BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487402
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05987.1 | Symbols: PRA1.A2 | prenylated RAB acceptor 1.A2 |... 1328 0.0
AT3G11397.1 | Symbols: PRA1.A3 | prenylated RAB acceptor 1.A3 |... 645 0.0
> AT5G05987.1 | Symbols: PRA1.A2 | prenylated RAB acceptor 1.A2
| chr5:1804804-1806850 FORWARD LENGTH=998
Length=998
Score = 1328 bits (719), Expect = 0.0
Identities = 869/937 (93%), Gaps = 28/937 (3%)
Strand=Plus/Plus
Query 1 TAATCAAACTCATCGGAGCT-TCTTGAATTCGTCGTCTTTGAAGAGG-A-AG-AGAG--G 54
|||||||||||||||||| | ||| ||| | ||||||||||||||| | || |||| |
Sbjct 9 TAATCAAACTCATCGGAG-TCTCTCGAA-T--TCGTCTTTGAAGAGGAAGAGAAGAGAAG 64
Query 55 AGGCGAGGGAGATATGGATTGGGACAACGTAGCTGCTGAGGATGTGATTGAGGCG-TTGA 113
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 65 AGGCGAGGGAGATATGGATTGGGACAACGTAGCAGCTGAGGATGTGATTGAGGCGCTT-A 123
Query 114 GAGAAGTCGAATGGTCGACGCCTCCTCGTTCGTTTGGCGAGTTCTTCTCTAGATTCGCAT 173
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 124 GAGAAGTTGAATGGTCGACGCCTCCTCGTTCGTTTGGCGAGTTCTTCTCTAGATTCGCGT 183
Query 174 TCCCTCGCTCTTTCTCTAAATGGAAGAGCCGCCTCAAATGCAATCTCTACTACTATAGGA 233
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 184 TCCCTCGCTCTTTCTCTAAATGGAAGAGCCGTCTCAAATGCAATCTCTACTACTATAGGA 243
Query 234 CGAATTACTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CGAATTACTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGG 303
Query 294 CTATTGTGGGTGCTGCTCTAACAGCCTTAAGTATAGCTTTCCTTAACGACAGTTTTGCGG 353
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 304 CTCTTGTGGGTGCTGCTCTAACAGCTTTAAGTATAGCTTTCCTTAACGACAGTTTTGCAG 363
Query 354 CTAGTTTTAATGAGAAGTTTATAAGGACGATTAGGCATTTCTCCCCACACTTGGCTGCAA 413
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 364 CTAGTTTTAATGAGAAGTTTATAAGAACGATTAGGCATTTCTCCCCACACATGGCTGCAA 423
Query 414 AAATGAGACCTCCCCACATGCCTGTCATCCGTGGAAGATCGGCAGCAAGAAAGACGGTAT 473
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 424 AAATGAGACCTCCCCACATGCCTGTCATCCGTGGAAGATCGACAGCAAGAAAGACAGTAT 483
Query 474 ACATATGTGGGAAACCACGATGGGTATTCGTTGTTACATTCCTTACAGCCAGTATTGTCA 533
|| | ||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 484 ACGTTTGTGGGAAACCGCGATGGGTATTCGTTATTACTTTCCTTACAGCCAGTCTTGTCA 543
Query 534 TTTGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTCCTTACTTCCCTTGCTG 593
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 544 TGTGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTTCTCACTTCCCTTGCTG 603
Query 594 TGATCATTGTTCATGCAAGCATGAGAACCCCAAATCTCAAGGCACGCTTGAACACATTCC 653
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 604 TGATCATTGTTCATGCAAGCATAAGAACCCCAAATCTCAAGGCACGCTTAAACACATTCC 663
Query 654 GTGAAGAATTTCGGGCCGTCTGGCGTAACTATAGTGAACTTTAAGTCACAGGTCGC--TA 711
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 664 GTGAAGAATTCCGGGCTGTCTGGCGTAACTACAGTGAACTTTAAGTCACAGGTCGCGCTA 723
Query 712 AACAATCTAGAAGCAAACAAAACAGCCATGTTGTCAACTGTCAAGTTAGGGGATGCTTTC 771
||||||||||| |||||||||||| ||| | | ||| || | |||||||||||||
Sbjct 724 CACAATCTAGAAACAAACAAAACAGTCATCT-GACAA--GT---G--AGGGGATGCTTTC 775
Query 772 CATCAACCATGTTCGCAGTTTATTCTTATGATGATGGCTGATGCA-CTCCAGTT--ACAT 828
