAACCAGTTATTGTGAATGAGAAAAATTAC 1160
Query 1137 ACTTCTGAGATGGCTCTTCTTGGCAGTACTGTGGAAGATTCAGTTGTCATTCCGGATCCA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1161 ACTTCTGAGATGGCTCTTCTTGGCAGTACTGTGGAAGATTCAGTTGTCATTCCAGATCCA 1220
Query 1197 CTTCCCTCAACGACACCCTCAGCTTCACAGTCCGCTTTGGCACCAGGTTCCCGTGGAGTT 1256
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1221 CTTCCCTCAACGACACCCTCAGCTTCACAGTCCGCTATGGCACCAGGTTCCCGTGGAGTA 1280
Query 1257 TCCGCGAGTACTGTAAATGCATCATCAGTTGAACAAACACCAAATAGAACTCATCTATGG 1316
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1281 TCCGCGAGTACTGTAAATGCATCATCAGTTGAACAAACACCAAATAGAAATCATCTATGG 1340
Query 1317 CCTGGTGGGCCACTGGGCAGACTGCATGCACTTCGTGCAAGTGACAGTTTTAATGATGAT 1376
||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1341 CCTAGTGGGCCACTGGGCAGACTGCATGCACTTCGTGCAAATGACAGTTATAATGATGAT 1400
Query 1377 ATGGGTGTTTTTTCACCTATTATTGACGTATCATCTGTTGAGAAGTGGGCTGATAGTGAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 ATGGGTGTTTTTTCACCTATTATTGACGTATCATCTGTTGAGAAGTGGGCTGATAGTGAA 1460
Query 1437 GGAT-TCAATAATAAGGACCATTTCGTTGTTGACAAAAAGCCGTCCTCTTTGCTATTTCC 1495
|||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1461 GGATAT-AATAATAAGGACCATTTAGTTGTTGACAACAAGCCGTCCTCTTTGCTATTTCC 1519
Query 1496 TTCATCCAGCAAGGGATATTCGTTCGGAGACGATGGAAACAAGGAACATCCGATATTCGA 1555
||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||
Sbjct 1520 GTCATCCAGCAAGGGATATTCGTTTGGAGACAATGGAAGCAAGGAACATCCAATATTCGA 1579
Query 1556 CTGGAAACCAAGTTCTACTTCGAAACAGGATGACACGAGGGTTGCTTTTTCGTCTTTTGG 1615
||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1580 TTGGAAACCAAGCTCTACTTCGAAACAGGATGACCCGAGGGCTGCTTTTTCGTCTTTTGG 1639
Query 1616 ATCTACTACGCCAACAGCATCATCCAAAAGTGAAGACACTGCCTTGACACCTCCAGAAGC 1675
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1640 ATCTATTACGCCAACAGCATCATCCAAAAGTGAAGACTCTGCCTTGACACCTCCAGAAGC 1699
Query 1676 ATGGGGTGGCGATAAATTTTCTGAGAAGTTTAACCAGTTGGCCAATGAGAAATTTTCTGA 1735
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1700 ATGGGGTGGTGATAAATTTTCTGAGAAGTTTAACCAATTGGCCAATGAGAAATTTTCTGA 1759
Query 1736 TAAATTTAGCCACCTGCATGCACCTTCACGTCTCGCGGTTTCAAGCACAGGTGCTAGTAC 1795
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1760 TAAATTTAGCCACCTGCATGCACCTTCACGTCTCGCTGTTTCAAGCACAGGTGCTAGTAC 1819
Query 1796 ATCTGGATCAATGTTCTCTAGCTCTCGAGATTTCCCCTTGTCGCTTGGTCAGACAAACCT 1855
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1820 ATCTGGATCAATGTTCTCTAGCTCTCGAGATTTCCCCTTGTCGCATGGTCAGACAAACTT 1879
Query 1856 CGCAAACGCTAGCTCAGAATTCCCACGGATCAGAGACTTCTCTTCAACCTTTGAGACATC 1915
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 CGCAAACGCTAGCTTAGAATTCCCACGGATCAGAGACTTCTCTTCAACCTTTGAGACATC 1939
Query 1916 CTCAACACAGACAGACAACAACTTGCCTTCAAGCCCATTGTTTACAAAAGGCATCACAGC 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 CTCAACACAGACAGACAACAACTTGCCTTCAAGCCCATTGTTTACAAAAGGCATCACAGC 1999
