BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487404
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translatio... 1288 0.0
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translatio... 128 9e-29
> AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808150-1809853 FORWARD LENGTH=1057
Length=1057
Score = 1288 bits (697), Expect = 0.0
Identities = 819/877 (93%), Gaps = 11/877 (1%)
Strand=Plus/Plus
Query 1 AAAAATGGCGATTGATTCGATGCAAAAAACAAACAAGCTTCGATGGGGAGAAATTGACGA 60
|||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 16 AAAAATGGCGATTGATACGATACAAAAAACAAAAAAGCTTCGGTGGGGAGAAATTGACGA 75
Query 61 AGAAGAAGACGACTTTGATTTCCTTCTTCCGCCTAAGCAAATGATTGGTCCGGACCAGAA 120
|||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 76 AGAAGAAGGCGACTATGATTTCCTTCTTCCGCCTAAGCAGATGATTAGTCCGGACCAGAA 135
Query 121 CGGTGTAAAGAAAGTGATTGTGTACAAGTTCAACGACGAGGGCAAAAAGGTCAAAATCAC 180
|||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||
Sbjct 136 CGGTGTAAAGAAGGTGATTGAGTACAAATTCAACGAAGAGGACAAAAAGGTCAAAATCAC 195
Query 181 TACCACGACTCGTGTTCAGAAGCGAGCTCTGACCAAACAAGCCGTGGAGCGACGGAGCTG 240
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 196 TACCACGACCCGTGTTCAGAAGCGAGCTCTCACCAAACAAGCCGTGGAGCGACGGAGCTG 255
Query 241 GAATAAGTTCGGAGACGCAGC-CAATGAGGAAGCCGGTAGCTACCTCACAATGCGTTCAA 299
||||||||||||||||||||| | |||| ||| || |||| |||||||||||||||||||
Sbjct 256 GAATAAGTTCGGAGACGCAGCTC-ATGAAGAATCCAGTAGTTACCTCACAATGCGTTCAA 314
Query 300 CAGAGGATATCATCTTGGATCGAATTAGAGCTCCTGGTAGCAACGTGGAACAGTCCA-CG 358
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||
Sbjct 315 CAGAGGATATCATCTTGGAACGAATTAGAGCTCCTGGTAGCAACGCGGAACAGTCGACCG 374
Query 359 ATATCAGGAGATAGCATGTCTCACCTGGGAAAACCGGGTGCGGTCCTCATGGTCTGCAGG 418
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 375 -TATCAGGAGATAGCATGTCTCAGTTGGGCAAACCGGGTGCGGTCCTCATGGTCTGCAGG 433
Query 419 TTATGCCACAAGAAAGGTGACCACTGGACATCAAGATGCCCACAGAAGGATCTCTTATCC 478
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTATGCCAAAAGAAAGGTGACCACTGGACATCAAGATGCCCACAGAAGGATCTCTTATCC 493
Query 479 TTAATGGACGAGCCTTTAACAGCAGAAACTTCTACATCGAGCATAGCTGGAACTGGAACT 538
|||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 494 TTAATGGACGAGCCTTTAACAGCAGAAACTTCTACATCGACCATA-----A-CTGGAACT 547
Query 539 GGCAAGGCTGCTTATGTCCCGCCAAGTATGAGAGAAGGTGCAGACAGAAAAGCTGGTGGT 598
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 548 GGCAGGGCGGCTTATGTCCCGCCAAGCATGAGAGAAGGTGCAGACAGAAAAGCTGGTGGT 607
Query 599 TCAGACATGAGGAGTAGAAATGAAGGGAACTCTGTCCGTGTGACTAACTTGTCTGAAGAT 658
|||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||
Sbjct 608 TCAGACATGAGGAGTAGACATGATGAGAACTCTGTCCGTGTGACTAATTTGTCTGAAGAT 667
Query 659 ACCCGTGGACCGGATTTGATGGAGTTGTTTCGTCCGTTTGGTTCTGTAAACCGTTGTCAT 718
||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 668 ACCCGTGGACCAGATTTGATGGAGTTGTTTCGTCCGTTTGGTGCTGTAACCCGTTGTCAT 727
Query 719 GTAGCCATACACCAGAAGGCGAGCATGAGCAGAGGATTTGGTTTTGTCAGTTTTGTCAGG 778
|||||||| | |||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 728 GTAGCCATTGATCAGAAGACAAGCATGAGCAGAGGATTTGGTTTTGTCAGTTTTGTGAGC 787
Query 779 AGGGAAGATGCACAGCGAGCAATCAACACATTGAATGGCTATGGCTATGATAACCTCATT 838
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 788 AGGGAAGATGCACAGCGAGCAATCAACAAATTGAATGGCTATGGTTATGATAACCTCATT 847
Query 839 CTTAGGGTTGAATGGGCCACTCCTAAA-CCCAATTAG 874
||||||||||||||| ||||||||||| |||||||||
Sbjct 848 CTTAGGGTTGAATGGTCCACTCCTAAAACCCAATTAG 884
> AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578388-3580569 FORWARD LENGTH=1317
Length=1317
Score = 128 bits (69), Expect = 9e-29
Identities = 233/308 (76%), Gaps = 27/308 (9%)
Strand=Plus/Plus
Query 5 ATGGCGATTGATTCG-ATGCAAAAAACAAACAAGCTTC-GATGGGGAGAAATTGACGAAG 62
||| |||| |||||| | ||||||||| | ||| ||| ||||||| ||||| |||||||
Sbjct 149 ATGACGATCGATTCGCA-GCAAAAAACGAGCAA-ATTCAGATGGGGGGAAATGGACGAAG 206
Query 63 AAGAAGACGACTTTGATTTCCTT-CTTCCGCCTAAGCAAATGATTGGTCCGGACCAGAAC 121
| ||||| | | ||||| ||| || || || ||||| |||||||||| || ||||
Sbjct 207 ACGAAGA--TC-TGGATTT-CTTGCTCCCTCCCAAGCAGGTGATTGGTCCAGATGAGAAT 262
Query 122 GGTGTAAAGAAAG-TGATTGTGTACAAGTTCAACGACGAGGGCAAA-AAGGTCAAAATCA 179
||| | ||| | | ||| | |||||| |||||||| || | ||| ||||| || || |
Sbjct 263 GGTTTGAAG-ACGACGATCGAGTACAAATTCAACGATGA-AGAAAATAAGGTTAAGATAA 320
Query 180 CTACCACGACTCGTGTTCAG-AAGCGAG---CT-CT-GA--C--CAAACAAGCCGTGGAG 229
| || | ||| |||| || | |||| || || || || | ||||| |||| |||||
Sbjct 321 CGACTAGGACACGTG-TCCGCAAGCTAGCTTCTGCTCGACTCAACAAACGAGCCATGGAG 379
Query 230 -CGACGGAGCTGGAATAAGTTCGGAGACGCAGCCAATGAGGAAGCCGGTAGCTACCTCAC 288
|| ||| |||| |||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 380 AGGA-GGAACTGGCCTAAGTTCGGAGACGCAGCCAATGAGGAAGCTGGTAGCCATCTCAC 438
Query 289 AATGCGTT 296
||| |||
Sbjct 439 TATG-GTT 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5