BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487431
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06240.1 | Symbols: emb2735 | embryo defective 2735 | chr5:1... 1177 0.0
> AT5G06240.1 | Symbols: emb2735 | embryo defective 2735 | chr5:1888311-1889698
FORWARD LENGTH=744
Length=744
Score = 1177 bits (637), Expect = 0.0
Identities = 693/720 (96%), Gaps = 4/720 (1%)
Strand=Plus/Plus
Query 1 ACTGAGCTGCGATCGGCGACTGTCTCTTCTCCGGGATAGTGAAAGATGAAGCTGAAGGTT 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 25 ACTGAGCTGCGATCGGCGACTGTCTCTTGTCCGGGATAGTGAAAGATGAAGCTGAAGGTT 84
Query 61 GTGTATCGTAAGGTCTCCGATTACATTC-GTTACGATCTCAAAGAAATCGTCTTACCTTC 119
||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 85 GTGTATCGTAAGGTCTCCGATTACA-TCTGTTACGATCTGAAAGAAATCGTCTTACCTTC 143
Query 120 ATCACTTCCCGATCCTCCCCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATT 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 144 ATCACTTCCCGATCCTCCTCACGTCGTTAAACGCCGCAAATTGACTTGGCACGAGCGATT 203
Query 180 TCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTGCGAGATATAGGTCC 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 204 CCTCGTGTTGAAGGAAGCTTCAAGGCTTTATGCTGCAAGCTGGGTAAGAGATATAGGTCC 263
Query 240 TGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAACCTAAAAAACAAGCGAA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 264 TGAACTTCGTCCAAATGATTACAAGAAGCAAGGGGATGCTGAGCCTAAAAAACAAGCGAA 323
Query 300 AGAGACAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGAAT 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 324 AGAGGCAGAGAACGAGCCCTCTGTTTTGGAAGATCTTGCGGTAGCTGCAAGAGGTGGCAT 383
Query 360 GGAGACTTTAAGGCCTGCTTTACATCGTCTGTACATGACACGAGCTTCTCATTATAAAGA 419
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 384 GGAGACTTTAAGGCCTGCTTTACATCGTCTTTACATGACACGAGCTTCTAATTATAAAGA 443
Query 420 TGCTCTTGCAAGCTTTATAAAAGGTTACCATGAGGGTTTGCAGCAAGTTATGCAGAGTAA 479
||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct 444 TGCTCTTACAAGCTTTATTAAAGGTTACCATGAGGGTCTGCAGCAAGTTATGCAGAATAA 503
Query 480 AGCAGAGTCTGAAGCCCCTGCAGATGAAACTGACAAGTCCAAAAAGACTACCTGACCTTT 539
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 504 AGCAGAGTCTGAAGCCCCAGCAGATGAAGCTGACAAGTCCAAAAAGACTACCTGACCTTT 563
Query 540 TAGTTAGCTCCAAAAGCAGGGTTTAATATGTGAATGCGAGTATGTACGTAGCTAGATCTT 599
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 564 TAGTTAGCTCCAAAAGCAGGATTTATTTTGTGAATGCGAGTATGTACGTAGCTAGATCTT 623
Query 600 GGGTTCTTTGATGGTGTACCACAACAATCTAAAGATTTCTATCAACTACTTAGTCTTCCA 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 624 GGGTTCTTTGATGGTGTACCACAACAATCTAAAGATTTCTATCAACTACGTAGTCTTTCA 683
Query 660 TGCTCAATGTACCCTATTTGTGAAGTAACTTCTAG-AAACCAAAAACATTTAGCTTGACA 718
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 684 TGCTCAATGTACCCTATTTGTGAAGTAACTTCTAGTAAACAAAAAA-ATTTAGCTTGACA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5