BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487418
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06150.1 | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein... 2495 0.0
AT1G34460.1 | Symbols: CYCB1;5, CYC3 | CYCLIN B1;5 | chr1:12595... 603 2e-171
> AT5G06150.1 | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein
| chr5:1859279-1861649 REVERSE LENGTH=1680
Length=1680
Score = 2495 bits (1351), Expect = 0.0
Identities = 1519/1600 (95%), Gaps = 11/1600 (1%)
Strand=Plus/Plus
Query 1 AATCTCAGAGGCTCTTTACGAAAGAGAAAAATCAAGACTAAGAAACAAGAAGAGTAAGAA 60
|||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3 AATCGCAGAGACTCTTTACGAAAGAGAAATATCAAGACTAAGAAACAAGAAGAGTAAGAA 62
Query 61 TCAGTAGGAGAGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTC 120
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TCATTGGGAGAGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTC 122
Query 121 CTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCGC 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 123 CTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAGTCGGCGTGCCC 182
Query 181 TCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAACCTCAACCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 183 TCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTC 242
Query 241 CGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCCAATGCCCAACTCG 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 243 CGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCGAATGCCCAACTCG 302
Query 301 AAAGAAAGCCAATCAATGGAGACAACAAGGTTCCGGCTCTTGGTCCAAAGAGACAACCTC 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 303 AAAGAAAGCCAATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGACAACCTC 362
Query 361 TTGCTACAAGAAACCCAGAAGCTCAAAAGGCGGTTCAGAAGA-GAAACCTAGTGGTTAAG 419
||||| ||||||||||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct 363 TTGCTGCAAGAAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATC-TAGTGGTTAAG 421
Query 420 CAACCGACCAAACCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAACTA 479
|||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 CAACAGACGAAGCCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAAGTA 481
Query 480 GCAATGTCACCTAAGGATAAGAAAGTGACGTACTCGTCTGTTCTTAGTGCTCGGAGCAAA 539
|| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 482 GCGATGTCACCTAAGAATAAGAAAGTGACGTACTCGTCTGTACTTAGTGCTCGGAGCAAA 541
Query 540 GCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGAATCTGACAAAGAT 599
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 542 GCTGCTTGTGGTATAGTCAACAAACCAAAGATTATCGATATTGATGAATCTGACAAAGAT 601
Query 600 AACCATCTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAG 659
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AACCATTTGGCTGCGGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAG 661
Query 660 AAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAATGAGAAGATGAGA 719
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 662 AAGGAGAGTCAGCCTAAGATGTACATGCACATTCAGACTGAAATGAATGAGAAGATGAGA 721
Query 720 GCGATTTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTTAACCTGGAAACT 779
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 722 GCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTCAACCTTGAAACT 781
Query 780 CTCTACCTCACTGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCCAAGAGA 839
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 782 CTGTACCTCACCGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCTAAAAGA 841
Query 840 GAGTTGCAGCTTGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATTTGG 899
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 842 GAGTTACAGCTAGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATCTGG 901
Query 900 CCACCTCAGGTTAACGATTTGGTGTATGTCACGGACAATGCTTACAACAGCAGACAGATA 959
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 902 CCACCTCAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATT 961
Query 960 CTAGTGATGGAGAAGACTATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAA 1019
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CTGGTGATGGAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAA 1021
Query 1020 TACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATTTCTGACCCTGAAATGGAGAATATG 1079
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1022 TACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATGTCTGATCCAGAAATGGAGAATATG 1081
Query 1080 GTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACGCCTTGATGTTCTGTCCCTCC 1139
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1082 GTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACACCTTGACGTTCTGTCCCTCC 1141
Query 1140 ATGCTTGCTGCTTCAGCTGTTTACACTGCAAGATGCTCATTGAACAAGTCCCCTGCTTGG 1199
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1142 ATGCTTGCTGCTTCAGCTGTTTACACGGCAAGATGCTCATTGAACAAGTCCCCTGCTTGG 1201
Query 1200 ACTGATACATTGCAGTTCCACACTGGCTACACAGAATCTGAGATTATGGACTGCTCGAAG 1259
