BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487412
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06100.2 | Symbols: MYB33, ATMYB33 | myb domain protein 33 |... 2662 0.0
AT3G11440.1 | Symbols: ATMYB65, MYB65 | myb domain protein 65 |... 730 0.0
> AT5G06100.2 | Symbols: MYB33, ATMYB33 | myb domain protein 33
| chr5:1837914-1840727 FORWARD LENGTH=2127
Length=2127
Score = 2662 bits (1441), Expect = 0.0
Identities = 1681/1792 (94%), Gaps = 35/1792 (2%)
Strand=Plus/Plus
Query 33 TCCTTCCATTTCCACTCGATGTTCAGCTGCCCAAGCTAAGCTCGGATCTCAATCCAGCTT 92
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 55 TCCTTCCATTTCCACTCGATGTTCAGCTGCCCAAGCTAAGCTCGGATCTCTATCCAGCTT 114
Query 93 CGGTATTCAGCGTCTGACAgtttttggatttgttttttctttccttatttagggtttgtt 152
||||| ||||||||||||| || |||| || || ||| ||| ||
Sbjct 115 TGGTATCCAGCGTCTGACAG-TTCTGGA------------TT--TTGTTT----TTT-TT 154
Query 153 ttcctttttcgtctctttttATTGTGGGAGCTTGATGTCTAAATTGTTGCTCAAGT-ACT 211
|| | |||| || | |||| ||||||||||||||||||||||||| || || | |
Sbjct 155 TT-C--TTTC--CT-TATTTAGGGTGGGAGCTTGATGTCTAAATTGTTACT---GTCAGT 205
Query 212 GCTTTAATTAGAAAGGAGATGAGTTACACGAGCACTGACAGTGACCATAATGAGTCACCA 271
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GGTTTAATTAGAAAAGAGATGAGTTACACGAGCACTGACAGTGACCATAATGAGTCACCA 265
Query 272 GCTGCTGATGACAATGGAAGTGACTGCAGAAGTAGATGGGAAGGTCATGCTCTGAAGAAA 331
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 266 GCTGCTGATGATAATGGAAGTGACTGCAGAAGTAGATGGGATGGTCATGCTCTCAAGAAA 325
Query 332 GGGCCATGGAGTTCTGCTGAAGATGATATTCTTATTGACTATGTGAATAAGCATGGCGAA 391
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 326 GGCCCTTGGAGTTCAGCTGAAGATGATATTCTTATTGACTATGTGAATAAGCATGGTGAG 385
Query 392 GGTAACTGGAATGCTGTGCAGAGACATACGGGCTTGTTTCGTTGTGGTAAAAGCTGTCGT 451
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 386 GGTAACTGGAATGCTGTGCAGAAACACACCAGCTTGTTTCGTTGTGGTAAAAGCTGTCGT 445
Query 452 CTAAGGTGGGCTAATCATCTGAGGCCAAATTTGAAGAAAGGAGCTTTTAGCCAAGAAGAA 511
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 446 CTAAGATGGGCTAATCATCTGAGGCCAAATTTGAAGAAAGGAGCTTTTAGTCAAGAAGAA 505
Query 512 GAACAGCTTATTGTTGAATTGCATGCCAAGATGGGTAATAGATGGGCGCGTATGGCTGCG 571
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 GAACAGCTTATCGTTGAATTGCATGCCAAGATGGGTAATAGATGGGCACGTATGGCTGCA 565
Query 572 CATTTGCCTGGCCGAACGGATAACGAGATAAAGAATTATTGGAACACTCGTATCAAGAGG 631
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 566 CATTTGCCTGGCCGAACGGATAATGAGATAAAGAATTATTGGAACACTCGTATCAAGAGG 625
Query 632 CGACAACGAGCTGGTTTACCACTTTATCCTCCTGAAATGCATGTTGAAGCACTAGATTGG 691
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 626 CGACAACGAGCTGGTTTGCCACTTTATCCTCCTGAGATGCATGTTGAGGCACTTGAGTGG 685
Query 692 AGTCAAGAGTATGCCAAGAGTAGAGTTATGGGAGAAGATAGAATACATCAAGATTTCTTG 751
