BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487432
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06250.2 | Symbols: | AP2/B3-like transcriptional factor fa... 1426 0.0
> AT5G06250.2 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:1892714-1894124 REVERSE LENGTH=915
Length=915
Score = 1426 bits (772), Expect = 0.0
Identities = 860/901 (95%), Gaps = 11/901 (1%)
Strand=Plus/Plus
Query 1 ACCTAACCCTCTCTCCCTATACTCTCCATTCGCTCTCTCTCTTTCGCTTTCTATCTCCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCTAACCCTCTCTCCCTATACTCTCCATTCGCTCTCTCTCTTTCGCTTTCTATCTCCTA 60
Query 61 G-AAAAATGTCAGTCAACCATTACTCCACAGACCACCACCACACTCTCTTGT-G--GCAA 116
| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 GAAAAAATGTCAGTCAACCATTACTCCACAGACCACCACCACACTCTCTTGTGGCAGCAA 120
Query 117 CAGCAACACCGCCACACCACCGACACAACGGAGACAACCACCACCGCCACATGGCTCCAC 176
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CAGCAACACCGCCACACCACCGACACATCGGAGACAACCACCACCGCCACATGGCTCCAC 180
Query 177 GACGACCTAAAAGAGTCACTCTTCGAGAAGTCTCTCACACCAAGCGACGTCGGCAAACTC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GACGACCTAAAAGAGTCACTCTTCGAGAAGTCTCTCACACCAAGCGACGTCGGGAAACTC 240
Query 237 AACCGCCTCGTCATACCAAAACAGCACGCAGAGAAATACTTCCCTCTCAATGCCGTCGTA 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 241 AACCGCCTCGTCATACCAAAACAACACGCAGAGAAATACTTCCCTCTCAATGCCGTCCTA 300
Query 297 GTCTCCTCTGCTGCTACTGACACGTCATCGTCGGAGAAAGGGATGCTTCTAAGCTTTGAA 356
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GTCTCCTCTGCTGCTGCTGACACGTCATCTTCGGAGAAAGGGATGCTTCTAAGCTTTGAA 360
Query 357 GACGAGTCAGGCAAGTCATGGAGGTTCAGATACTCTTATTGGAACAGCAGTCAAAGCTAT 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GACGAGTCAGGCAAGTCATGGAGGTTCAGATACTCTTACTGGAACAGCAGTCAAAGCTAT 420
Query 417 GTCTTGACCAAAGGATGGAGCAGATTTGTCAAAGACAAACAGCTCGATCCAGGCGACGTT 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCTTGACTAAAGGATGGAGCAGATTTGTCAAAGACAAACAGCTCGATCCAGGCGACGTT 480
Query 477 GTTTTCTTCCAACGACACCGTTCTGATTCCCGGAGACTCTTCATTGGGTGGCGCAGACGT 536
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 481 GTTTTCTTCCAACGACACCGTTCTGATTCTAGGAGACTCTTCATTGGCTGGCGCAGACGT 540
Query 537 GGCCAAGGCT-C-C-TCCTCTGCCGCAGCCACTAACTCCGCCGTGAATATGAGTTCTATG 593
|| ||||||| | | ||||| | ||| |||||||||||||||||||||| ||||||||||
Sbjct 541 GGACAAGGCTCCTCATCCTCCGTCGCGGCCACTAACTCCGCCGTGAATACGAGTTCTATG 600
Query 594 GGAGCTCTTTCTTATCATCAAATCCACGCCACTAGTAATTACTCTAATCCTCCCTCTCAC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGCTCTTTCTTATCATCAAATCCACGCCACTAGTAATTACTCTAATCCTCCCTCTCAC 660
Query 654 TCAGAGTATTCCCACTACGGAGCCGCCGTAGCAACAGCGGCTGAGACTCACTCCACACCA 713
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TCAGAGTATTCCCACTATGGAGCCGCCGTAGCAACAGCGGCTGAGACTCACAGCACACCG 720
Query 714 TCGTCATCCGTCGTCGGAAGCTCAAGGACAGTGAGGCTTTTCGGTGTGGATTTGGAGTGT 773
||||| ||||||||||| ||||||||||| |||||||||||||||||| || ||||||||
Sbjct 721 TCGTCTTCCGTCGTCGGGAGCTCAAGGACGGTGAGGCTTTTCGGTGTGAATCTGGAGTGT 780
Query 774 CAAATGGATGAAAATGACGGAGATGATTCTGTTACCGCCGCTGCCACCACCGTTGA-TCT 832
|||||||||||||| |||||||||||||||||| || | ||||||||||||||| |||
Sbjct 781 CAAATGGATGAAAACGACGGAGATGATTCTGTT---GCAGTTGCCACCACCGTTGAATCT 837
Query 833 CCCGATGGTTACTACGGCCAAAACATGTACTATTATTACTCTCATCCTCATAATATGGTA 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 CCCGACGGTTACTACGGCCAAAACATGTACTATTATTACTCTCATCCTCATAACATGGTA 897
Query 893 A 893
|
Sbjct 898 A 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43603239596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5