BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487431 Length=718 Score E Sequences producing significant alignments: (Bits) Value AT5G06240.1 | Symbols: emb2735 | embryo defective 2735 | chr5:1... 1177 0.0 > AT5G06240.1 | Symbols: emb2735 | embryo defective 2735 | chr5:1888311-1889698 FORWARD LENGTH=744 Length=744 Score = 1177 bits (637), Expect = 0.0 Identities = 693/720 (96%), Gaps = 4/720 (1%) Strand=Plus/Plus Query 1 ACTGAGCTGCGATCGGCGACTGTCTCTTCTCCGGGATAGTGAAAGATGAAGCTGAAGGTT 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 25 ACTGAGCTGCGATCGGCGACTGTCTCTTGTCCGGGATAGTGAAAGATGAAGCTGAAGGTT 84 Query 61 GTGTATCGTAAGGTCTCCGATTACATTC-GTTACGATCTCAAAGAAATCGTCTTACCTTC 119 ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| Sbjct 85 GTGTATCGTAAGGTCTCCGATTACA-TCTGTTACGATCTGAAAGAAATCGTCTTACCTTC 143 Query 120 ATCACTTCCCGATCCTCCCCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATT 179 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 144 ATCACTTCCCGATCCTCCTCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATT 203 Query 180 TCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTGCGAGATATAGGTCC 239 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 204 CCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCC 263 Query 240 TGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAACCTAAAAAACAAGCGAA 299 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 264 TGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAA 323 Query 300 AGAGACAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGAAT 359 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 324 AGAGGCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGCAT 383 Query 360 GGAGACTTTAAGGCCTGCTTTACATCGTCTGTACATGACACGAGCTTCTCATTATAAAGA 419 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 384 GGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACACGAGCTTCTAATTATAAAGA 443 Query 420 TGCTCTTGCAAGCTTTATAAAAGGTTACCATGAGGGTTTGCAGCAAGTTATGCAGAGTAA 479 ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| ||| Sbjct 444 TGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCTGCAGCAAGTTATGCAGAATAA 503 Query 480 AGCAGAGTCTGAAGCCCCTGCAGATGAAACTGACAAGTCCAAAAAGACTACCTGACCTTT 539 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 504 AGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTCCAAAAAGACTACCTGACCTTT 563 Query 540 TAGTTAGCTCCAAAAGCAGGGTTTAATATGTGAATGCGAGTATGTACGTAGCTAGATCTT 599 |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| Sbjct 564 TAGTTAGCTCCAAAAGCAGGATTTATTTTGTGAATGCGAGTATGTACGTAGCTAGATCTT 623 Query 600 GGGTTCTTTGATGGTGTACCACAACAATCTAAAGATTTCTATCAACTACTTAGTCTTCCA 659 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 624 GGGTTCTTTGATGGTGTACCACAACAATCTAAAGATTTCTATCAACTACGTAGTCTTTCA 683 Query 660 TGCTCAATGTACCCTATTTGTGAAGTAACTTCTAG-AAACCAAAAACATTTAGCTTGACA 718 ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 684 TGCTCAATGTACCCTATTTGTGAAGTAACTTCTAGTAAACAAAAAA-ATTTAGCTTGACA 742 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34812263871 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5