BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487408 Length=934 Score E Sequences producing significant alignments: (Bits) Value AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers su... 1411 0.0 > AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers superfamily protein | chr5:1828150-1829186 REVERSE LENGTH=1037 Length=1037 Score = 1411 bits (764), Expect = 0.0 Identities = 891/950 (94%), Gaps = 18/950 (2%) Strand=Plus/Plus Query 1 AAATCTTACATATGATGGAGAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGG 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 70 AAATCTTACATATGATGGATAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGG 129 Query 61 TTACGAGGCCATCTTCGGATGGGACATTGTTTTGGCCGTTTAGGGAAGAGAGAGCGTTTG 120 | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 130 TGACGAGGCCATCTTCGGATGGGACTTTATTTTGGCCGTTTAGGGAAGAGAGAGCGTTTG 189 Query 121 CGTCAGCTGAGGAGTATGGCGGTGGAGGCGCTTGCATGTGGCCGCCGAGGTCTTACTCGT 180 |||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||| | Sbjct 190 CGTCAGCTGAGGAGTATGGCGGCGGAGGTGGTTGCATGTGGCCACCGAGGTCTTACTCAT 249 Query 181 GCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 GCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTC 309 Query 241 ATCGAAGAGACCGAGCTAGACTCAAACAGCAATCATTATCACCTTCATCAACTGACCAAG 300 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 310 ATCGAAGAGACCGAGCTCGACTCAAACAACAATCATTATCACCTTCATCAACTGACCAAG 369 Query 301 CCACACATCCTGAATATGATCGTCAACAACAAGTTCTTGATGTGGGGTCAAAGGTTCTCG 360 |||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| | Sbjct 370 CCACACCTCCTGAATGTGATCGTCAACAACAAGTTCTTGATGTGGGATCAAAGGTTCTTG 429 Query 361 TCCAAGAAGAAACAAGAAAGCCTAATGGAACTAAAAGGGAGATAAGTGATGTTTGTAATA 420 | ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| Sbjct 430 TTCAAGAAGAAACAAGAAAGCCTAACGGAACCAAGAGGGAGATAAGTGATGTTTGTAATA 489 Query 421 ATAATGTTTTAGAAAGTTCTATGCAACGATATGAGCATGACAATGATGAAGTCAAGACTG 480 | || |||||||||||||||||| || ||||||| |||||||||| |||||||||||||| Sbjct 490 ACAACGTTTTAGAAAGTTCTATGAAAAGATATGAACATGACAATGGTGAAGTCAAGACTG 549 Query 481 ACTTGTCAGTCGGTCTACTAAGTTCTGAGTTTGATCCTCGGAAGAAACAACTAATCAAAG 540 |||| || ||||||||||| ||| |||||||||||||||||||||| ||||||||||| | Sbjct 550 ACTTATCGGTCGGTCTACTGAGTACTGAGTTTGATCCTCGGAAGAAGCAACTAATCAACG 609 Query 541 GATCATCTTCATCATGGAAGAGGGCAAAGACGGATGTGGCAAGATTTCCGATGATGTTAG 600 |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 610 GATCATCTTCGTCATGGAAGAGGGCAAAGACGGATGTGTCAAGATTTCCAATGATGTTAG 669 Query 601 GGTTGGTCATTGGAGTTTCCAAGATCAACGGTCATCATGAGGAGTTGGATCTTGAGCTAA 660 |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 670 GGTTGGTCATTGGAATTTCCGAGATCAACGGCCATCATGAGGAGTTGGATCTTGAGCTAA 729 Query 661 GGCTAGGAGCTGATCCGCCTAAGGTTAACTAGCTTAAGTAATTAAAAAAGTAATAATAGT 720 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 730 GGCTAGGAGCTGATCCGCCTAAGGTTAACTAGCTTAAGTAATTAAAAA-GTAATAATAGT 788 Query 721 TAATGTGATTGCCAAAAAGAAGAAGTTAAACTGTCTCTAATCTCAAGAGTGAAACGAGAG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 789 TAATGTGATTGCCAAAAAGAAGAAGTTAAACTGTCTCTAATCTCAAGAGTGAAAAGTGAG 848 Query 781 TAGGTTCTGTAGTGTTGGCTTTGATATAGTAATATTTTTATCTTATGGAAAAAGTCAACA 840 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 849 TAGGTTCTGTAGTGTTGGCTTTGATATAGTAATATATTTATCTTATGGATAAAGTCAACA 908 Query 841 CGTATAGTCTTTGCTCTAATTCATAAGACAATCTAAA-TATTTT--TT------------ 885 |||||||||||||||||||||||||||||||| |||| |||||| || Sbjct 909 CGTATAGTCTTTGCTCTAATTCATAAGACAAT-TAAAATATTTTGATTGTTTCTTTTTCT 967 Query 886 -ACGAATGATGTAACTTTCTCACGATTTGGTTTTCAATATTTATGCCTAT 934 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 968 TACGAATGATGTAACTTTCTCACGATTTGGTTTTCAATATTTATGCCTAT 1017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45662839623 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5