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1202 ACTGATACATTGCAGTTCCACACCGGCTACACAGAGTCTGAGATTATGGACTGCTCAAAG 1261
Query 1260 CTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAG 1321
Query 1320 TACTCAAAGGCTGAGAATGGAGGTGTTGCTTTGGTTTCACCAGCCAAGTCCCTCTTGAGT 1379
||||| ||||| |||||||||||||||||| ||||||| || |||||||| |||||||||
Sbjct 1322 TACTCGAAGGCAGAGAATGGAGGTGTTGCTATGGTTTCTCCGGCCAAGTCTCTCTTGAGT 1381
Query 1380 GCTGCTGCTGATTGGAAGAAGCCCGTTTCTTCTTAGATGttttttttCATCAGATCTCTC 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1382 GCTGCTGCTGATTGGAAGAAGCCTGTTTCTTCTTAGATGTTTTTTTTCATCAGATCTCTC 1441
Query 1440 TCTGATTCAAAATTCTAGATTTGACATGTTAAAATACTCTTTTGTTTT---GAGTTCAAA 1496
|||||||||||||||||||||| ||| | | |||||||||||||| |||||||||
Sbjct 1442 TCTGATTCAAAATTCTAGATTTCTCATC--AGA-TACTCTTTTGTTTTTTTGAGTTCAAA 1498
Query 1497 CGTATTAATGAATTCTT---ATCAGTGTTTTTCTTAGTCTCTGATTACTTTGATTTTAGT 1553
||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1499 CGTATTAATGAATTCTTCTCATCAGTGTTTTTCTTAATCTCTGATTACTTGGATATTAGA 1558
Query 1554 TTTCTACTGTATCTTTAACAGATAGATGATGTTTGATTGT 1593
|||||||| ||||||||||||||||||||||||||| |||
Sbjct 1559 TTTCTACTATATCTTTAACAGATAGATGATGTTTGACTGT 1598
> AT1G34460.1 | Symbols: CYCB1;5, CYC3 | CYCLIN B1;5 | chr1:12595110-12599628
FORWARD LENGTH=1476
Length=1476
Score = 603 bits (326), Expect = 2e-171
Identities = 370/391 (95%), Gaps = 3/391 (1%)
Strand=Plus/Plus
Query 71 AGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTCCTCTCGTTGA 130
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 330 AGCGATCATGGCGACGAGGGCAAACATACCTGAACAAGTCAGAGGTGCTCCTCTCGTTGA 389
Query 131 TGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCGCTCGGTGACAT 190
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 390 TGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCCCTCGGTGACAT 449
Query 191 CGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAACCTCAACCTCCGATTAATCG 250
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 450 CGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTCCGATTAATCG 509
Query 251 ACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCCAATGCCCAACTCGAAAGAAAGCC 310
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 510 ACCCATTACTCTTAGTTTTCGTGCCCAGTTATTAGCGAATGCCCAACTCGAAAGAAAGCC 569
Query 311 AATCAATGGAGACAACAAGGTTCCGGCTCTTGGTCCAAAGAGACAACCTCTTGCTACAAG 370
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||
Sbjct 570 AATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGTCAGCCTCTTGCTGCAAG 629
Query 371 AAACCCAGAAGCTCAAAAGGCGGTTCAGAAGA-GAAACCTAGTGGTTAAGCAACCGACCA 429
||||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||| |
Sbjct 630 AAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATC-TAGTGGTTAAGCAACAGACGA 688
Query 430 AACCTGTTGAAGTGATCGAGACGAAGAAGGA 460
| ||||||||||||||||||||||||| |||
Sbjct 689 AGCCTGTTGAAGTGATCGAGACGAAGA-GGA 718
Score = 540 bits (292), Expect = 2e-152
Identities = 312/322 (97%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 527 TGCTCGGAGCAAAGCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGA 586
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCTCAAAGCAAAGCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGA 779
Query 587 ATCTGACAAAGATAACCATCTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTA 646
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATCTGACAAAGATAATCATGTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTA 839
Query 647 TAAAGAAGTTGAGAAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TAAAGAAGTTGAGAAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAA 899
Query 707 TGAGAAGATGAGAGCGATTTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCT 766
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGAGAAGATGAGAGCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCT 959
Query 767 TAACCTGGAAACTCTCTACCTCACTGTCAACATCATTGATCGATTCCTCTCTGTGAAAGC 826
|||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 960 TAACCTTGAAACTCTGTACCTCACTGTTAACATCATTGATCGATTCCTCTATGTGAAAGC 1019
Query 827 TGTCCCCAAGAGAGAGTTGCAG 848
||| ||||||||||||||||||
Sbjct 1020 TGTTCCCAAGAGAGAGTTGCAG 1041
Score = 228 bits (123), Expect = 2e-58
Identities = 149/162 (92%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 906 CAGGTTAACGATTTGGTGTATGTCACGGACAATGCTTACAACAGCAGACAGATACTAGTG 965
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1039 CAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATTCTAGTG 1098
Query 966 ATGGAGAAGACTATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAATACGTC 1025
||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1099 ATGAAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAATCCCGACTCAATACGTC 1158
Query 1026 TTCCTTGTCCGCTTCATCAAAGCTTCGATTTCTGACCCTGAA 1067
|||||| || ||||||||||||||||||| ||||| || |||
Sbjct 1159 TTCCTTTTCTGCTTCATCAAAGCTTCGATATCTGATCCAGAA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5