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 686 AGTCAAGAGTATGCCAAGAGTAGAGTTATGGGAGAAGATAGAAGACATCAAGATTTCTTG 745
Query 752 CAGCTGGGGAGTTGTGAATCTAATGTCTTCTTTGATAGTCTTAACTTTACAGACATGGTA 811
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 746 CAGCTGGGGAGTTGTGAATCTAATGTCTTCTTTGATACTCTTAATTTTACCGACATGGTA 805
Query 812 CCTGGTGCTTTTGACCTAGCAGATATGACTGCCTACAAAAATCTGGGTAA-TGGTGCAAG 870
|||||| ||||||| ||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 806 CCTGGTACTTTTGATCTAGCAGATATGACTGCCTACAAAAATATGGGTAACT-GTGCAAG 864
Query 871 TTCTCCTCGATATGAAAACTTCATGACACCAATAATGCCCTCCTCGAAGCGACTTTGGGA 930
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 865 TTCTCCTCGATATGAAAACTTCATGACACCAACAATCCCCTCCTCGAAGCGACTTTGGGA 924
Query 931 ATCTGAATTGTTGTATCCTGGGTGTAGCAGTACCGTAAAGCAAGAATTCTTGTCGCCTGA 990
|||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 925 ATCTGAGTTGTTGTATCCTGGGTGTAGCAGTACCATAAAGCAAGAATTCTCGTCGCCTGA 984
Query 991 ACAATTCCAGAACACATCTCCACAAAAGATTTCCAAAACTTGCAGTTTCTCAGTTCCTTG 1050
|||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 985 ACAATTCCGGAACACATCTCCACAAACGATTTCCAAAACTTGCAGCTTCTCAGTTCCTTG 1044
Query 1051 TGATGTTGAGCATCCTCTCTATGGAAACCGACATTCACCTGTTATGATTTCAGATAGCCA 1110
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1045 TGATGTTGAGCATCCTCTCTATGGAAACCGACATTCACCTGTTATGATTCCAGATAGCCA 1104
Query 1111 TACCCATACGGATGGCATTGTTCCTTCTTCTAAGCCCTCATATGGGGCAGTGAAGCTGGA 1170
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1105 TACCCCTACGGATGGCATTGTTCCTTATTCTAAGCCCTTATATGGGGCAGTGAAGCTGGA 1164
Query 1171 GCTCCCTTCATTCCAATATTCAGAAACAACATTTGACCAGTGGAAGAAATCGTCATCTCC 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GCTCCCTTCATTCCAATATTCAGAAACAACATTTGACCAGTGGAAGAAATCGTCATCTCC 1224
Query 1231 TCCACACTCTGATCTTCTTGATCCCTTTGATACTTACATTCAGTCTCCACCACCACCTAC 1290
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1225 TCCACACTCTGATCTCCTTGATCCCTTTGATACTTACATTCAGTCTCCACCACCACCAAC 1284
Query 1291 GGGGAGAGAAGAGTCAGATTTATATTCAAGTTTTGATACTGGTCTGCTCGATATGTTGCT 1350
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1285 GGGGGGAGAAGAGTCAGATTTATATTCAAATTTTGATACTGGTCTGCTCGATATGTTGCT 1344
Query 1351 TCTGGAGGCCAAGATCAGAAATAATACTACAAAGAACAATTTGTACAAGAGCTGCGCTTC 1410
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1345 TCTGGAAGCCAAGATCAGAAATAATAGTACAAAGAACAATTTGTACAGGAGCTGCGCTTC 1404
Query 1411 AACTATTCCATCAGCTGATCTTGGCAAGGTTACTGTGTCCCAAACTAAATCCGAGGAGTT 1470
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1405 AACTATTCCATCAGCTGATCTTGGCCAGGTTACTGTATCCCAAACTAAATCCGAGGAGTT 1464
Query 1471 TGACAATTCCCTTAAGAG-TT-T-GGTTCATTCCGAGATGTCCACACAAAATGCAGATGG 1527
|||||||||||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct 1465 TGACAATTCCCTTAAGAGCTTCTTGGTTCATTCCGAAATGTCCACACAAAATGCAGATGA 1524
