BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487401
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05980.1 | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog B ... 3217 0.0
> AT5G05980.1 | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog
B | chr5:1799490-1804492 REVERSE LENGTH=2015
Length=2015
Score = 3217 bits (1742), Expect = 0.0
Identities = 1930/2020 (96%), Gaps = 16/2020 (1%)
Strand=Plus/Plus
Query 1 AAAAGACTAAACAAAAAGCAAAAGAAGTGTAGCAATGTTAGAGACCAGAGAATGTATGCA 60
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 1 AAAAGAGTAAACAAAAAGCAAAAGAAGTGTAGCAATGTTAGTGACAAGAGAATGTTTGCA 60
Query 61 GTTTCGATAGTACCTCGAACCACATCGTGCCGTTTGAGCTCTGCGTTTTTCTGCCACCTC 120
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |||
Sbjct 61 GTTTCGATAGTACCTCGAACCACATCGTGCCGTTTGAGCTCTGCCTTTCTCTGTCAACTC 120
Query 121 TCGATTCCTCTCACACTTGGGCTCCACCATCACTACCAACACCAGCAGCCTCACCTAACA 180
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TCGATTCCTCTCACTCTTCGGCTCCACCATCACTACCAACACCACCAGCCTCACCTACCA 180
Query 181 --T-CTCTCTCTTTTCAGATTCGTTCGTTAAGAAAGCAGATCGACATGGCAGCTCAAGGT 237
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCCTCTCTCTTTTCAGATTCATTCGTTAAGAAAGCAGATCGACATGGCAGCTCAAGGA 240
Query 238 GGTGATTCGTATGAGGAAGCGTTGGCTGCGTTGTCGTCTTTGATCACGAAACGAAGTCGT 297
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGTGATTCATATGAGGAAGCGTTGGCTGCTTTGTCGTCTTTGATCACGAAACGAAGTCGT 300
Query 298 GCTGATAAGAGCAACAAAGGGGATCG-TTTCGAGTTAGTCTTTGATTATCTCAAGCTGCT 356
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 301 GCTGATAAGAGCAATAAAGGGGATCGCTTT-GAGTTAGTCTTTGATTATCTCAAGCTACT 359
Query 357 TGACCTGGAAGAAGACATTTTAAAGATGAAAGTTATTCATGTCGCTGGAACCAAAGGCAA 416
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 360 TGACCTGGAAGAAGACATTTTAAAGATGAATGTTATTCATGTCGCTGGTACCAAAGGCAA 419
Query 417 GGGATCCACATGTACCTTTACAGAGTCTATTATTCGAAACTATGGCTTTCGAACTGGACT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGGATCCACATGTACCTTTACAGAGTCTATTATTCGAAACTATGGCTTTCGAACTGGACT 479
Query 477 CTTCACTTCACCTCACCTCATTGATGTCCGGGAAAGATTTCGCTTGGATGGTGTGGACAT 536
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 CTTCACTTCACCTCACCTCATTGATGTCCGGGAAAGATTTCGTTTGGATGGTGTGGACAT 539
Query 537 AAGTGAGGAGAAATTCTTGGGCTATTTCTGGTGGTGCTATAACAGGCTCAAGGAGAGAAC 596
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGTGAAGAGAAATTTTTGGGATATTTCTGGTGGTGCTATAACAGGCTCAAGGAGAGAAC 599
Query 597 AAACGAGGAGATACCAATGCCTACATATTTCCGCTTCCTTGCATTGCTAGCTTTTAAAAT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAACGAGGAGATACCAATGCCTACATATTTCCGCTTCCTTGCATTGCTAGCTTTTAAAAT 659
Query 657 ATTTGCTGCAGAAGAGGTAGATGCTGCTATATTGGAGGTAGGATTAGGTGGGAAGTTTGA 716
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 660 ATTTGCTGCAGAAGAGGTAGATGCTGCTATATTGGAGGTTGGATTAGGTGGAAAGTTTGA 719
Query 717 TGCCACCAATGCGGTTCAGAAACCTGTGGTATGTGGTATTTCTTCACTCGGATATGACCA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCCACCAATGCGGTTCAGAAACCTGTGGTATGTGGTATTTCTTCACTCGGATATGACCA 779
Query 777 CATGGAAATTCTAGGTGATACACTTGGAAAAATTGCTGGGGAGAAGGCTGGAATTTTCAA 836
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CATGGAAATTCTAGGTGATACACTTGGAAAAATTGCTGGTGAGAAGGCTGGAATTTTCAA 839
Query 837 GCTTGGAGTTCCAGCTTTCACAGTGCCCCAACCTGATGAAGCCATGCGTGTCCTTGAAGA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTTGGAGTTCCAGCTTTCACAGTGCCCCAACCTGATGAAGCCATGCGTGTCCTTGAAGA 899
Query 897 GAAAGCTTCCGAAACAGAAGTGAATCTCCAAGTGGTGCAACCACTAACCGCAAGGCTGTT 956
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 900 GAAAGCTTCCGAAACAGAAGTGAATCTCGAAGTGGTGCAGCCACTAACCGCAAGGCTGTT 959
Query 957 AAGTGGTCAGAAACTTGGGCTTGATGGGGAGCACCAATATCTCAATGCTGGTCTAGCAGT 1016