| ||||||||||||||||||||||||||||||| | | |||| | ||| | || ||||
Sbjct 776 CCTCAACCATGTTCGCAGTTTATTCTTATGATG--G-CAGATGTAGCTCTATTTTTACAT 832
Query 829 GGTTAATATAGTTATTGGCAGTTCGATTGCAGACAGAATAGATTCACTTAAAATAGTGGA 888
|||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 833 GGTTAAGATGGTTATTGGCAGTTCGATAGCAGACAGAATAGATTCACTTGAAATAGTGGA 892
Query 889 CATACTTGACCAAGTTACTTCTAATTGGTGTAGTGAT 925
|||||||||||||||||||||||||||||||||||||
Sbjct 893 CATACTTGACCAAGTTACTTCTAATTGGTGTAGTGAT 929
> AT3G11397.1 | Symbols: PRA1.A3 | prenylated RAB acceptor 1.A3
| chr3:3576017-3578082 FORWARD LENGTH=1103
Length=1103
Score = 645 bits (349), Expect = 0.0
Identities = 550/645 (85%), Gaps = 21/645 (3%)
Strand=Plus/Plus
Query 68 ATGGATTGGGACAACGTAGCTGCTGAGGATGTGATTGAGGCGTTGAGAGAAGTCGAATGG 127
||||||||||||| ||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 157 ATGGATTGGGACAGCGTTGCTGCTGAGGATGTGATTGAGGCGTTAAGAGAGGTTGAATGG 216
Query 128 TCGACGCCTCCTCGTTCGTTTGG-CGAGTTCTTCTCTAGATTCGCATTCCCTCGCTCTTT 186
||| || ||||||||| |||| |||||||||||| |||||||| || |||||||||||
Sbjct 217 TCGGCGAGTCCTCGTTC-CTTGGCCGAGTTCTTCTCCAGATTCGCGTTTCCTCGCTCTTT 275
Query 187 CTCTAAATGGAAGAGCCGCCTCAAATGCAATCTCTACTACTATAGGACGAATTACTTTAT 246
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 276 CTCTAAATGGATGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCAT 335
Query 247 CTTGGT-GATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGGCTATTGTGGGTG 305
| | | | ||||||||||||||||||| ||| | || |||||||||| ||| | ||||
Sbjct 336 CCTCTTCG-TTTTCGTTCTGGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTG 394
Query 306 CTGCTCTAACAGCCTTAAG-TATAGCTTTCCTTAACGACAGTTTTGCGGCTAGTTTTAAT 364
||||||| ||||| ||||| | |||||||||| |||||||||||||| |||| |||||||
Sbjct 395 CTGCTCTTACAGCTTTAAGCT-TAGCTTTCCTAAACGACAGTTTTGCAGCTACTTTTAAT 453
Query 365 GAGAAGTTTATAAGGACGATTAGGCATTTCTCCCCACACTTGGCTGCAAAAATGAGACCT 424
|||||| | || |||| |||||||||||||| ||||| || |||||||| ||||| |||
Sbjct 454 GAGAAGATGATCCGGACCATTAGGCATTTCTCGCCACATTTAGCTGCAAAGATGAGGCCT 513
Query 425 CCCCACATGCCTGTCATCCGTGGAAGATCGGCAGCAAGAAAGACGGTATACATATGTGGG 484
||||||||||||||||| ||||| |||| ||| | |||||||| || ||||| |||||
Sbjct 514 CCCCACATGCCTGTCATTCGTGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGC 573
Query 485 AAACCACGATGGGTATTCGTTGTTACATTC-CTTA-CAGCCAGTATTGTCATTTGGTTTT 542
||||||| | ||||||||| |||| || |||| | |||||| ||||| | ||||||
Sbjct 574 CAACCACGTTTGGTATTCGTC-TTAC-TTGGCTTAACCGCCAGTTTTGTCCTGTGGTTTA 631
Query 543 CTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACT--CCTTACTTCCCTTGCTG-TGAT-C 598
|||| || |||||||| ||||||||||||||||| || ||| ||||| || |||| |
Sbjct 632 CTTCATGTGGTTTGTTATGGGTCCTCTATGCACTTACC--ACTGCCCTT-CTCATGATAC 688
Query 599 ATTGTTCATGCAAGCATGAGAACCCCAAATCTCAAGGCACGCTTGAACACATTCCGTGAA 658
|| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 689 -TTCTTCATGCAAGCCTGAGAACTCCAAACCTCAAGGCCCGCTTGAACACATTCCGTGAA 747
Query 659 GAATTTC-GGGCCGTCTGGCGTAACTATAGTGAACTTTAA-GTCA 701
||||| | |||| |||||||||||||| || ||||||||| ||||
Sbjct 748 GAATT-CAGGGCTGTCTGGCGTAACTACAGCGAACTTTAAAGTCA 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47521503062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5