Query 1528 AATTCCACCAAGGCAGAGAGaaaaaaaGCGGAAACCTCTCTTGGATATAACACGACCTGA 1587
|| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1525 AACTCCACCAAGGCAGAGAGAAAAAAAGCGGAAACCTCTCTTGGATATAACAAGGCCTGA 1584
Query 1588 CGTTTTGCTTGCATCGAGCTGGCTCGACCATGGTTTAGGGATTGTGAAAGAGACAGGTAG 1647
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1585 CGTTTTGCTTGCATCGAGCTGGCTTGACCATGGTTTAGGGATTGTGAAAGAGACAGGTAG 1644
Query 1648 CATGAGCGACGCACTTGCGGTTCTCCTCGGCGATGACATAGGAAATGACTATATGAATAT 1707
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1645 CATGAGCGACGCACTCGCGGTTCTCCTTGGCGATGACATAGGAAATGACTATATGAATAT 1704
Query 1708 GAGTGTTGGGGCATCCTCAGGAGTTGGGTCTTGTTCTTGGAGCAACATGCCTCCTGTCTG 1767
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1705 GAGTGTTGGGGCATCCTCAGGAGTTGGGTCTTGTTCTTGGAGCAACATGCCACCTGTCTG 1764
Query 1768 TCAAATGACGGAACTACCCTAACGAGCCCGGGAAATGGTTCACTCCATTGGT 1819
||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1765 TCAAATGACAGAACTACCCTAACGAGCCCGGGAAATCCTCCACTCCATTGGT 1816
> AT3G11440.1 | Symbols: ATMYB65, MYB65 | myb domain protein 65
| chr3:3602093-3605104 FORWARD LENGTH=2015
Length=2015
Score = 730 bits (395), Expect = 0.0
Identities = 920/1162 (79%), Gaps = 81/1162 (7%)
Strand=Plus/Plus
Query 256 CCATAATGAGTCACCAGCTGCTGATGA-CAAT-GGAAGTGACTGCAGAAGTAGATGGG-A 312
||||||||| ||||||||| ||||| | | | | || || ||||||||||||| ||| |
Sbjct 232 CCATAATGAATCACCAGCTCCTGAT-AGTATTAGCAA-TGGCTGCAGAAGTAGA-GGGAA 288
Query 313 AGGTCA-TGCT-CTGAAGAAAGGGCCATGGAGTTCTGCTGAAGATGATATTCTT-ATTGA 369
| | | || | ||||||||||| ||||||| ||| ||||||| | ||| || |||||
Sbjct 289 AAG-AAGTG-TCCTGAAGAAAGGACCATGGACTTCAACTGAAGACGGGATT-TTAATTGA 345
Query 370 CTATGTGAATAAGCATGGCGAAGGTAACTGGAATGCTGTGCAGAGACATACGGGCTTGTT 429
||||| || ||||| ||||| |||||||||||||||||||||| ||| || || ||
Sbjct 346 TTATGTAAAGAAGCACGGCGAGGGTAACTGGAATGCTGTGCAGAAACACACTAGCCTGGC 405
Query 430 TCGTTGTGGTAAAAGCTGTCGTCTAAGGTGGGCTAATCATCTGAGGCCAAATTTGAAGAA 489
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 406 CCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAA 465
Query 490 AGGAGCTTTTAGCCAAGAAGAAGAACAGCTTATTGTTGAATTGCATGCCAAGATGGGTAA 549
|||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||
Sbjct 466 AGGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAA 525
Query 550 TAGATGGGCGC-GTATGGCTGCGCATTTGCCTGGCCGAACGGATAACGAGATAAAGAATT 608
|| |||||| | | ||||||| ||||| ||||| ||||| ||||| |||||||||||||
Sbjct 526 TAAATGGGCACAG-ATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAAAGAATT 584
Query 609 ATTGGAACACTCGTATCAAGAGGCGACAACGAGCTGGTTTACCACTTTATCCTCCTGAAA 668
||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||
Sbjct 585 ATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGCTTACCACTTTACCCTCCTGAAA 644
Query 669 TGC-ATGTTGAAGCAC-TAGATTGGAGTC-AAGAGTATGCCAAGAGTAGAGT-T-ATG-G 722