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 960 AAGTGGTCAGAAACTTGGGCTTGATGGGGAACACCAATATGTCAATGCTGGTCTAGCAGT 1019
Query 1017 TTCGCTTGCCTCTACCTGGCTTCAGCAAATTGGTAAACTTGAAGTTCCGAGTCGGACTCA 1076
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 TTCGCTTGCCTCTATCTGGCTTCAGCAAATTGGTAAACTAGAAGTTCCGAGTCGGACTCA 1079
Query 1077 GATGAGTATTTTGCCTGAGCAATTCATCAAAGGGTTAGCTACAGCGAGTTTGCAAGGACG 1136
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GATGAGTATTCTGCCTGAGAAATTCATCAAAGGGTTAGCTACAGCGAGTTTGCAAGGACG 1139
Query 1137 AGCACAGGTCGTCCCCGATCAATATACTGAATCTCGGACTTCGGGAGATCTAGTATTTTA 1196
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 AGCACAGGTCGTCCCTGATCAATATACTGAATCTCGGACTTCAGGAGATCTAGTATTTTA 1199
Query 1197 TCTGGATGGAGCTCACAGTCCAGAAAGCATGGAAGCATGCGCCAAATGGTTTTCGGTTGC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCTGGATGGAGCTCACAGTCCAGAAAGCATGGAAGCATGCGCCAAATGGTTTTCGGTTGC 1259
Query 1257 TGTTACGGGAGACAACCAGTCAGGGGGTTCAGGACATTTGGTTAATGGCTCCGCAGGATC 1316
|||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1260 GGTTAAGGGAGACAACCAGTCAGGGAGTTCAGGACATTTGGTTAATGGCTCTGCAGGATC 1319
Query 1317 CTCTCATGATAAATGGTCAAATGAAACCTGTCAACAGATATTGTTGTTCAATTGTATGTC 1376
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1320 CTCTCATGATAAATGGTCAAATGAAACCTGTGAACAGATATTGTTGTTCAATTGTATGTC 1379
Query 1377 AGTTCGGGACCCCAATCTGCTGCTTCCACATCTAAGGAATACGTGCGCAAAGTATGGTGT 1436
|||||||||||| ||||| |||||||||||||||| ||||| ||||||||| || |||||
Sbjct 1380 AGTTCGGGACCCAAATCTACTGCTTCCACATCTAAAGAATATGTGCGCAAAATACGGTGT 1439
Query 1437 CCATTTCAAGAAGGCATTGTTTGTTCCAAATATGTCGGTGTATCACAAGGTTAGTACAGC 1496
| |||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||||
Sbjct 1440 CAATTTCAAGAAGGCATTGTTTGTACCAAACATGTCGGTGTATCATAAGGTTGGTACAGC 1499
Query 1497 AGCTGATTTGCCAGAGAATGATCCACAGGTTGACTTGTCGTGGCAGTTCACACTCCAGAA 1556
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1500 AGCTGATTTGCCAGAGAATGATCCACAGGTTGACTTGTCATGGCAGTTCACACTTCAGAA 1559
Query 1557 AGTGTGGGAAAGCCTTGTCCAGAGTGAAAGAGAAGGaaaaaaaGATGGTGAAAGTAATGG 1616
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1560 AGTGTGGGAAAGCCTTGTGCAGAGTGAAAGAGATGGAGAAAAAGATGGTGAAAGTGATGG 1619
Query 1617 AAACAGTGAGGTGTTTACTTCACTACCCATGGCAATCAAATGGCTAAGGGATACTGTACA 1676
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1620 AAACAGTGAGGTGTTTACTTCACTACCCATGGCAATAAAATGTCTAAGGGACACTGTACA 1679
Query 1677 TGACAGTAGCTCAGCCACACGTTTCCAGGTCCTTGTAACTGGTTCGTTACATCTTGTGGG 1736
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGAGAGTAGCTCAGCCACACGTTTCCAGGTCCTTGTAACTGGTTCGTTACATCTTGTGGG 1739
Query 1737 CGATGTACTGAGATTAATCAGAAAATGAAGAGAAACAAACACAATTCACTTTTCAAATTT 1796
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1740 CGATGTACTGAGATTAATCAGAAAATGAAGAGAAACAAACACACTTCACTTTTCAAATTT 1799
Query 1797 CAATACACGAGAGTCGTCATCCACCAATCACCGTACCCACTGTGGAAGAGGATGGCCTTT 1856
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1800 CAATACACGAG--TCGTCATCCACCAATCACCGTACCCACTGTGGAAGAGGATGGCATTT 1857
Query 1857 CTTATTA-----T-TTT-GTATTATTTCGATTTAAGTTTCCAGGTTAAGTACTAACAAAG 1909
||||||| | ||| ||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 1858 CTTATTAAAAGCTATTTTGTATTATTTCGGTTTTAGTTTCCAGCTTAAGTACTAACAAAG 1917
Query 1910 TTGTGTTGTTCTTTTTCAAATTCAAGAGCAATAGTTAACAAACaaaaaaaaGGAAACATG 1969
||||| || ||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1918 TTGTGGTGATCTTTTTCAAATTCAAGAGCAATAGTTAACAAA-AAGAAAA-GGAAACATG 1975
Query 1970 TTCGCAAACGTTGTGACATGATTAATGATTTGCTTCCTCC 2009
|| ||||||||||||||||| |||||||||||||||||||
Sbjct 1976 TTGGCAAACGTTGTGACATGGTTAATGATTTGCTTCCTCC 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99547680735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5