BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487428

Length=556
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06210.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) fami...   802    0.0  


> AT5G06210.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family 
protein | chr5:1878471-1879740 FORWARD LENGTH=692
Length=692

 Score =  802 bits (434),  Expect = 0.0
 Identities = 523/564 (93%), Gaps = 14/564 (2%)
 Strand=Plus/Plus

Query  1    AGTCCTCTCGCGACACATTAATTTTAATGGCGGCGCTCGCAAGGATCGGTGGCCGGCACC  60
            |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGTCCTCTCGCGACGCATAAATTTTAATGGCGGCGCTCGCAAGGATCGGTGGCCGGCACC  60

Query  61   TGAAATCCGTCGGCTTAATAAACTCCTCCGCCTCATGTTTCTTCACTCAACGCCGTGGCG  120
            ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  61   TGAAATCCGTCTGCTTAATAAACTCCTCCGCCTCATGTTTCTTCACACAACGCCGTGGTG  120

Query  121  TTGCTTCCAAGCTCTTTGTTGGTGGATTATCGTTTTGCACTACAGAGCAAGGATTATCTG  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct  121  TTGCTTCCAAGCTCTTTATTGGTGGATTATCGTTTTGCACTACAGAGCAAGGATTGTCTG  180

Query  181  AGGCATTCTCGAAATGTGGCCAAGTTGTTGAAGCTCAAATAGTTATGGACAGAGTCTCTG  240
            ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  AGGCATTTTCCAAATGTGGCCAAGTTGTTGAAGCACAAATAGTTATGGACAGAGTCTCTG  240

Query  241  ACAGATCAAAAGGTTTCGGCTTCGTAACATTTGCTTCTGTTGATGAAGCTCAGAAAGCTT  300
            ||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct  241  ACAGATCAAAAGGTTTCGGTTTCGTGACATTTGCTTCTGCTGACGAAGCTCAGAAAGCTT  300

Query  301  TGATGGAGTTCAACGGACAGCAATTTAACGGCCGTGT-GATATTTGTGGACTACGCAAAG  359
            ||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||
Sbjct  301  TGATGGAGTTCAACGGACAGCAATTAAACGGCCG-GACGATATTTGTGGACTACGCAAAG  359

Query  360  GCGAAGCAGAGT-TT--TGGTGGTGGTCGCTATCCAATAGCTAGAGGACCGCCTGATCCA  416
            |||||||||  | ||  |||||||||| ||||||||||||||||||||||||||||||||
Sbjct  360  GCGAAGCAGTCTCTTGGTGGTGGTGGTGGCTATCCAATAGCTAGAGGACCGCCTGATCCA  419

Query  417  GTGG-AAGTAGCTGCCAC--GA-CAACCGAAACATCGAAAAACGACTAACAAAATCGAAG  472
            |  | || ||||||||||  || |||||||||||||||||| ||||||||||||||||||
Sbjct  420  GCCGTAA-TAGCTGCCACTAGAACAACCGAAACATCGAAAAGCGACTAACAAAATCGAAG  478

Query  473  ATAGCAAATTGCTGGACACTACTGTTGCTATATTACTTGCATTTTACTTGTGATGATATG  532
            |||||||||||||||||||| |||||||||| || |||| |||||||||||| ||  |||
Sbjct  479  ATAGCAAATTGCTGGACACTGCTGTTGCTATGTTTCTTGGATTTTACTTGTG-TGC-ATG  536

Query  533  TGTAAGAGCCATGAGCAAGCTTCG  556
            ||||||||  ||||||||||||||
Sbjct  537  TGTAAGAG--ATGAGCAAGCTTCG  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26674332057


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5