BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487408
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers su... 1411 0.0
> AT5G06070.1 | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers
superfamily protein | chr5:1828150-1829186 REVERSE LENGTH=1037
Length=1037
Score = 1411 bits (764), Expect = 0.0
Identities = 891/950 (94%), Gaps = 18/950 (2%)
Strand=Plus/Plus
Query 1 AAATCTTACATATGATGGAGAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGG 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 70 AAATCTTACATATGATGGATAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGG 129
Query 61 TTACGAGGCCATCTTCGGATGGGACATTGTTTTGGCCGTTTAGGGAAGAGAGAGCGTTTG 120
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 130 TGACGAGGCCATCTTCGGATGGGACTTTATTTTGGCCGTTTAGGGAAGAGAGAGCGTTTG 189
Query 121 CGTCAGCTGAGGAGTATGGCGGTGGAGGCGCTTGCATGTGGCCGCCGAGGTCTTACTCGT 180
|||||||||||||||||||||| ||||| | |||||||||||| |||||||||||||| |
Sbjct 190 CGTCAGCTGAGGAGTATGGCGGCGGAGGTGGTTGCATGTGGCCACCGAGGTCTTACTCAT 249
Query 181 GCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTC 309
Query 241 ATCGAAGAGACCGAGCTAGACTCAAACAGCAATCATTATCACCTTCATCAACTGACCAAG 300
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 ATCGAAGAGACCGAGCTCGACTCAAACAACAATCATTATCACCTTCATCAACTGACCAAG 369
Query 301 CCACACATCCTGAATATGATCGTCAACAACAAGTTCTTGATGTGGGGTCAAAGGTTCTCG 360
|||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 370 CCACACCTCCTGAATGTGATCGTCAACAACAAGTTCTTGATGTGGGATCAAAGGTTCTTG 429
Query 361 TCCAAGAAGAAACAAGAAAGCCTAATGGAACTAAAAGGGAGATAAGTGATGTTTGTAATA 420
| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 430 TTCAAGAAGAAACAAGAAAGCCTAACGGAACCAAGAGGGAGATAAGTGATGTTTGTAATA 489
Query 421 ATAATGTTTTAGAAAGTTCTATGCAACGATATGAGCATGACAATGATGAAGTCAAGACTG 480
| || |||||||||||||||||| || ||||||| |||||||||| ||||||||||||||
Sbjct 490 ACAACGTTTTAGAAAGTTCTATGAAAAGATATGAACATGACAATGGTGAAGTCAAGACTG 549
Query 481 ACTTGTCAGTCGGTCTACTAAGTTCTGAGTTTGATCCTCGGAAGAAACAACTAATCAAAG 540
|||| || ||||||||||| ||| |||||||||||||||||||||| ||||||||||| |
Sbjct 550 ACTTATCGGTCGGTCTACTGAGTACTGAGTTTGATCCTCGGAAGAAGCAACTAATCAACG 609
Query 541 GATCATCTTCATCATGGAAGAGGGCAAAGACGGATGTGGCAAGATTTCCGATGATGTTAG 600
|||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 610 GATCATCTTCGTCATGGAAGAGGGCAAAGACGGATGTGTCAAGATTTCCAATGATGTTAG 669
Query 601 GGTTGGTCATTGGAGTTTCCAAGATCAACGGTCATCATGAGGAGTTGGATCTTGAGCTAA 660
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 670 GGTTGGTCATTGGAATTTCCGAGATCAACGGCCATCATGAGGAGTTGGATCTTGAGCTAA 729
Query 661 GGCTAGGAGCTGATCCGCCTAAGGTTAACTAGCTTAAGTAATTAAAAAAGTAATAATAGT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 730 GGCTAGGAGCTGATCCGCCTAAGGTTAACTAGCTTAAGTAATTAAAAA-GTAATAATAGT 788
Query 721 TAATGTGATTGCCAAAAAGAAGAAGTTAAACTGTCTCTAATCTCAAGAGTGAAACGAGAG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 789 TAATGTGATTGCCAAAAAGAAGAAGTTAAACTGTCTCTAATCTCAAGAGTGAAAAGTGAG 848
Query 781 TAGGTTCTGTAGTGTTGGCTTTGATATAGTAATATTTTTATCTTATGGAAAAAGTCAACA 840
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 849 TAGGTTCTGTAGTGTTGGCTTTGATATAGTAATATATTTATCTTATGGATAAAGTCAACA 908
Query 841 CGTATAGTCTTTGCTCTAATTCATAAGACAATCTAAA-TATTTT--TT------------ 885
|||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 909 CGTATAGTCTTTGCTCTAATTCATAAGACAAT-TAAAATATTTTGATTGTTTCTTTTTCT 967
Query 886 -ACGAATGATGTAACTTTCTCACGATTTGGTTTTCAATATTTATGCCTAT 934
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TACGAATGATGTAACTTTCTCACGATTTGGTTTTCAATATTTATGCCTAT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5