BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487419
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06160.1 | Symbols: ATO | splicing factor-related | chr5:186... 2680 0.0
AT2G14285.1 | Symbols: | Small nuclear ribonucleoprotein famil... 95.3 2e-18
> AT5G06160.1 | Symbols: ATO | splicing factor-related | chr5:1862369-1866433
REVERSE LENGTH=1904
Length=1904
Score = 2680 bits (1451), Expect = 0.0
Identities = 1604/1677 (96%), Gaps = 13/1677 (1%)
Strand=Plus/Plus
Query 1 GATTTTCCTTTTCTCTTGGATTGGCGTTAAAAATTTTGCCGGCGAGATTTCGGATTGAGG 60
|||| || |||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 GATTATCTTTTTCTCTCGGATTGGCGTTAAAAATTTTACTGGCGAGATTTCGGATTGAGG 60
Query 61 AAAAGAAAAGAGATTGGAA-TTAGGGTTTAGACTCCGGCGAAGAAGAAGATCTCAAAGCT 119
|||||||||| || ||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct 61 AAAAGAAAAGTGACTGGAATTTAGGGTTTAGACTCCGGCGAAGAAGGAGATTTCAAAGCT 120
Query 120 TCGAAGACAGAGAAGATGTCGTCGACTCTCCTCGAGCAAACTCGCTCCAATCATGAAGAG 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCGAAGACAGAGAAAATGTCGTCGACTCTCCTCGAGCAAACTCGCTCCAATCACGAAGAG 180
Query 180 GTTGAGAGATTGGAGCGATTGGTTGTGCAAGATCTACAGAAAGAGCCACCGTCCAGCAAG 239
||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 181 GTTGAAAGGTTGGAGCGATTGGTTGTGGAAGATCTACAGAAGGAGCCACCGTCCAGCAAG 240
Query 240 GACAGATTGGTCCAGGGTCATCGTGTTCGTCACATGATTGAGTCCATCATGCTCACCACT 299
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 241 GACAGATTGGTCCAGGGACATCGTGTTCGTCACATGATTGAGTCTATTATGCTCACCACT 300
Query 300 GAGAAACTTGTTGAAACCTATGAAGATAAGGATGGGGCGAGGGATGACGAGATTGCAGCG 359
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 301 GAGAAACTTGTTGAAACCTATGAAGATAAGGATGGGGCGTGGGATGATGAGATTGCAGCG 360
Query 360 CTTGGTGGCCAGACTGCGACAGGGACAAATGTGTATAGTGCATTTTATGATCGTTTGAAA 419
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||
Sbjct 361 CTTGGTGGCCAGACTGCGACAGGGACAAATGTGTTTAGTGAATTTTACGATCGTTTGAAA 420
Query 420 GAGATACGTGAATATCATAAAAGGCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGATACGTGAATATCATAAAAGGCATCCTTCTGGACGTCTTGTTGATGCTAATGAAGAC 480
Query 480 TACGAAGCACGCCTGAAGGAGGAACCAGTTATTGCGTTCAGTGGAGAGGAAGGCAATGGT 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TACGAAGCACGCCTGAAGGAGGAACCAATTATTGCGTTCAGTGGAGAGGAAGGCAATGGT 540
Query 540 CGGTACTTGGACTTGCATGATATGTATAACCAGTACATCAACTCTAAATTTGGGGAAAGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGGTACTTGGACTTGCATGATATGTATAACCAGTACATCAACTCTAAATTTGGGGAAAGG 600
Query 600 GTTGAATATTCTGCTTACCTTGATGTTTTTTCTCAACCAGAGAAAATCCCGCGTAAACTG 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GTTGAATATTCTGCTTACCTTGATGTTTTTTCTCAACCAGAGAAAATACCGCGTAAACTG 660
Query 660 AAGTTATCGAGGCAATACAGGAAGTATATGGAAGCTCTGCTAGAGTACTTGGTCTACTTT 719
||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||
Sbjct 661 AAGTTATCGAGGCAATACATGAAGTATATGGAAGCTCTACTTGAGTACCTGGTCTACTTC 720
Query 720 TTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTTCTAAGGTTTGGTCTGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 TTCCAGCGAACCGAGCCGTTGCAAGATCTTGACCGGATACTTTCTAAGGTTTGTTCTGAT 780
Query 780 TTTGAAGAGCAATATGCAGATGGAAAAGTAGAAGGCTGGGAGAATGGCCAGGACAATGAA 839
||||||||||||||||||||||| || | | | | |||| |||| ||| ||||||
Sbjct 781 TTTGAAGAGCAATATGCAGATGG--AA-T---A-G-T---AGAA-GGCCTGGATAATGAA 828
Query 840 CTTGTTTCATCTCAGCATACTGTCATAGATCTTGATTATTACAGTACAGTCGAGGAACTG 899
||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 829 CTTATTCCATCTCAGCATACTGTCATAGATCTTGATTACTACAGTACAGTCGAGGAACTG 888