| | ||||||| | || | ||||||| | |||||||| | ||||||| | | | || |
Sbjct 645 T-CTATGTTGATG-ACCTTCATTGGAG-CGAAGAGTATACAAAGAGTA-A-TATCATAAG 699
Query 723 -G-AGA-AGAT-A-GAATACATCAAGATTTCTTGCAGCTGGGGAGTTGTGAATCTAATGT 777
| ||| ||| | ||| ||||||||||||||||||| |||||| || | || ||||||
Sbjct 700 AGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCTAAAGATAATGT 759
Query 778 CTTCTTTGAT-AGTCTTAACTTTACAG--A-CATGGTACCTGGTGCTTTTGACCTAGCAG 833
||| ||||| | ||| || ||| | | | | || |||||| |||| ||||||| |||
Sbjct 760 CTTATTTGACGA-TCTAAATTTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAG 818
Query 834 ATATGACTGCCTACAAAAAT-CTGGGTAA-TGGTGCAAGTTCT-CCTCGATATGAAAACT 890
|| || ||| | ||| | | || || || ||| ||||||||| || || ||||| | ||
Sbjct 819 ATTTGGTTGCATGCAACA-TGCTAGG-AACTGGCGCAAGTTCTTCC-CGGTATGAGAGCT 875
Query 891 TCATGACACCAATAATGCCCTCCTCGAAGCGACTTTGGGAATCTGAAT-T-GTTGTATCC 948
|||| |||||||| |||| ||| | |||| | | |||||||||| || | | | | |||
Sbjct 876 ACATGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGATCTCGGT-T-TCC 933
Query 949 TGGGTGTAGCAGTACCGTAAAGCAAGAATTCTTGTCGCCTGAACAATTCCAGAACACATC 1008
||| ||||||| | ||||||| |||||| ||||| ||||| || ||||| || |
Sbjct 934 CATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACACTTTCAGAATACGGC 993
Query 1009 TCCACAAAAGATTTCCAAAACTTGCAGTTTCTCAGTTCCTTGTGATGTTGAGCATCCTCT 1068
| ||| |||| | ||| | |||||||| |||| | |||||||||||||| |||| ||
Sbjct 994 TGTACAGAAGAATCCCAGATCTTGCAGTATCTC-G--CCTTGTGATGTTGATCATCATC- 1049
Query 1069 CT-ATGGAAACCGACATTCACCTG-T-T-ATGAT--TTCA-GATAGCCATACCCATACGG 1121
|| ||| ||||| |||||| || | | ||||| ||| ||||||||||| ||||
Sbjct 1050 CTTATGAAAACCAACATTCGTCTCATATGATGATGGTTCCTGATAGCCATACAGTTACGT 1109
Query 1122 ATGGCATTGT-TCCTTCTTCTAAGCCCTCATATGGGGCAGTGAAGCTGGAGCTCCCTTCA 1180
||||||| | |||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1110 ATGGCAT-GCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCA 1168
Query 1181 TTCCAATATTCAGAAACAA---CATTTGACCAGTGGAAGAA-A-TC-GTCATCTCCTCCA 1234
||||||||||||||||| | ||||||| |||||||||| | || |||| | | ||||
Sbjct 1169 TTCCAATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCA-C-C-TCCA 1225
Query 1235 CACTCTGATCTTCTTGATCCCT-TTGATACTTACATTCAGTCTCCACCACCACCTACGGG 1293
||||| ||||| ||||| | || ||||| | || ||||| |||||||||||| | | ||
Sbjct 1226 CACTCAGATCTCCTTGA-CTCTGTTGATGCCTATATTCAATCTCCACCACCATCG-CAGG 1283
Query 1294 GAGAGAAGAGTCAGATTTATATTCAAGTTT-TG--ATACTGGTCTGCTCGATATGTTGCT 1350
|||| |||||||||| | ||| || || | || || || || |||||||| ||
Sbjct 1284 TAGAG--GAGTCAGATTG-T-TTCTC-TTCATGCGACACCGGCCTACTAGATATGTTACT 1338
Query 1351 TC-TGGAGGCCAAGATCAGAAA 1371
|| || |||||||||||| |||
Sbjct 1339 TCATG-AGGCCAAGATCA-AAA 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90009577185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5