Query 1976 TCCGGGTAACATTGATTCATTGAGGCTATCACCAAATTTTACTCGTAGGTTCTCAACATA 2035
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 TCCTGGTAACATTGATTCGTTGAGGCTATCACCAAATTTTACTCGTAGGTTCTCAACATA 2059
Query 2036 TGCTGAGAGAATCAGCACCACTTCTTCCTTTAGTGACGGGGCCTCTCTCACTCTGGGTGG 2095
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2060 TGCTGAGAGAATCAGCACCACTTCTTCCTTTAGTGACGGGGCCTCTCTCAGTCTGGGTGG 2119
Query 2096 TTCACCCAAGATAAAGAAAACAGGCGCAGAAACGAGAGAGGAAGTTTTAAATCATCTGTT 2155
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2120 CTCACCCAAGATAAAGAAAACAGGCTCAGAAACGAGAGAGGAAGTTTTAAATCATCTGTT 2179
Query 2156 GCCGAGACCAGAGACGGTGGCTGCAACAGAAGCAGGAGCTATGCCGCTTATGAAT--GG- 2212
| | ||||||||||| || | |||||||||||||||||||||||||||||||||| ||
Sbjct 2180 GGCAAGACCAGAGACAGTAGTTGCAACAGAAGCAGGAGCTATGCCGCTTATGAATCAGGG 2239
Query 2213 AGGGTTGAAGCAACCTCAAACGGATCAACAGCA-GATGATGGGTAGTAGCAATTTCACGC 2271
||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2240 AGGGTTGAAGCAATCTCAAACGGATCAACAGCAAG-TGATGGGTAGTAGCAATTTCACGC 2298
Query 2272 TTCAGCTATTTCAAAGAACGCTCGAAGGAACTCTGGATTCTTTCCAAAACTCAATTCATG 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 TTCAGCTATTTCAAAGAACGCTCGAAGGAACTCTGGATTCTTTCCAAAACTCAATTCATG 2358
Query 2332 ATGACGTGAGGAACCTTCACGTTGAGATCCTCAGACAGTTCCACATGCACGAGATGGAGA 2391
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2359 ACGACGTAAGGAACCTTCACATTGAGATCCTCAGACAGTTCCACATGCACGAGATGGAGA 2418
Query 2392 TGTCGAAGGTGTTAAGCTCGATTCTGGAGAACCAAGCGGAGCAAATGAAGGAGTTAAAAT 2451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2419 TGTCGAAGGTGTTAAGCTCGATTCTGGAGAACCAAGCGGAGCAAATGAAGGAGTTAAAGT 2478
Query 2452 TGTTGCGAAAAGAGAATCAAGAGCTCAAAGAAAGGCTATAGAGGAGACCGTTGTGAGTTT 2511
||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||
Sbjct 2479 TGTTGCGAAAAGAGAATCAAGAGCTCAGACAAAGGCTTTAGGGGAGACCGTTGTGAGTTT 2538
Query 2512 TTGTGTGTTCAAATGTTGTGTGGATTTCTATCATTCTCTTTGGTACTCTTCATGTGTTCC 2571
|| |||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2539 TT-TGTGTTTAAATGATGTGTGGATTTATATCTTTCTCTTTGGTACTCTTCATGTGTTCC 2597
Query 2572 TCTCCGTTTTGCGATCGAATCCATTTTGATTTCATATTATGATTGATTCGTTTGGGTTTT 2631
||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 2598 TCTCCC-----CGATCGAATCCGTTTTGATTTCATATTATGATTGATCCGTTTGGGTTTT 2652
Query 2632 GGTAGAGATCTTGTTTACATT-GTAACATTGCATTTCCATTAATCTGGAGGAAGCAAACC 2690
|||||||||||||| || ||| | |||| ||| ||||| | ||||||||||||||||| |
Sbjct 2653 GGTAGAGATCTTGTATA-ATTTGAAACACTGCGTTTCC-T-AATCTGGAGGAAGCAAATC 2709
Query 2691 ATTAATCATGTCACAACGTTTGC 2713
||||| |||||||||||||||||
Sbjct 2710 ATTAACCATGTCACAACGTTTGC 2732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134748408898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5