Query 900 GTAGATATAGGACCTGAAAAGCTTAAGGAGGCATTGGGAGCATTAGGACTGAAGGTTGGT 959
|||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 889 GTAGATGTAGGACCTGAAAAGCTAAAAGAGGCATTGGGGGCATTAGGACTGAAGGTTGGT 948
Query 960 GGTACTCCGCAGCAGCGTGCCGAGAGACTTTTCCTGACAAAGCATACGCCTTTGGAAAAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GGTACTCCGCAGCAGCGTGCCGAGAGACTTTTCCTGACAAAGCATACGCCTTTGGAAAAG 1008
Query 1020 CTGGATAAGAAACATTTTGCCAAAGCTCCACACAACGGGAAACAAAACGGAGATGCCAAA 1079
|||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 1009 CTGGATAAGAAACATTTTGCCAGACCTCCACACAACGGAAAACAAAACGGAGATGCCAAA 1068
Query 1080 TCAACACATGAGTCTGAAAATGCTAAAGAGATTGCACTAATAGAGGCGAAAGTGAAGAAA 1139
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1069 TCAACACATGAGTCTGAAAATGCTAAAGAGATTGCACTAACAGAGGCCAAAGTGAAGAAA 1128
Query 1140 CTCTGCAATTTACTTGATGAGACCATTGAAAGGACAAAACAAAACGTTGTAAAGAAACAG 1199
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1129 CTCTGCAATTTACTTGATGAGACCATCGAAAGGACAAAACAAAACATTGTAAAGAAACAG 1188
Query 1200 TCGTTGACATATGAAGAAATGGAGGGAGAACGTGAAGGGGAGGAAGCTAATGCCGAATCA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1189 TCGTTGACATATGAAGAAATGGAGGGAGAACGTGAAGGGGAGGAAGCTAATACCGAATTA 1248
Query 1260 GAAAGTGATGACGAGGACGGTGAGATTTACAATCCGCTGAAGCTGCCAATAGGTTGGGAT 1319
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1249 GAAAGTGATGACGAGGACGGTTTGATTTACAATCCGCTGAAGCTACCAATAGGTTGGGAT 1308
Query 1320 GGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGGAGTTTAAATGC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GGGAAGCCTATACCATACTGGCTCTACAAACTTCATGGCCTTGGCCAGGAGTTTAAATGC 1368
Query 1380 GAGATATGTGGGAACTATAGCTATTGGGGAAGAAGGGCGTTTGAGAGACATTTTAAAGAA 1439
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1369 GAGATATGTGGGAACTATAGCTATTGGGGAAGAAGGGCTTTTGAGAGACATTTTAAAGAA 1428
Query 1440 TGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAATGAA 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1429 TGGCGACACCAACACGGAATGCGTTGCCTAGGAATCCCAAACACAAAGAACTTCAACGAA 1488
Query 1500 ATCACTTCGATTGAGGAAGCGAAAGAGTTGTGGAAGAGGATACAGGAGAGGCAAGGAGTG 1559
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1489 ATCACTTCGATTGAGGAAGCCAAAGAATTGTGGAAGAGGATACAGGAGAGGCAAGGAGTG 1548
Query 1560 AACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACATTTACAAC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 AACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACATTTACAAC 1608
Query 1620 AAGAAGACTTACTCTGATCTTCAACGCCAAGGTCTTATCTGATTGATGAAATCTTCT 1676
||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||
Sbjct 1609 AAGAAGACTTACTCTGATCTTCAACGCCAAGGTCTCATCTGATTGATCACATCCTCT 1665
Score = 82.4 bits (44), Expect = 1e-14
Identities = 65/74 (88%), Gaps = 6/74 (8%)
Strand=Plus/Plus
Query 1690 TTTGTAAAATCAAACCATTCGTCATCTTTTTGTGAGGTTACTTTTGTCACCTTAAAACAG 1749
||||||||||||||||||||||||||||||||||||||| | | | || |||||||||
Sbjct 1721 TTTGTAAAATCAAACCATTCGTCATCTTTTTGTGAGGTTTCGTCT--CA--TTAAAACAG 1776
Query 1750 T-TCTTAGTTTATG 1762
| | ||||||||||
Sbjct 1777 TAT-TTAGTTTATG 1789
> AT2G14285.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr2:6052332-6053994 REVERSE LENGTH=580
Length=580
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 1556 AGTGAACAAATGGAGGCCAGAACTTGAAGAAGAATATGAAGATCGTGAAGGTAACAT 1612
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 522 AGTGAACAAATGAAGGCCAGAACTCGAAGAAGAATATGAAGATCGTGAAGGTAACAT 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88654162470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5