BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487416
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06130.2 | Symbols: | chaperone protein dnaJ-related | chr5... 1712 0.0
> AT5G06130.2 | Symbols: | chaperone protein dnaJ-related | chr5:1853432-1855888
REVERSE LENGTH=1395
Length=1395
Score = 1712 bits (927), Expect = 0.0
Identities = 1041/1096 (95%), Gaps = 8/1096 (1%)
Strand=Plus/Plus
Query 27 AGAAGACGATTGACAACAAAAAGCGTTTGGCGAG-AGAAGATGACGTGCTTCTCTTGTGC 85
|||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 86 AGAAGACGATAGACAGCAAAAAGCGTTGGGCGAGAAGAAGATGACGTGCTTCTCTTCTGC 145
Query 86 AACTCCTCATCGCCATCATCTTCTTC-TTC--CTCCATCTACTTCCAAATCCCTGCTTCG 142
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 146 TACTCCTCATCGCCATCATCTTCTACTTTCTTCTCCATCTACTTCCAAATCCCTGCTTCG 205
Query 143 ATTTCACTCATCTTATCTTAAACCTAGCCCCAGTCTTCTCTTTCATGGCTCATCTCGCTC 202
||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 206 ATTTCCCTCATCTTATCTGAAACCTAGCCCCAGTCTTCTCTTCCATGGCTCATCTCGCTC 265
Query 203 TCTCCTCTCCTGTTCAGACGGCAGCAACAACGGTCCTCCTCCCTCCGGTGACACCGTCCC 262
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 266 TCTCCTCTCCTGTTCAGACGGCAGCAACAACCGTCCTCCTCCCTCCGGTGACACCGTCCC 325
Query 263 AAATAACTTCTGTATCATTGAGGGATCAGAGACAGTTCAGGATTTTGTGCAGATGCAGCT 322
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 326 AAATAACTTCTGTATCATTGAGGGATCAGAGACAGTTCAAGACTTTGTGCAGATGCAGCT 385
Query 323 TCAGGAAATCCAAGATAGCATAAGGAGTAGACGCAATAAGATCTTTCTCCTCATGGAGGA 382
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 386 TCAGGAAATCCAAGATAACATAAGGAGTAGACGCAATAAGATATTTCTCCTCATGGAGGA 445
Query 383 AGTCAGGAGGTTACGAGTTCAGCAACGTATTAAGAGTGTTAAAGCCATCAATGAGGACAG 442
||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 446 AGTGAGGAGGTTACGTGTGCAGCAACGTATCAAGAGTGTTAAAGCCATCAATGAGGACAG 505
Query 443 TGAGCTCGAGGCTACCGAGATGCCTGAGATCACATCTTCCATTCCTTTTCTCCCTAATGT 502
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 506 TGAGCTCGAGGCTACCGAGATGCCTGAGATCACATCTTCTATTCCTTTCCTCCCTAATGT 565
Query 503 GACACCAAAGACTTTGAAACAACTCTATTCGACCAGCGTTGCATTGATATCGGGAATAAT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 566 GACACCAAAGACTTTGAAACAACTCTATTCGACCAGCGTTGCATTGATATCGGGAATTAT 625
Query 563 CTTCTTTGGTGGTCTCATTGCACCTAATCTGGAGCTGAAGGTAGGACTTGGAGGAACCTC 622
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 626 CTTCTTTGGTGGTCTCATTGCACCTAATCTGGAACTGAAGGTAGGACTTGGAGGAACCTC 685
Query 623 TTATGAAGATTTTATAAGGAGCTTGCATCTACCCTTGCAATTAAGCCAGGTAGATCCAAT 682
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 686 TTATGAAGATTTTATAAGGAGCTTACATCTACCCTTGCAATTAAGCCAGGTAGATCCAAT 745
Query 683 CGTGGCATCTTTTTCTGGCGGGGCCGTGGGAGTCATTTCAACGTTGATGCTAATCGAAGT 742
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 746 TGTGGCATCTTTTTCTGGCGGGGCCGTGGGAGTCATTTCAACCTTGATGCTAATCGAAGT 805
Query 743 TAACAATGTTAAACAACAAGAGAAGAAGAGGTGCAAGTACTGCCTTGGGACTGGATACTT 802
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 806 TAACAATGTTAAACAACAAGAGAAGAAGAGGTGCAAATACTGCCTTGGGACTGGATACTT 865
Query 803 GCCATGTGCTCGATGTTCAGCTAGTGGTGTGTGCTTAAGCATTGATCCCATCACACGACC 862
|||||| |||||||| ||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 866 GCCATGCGCTCGATGCTCAGCTAGTGGTGTGTGTTTGAGCATTGATCCCATCACAAGACC 925
Query 863 TAGAGCTTCAAACCGGCTTATGCCGGTCGCGACAACAAAAAGGTGTTTAAACTGTTCCGG 922
||||||| |||||| |||||||| ||||||||| |||||||| ||| |||| ||||||||
Sbjct 926 TAGAGCTACAAACCAGCTTATGCAGGTCGCGACCACAAAAAGATGTCTAAATTGTTCCGG 985
Query 923 CGCAGGAAAGGTGATGTGTCCGACATGTCTTTGCACTGGGATGGTCACGGCTAGCGAGCA 982
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 986 CGCAGGAAAGGTGATGTGTCCGACATGTCTTTGCACCGGGATGGTAACAGCTAGCGAGCA 1045
Query 983 TGACCCGCGCTTTGACCCTTTTGATTAGAAAACAATGACCTTTCCTTTGAAATTGGTCCT 1042
|||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1046 TGACCCCCGCTTTGACCCTTTCGATTAGAAAACAATGGCCT--CCTTTGAAATTGGTCCT 1103
Query 1043 TGCAAAAGCTAAGCCAGGACTATGAATGAACTGAGGAGAGCCAAACCTCGTCATATAAAT 1102
|||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 1104 TGCAAAAGCTAAGCCAAGCCTATGA--GAACTGAGGAGAGCCAAACCTCGTCATATAAAT 1161
Query 1103 GCTTTACATAATAAAA 1118
| ||||||||||||||
Sbjct 1162 GTTTTACATAATAAAA 1177
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TTTTAGCCCAAAATGGTAACCTTCGTAG 28
||||||||||||||||||||||||||||
Sbjct 10 TTTTAGCCCAAAATGGTAACCTTCGTAG 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5