BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487435
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1205 0.0
AT3G11600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 156 4e-37
> AT5G06270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G11600.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:1912550-1913674 FORWARD LENGTH=1048
Length=1048
Score = 1205 bits (652), Expect = 0.0
Identities = 775/831 (93%), Gaps = 22/831 (3%)
Strand=Plus/Plus
Query 148 AGAGAGAAGACTCTTCTTTGTGATCCAAGTAACCAGTCTTTGAGATCACAGGAACCCTCC 207
||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 188 AGA-AGAAGACTCTTCTTTGTGATACAAGTAACCAGTCTTTGAGATCACAGAAAACCTCC 246
Query 208 TTCTCAATCCGCAAGTTTCAAGATGAGTCGAAGAAGTCCAAAGCTGGAACTGAAGTTGAA 267
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TTCTCAAACCGTAGGTTTCAAGATGAGTCGAAGAAGTCCAAAGCTGGAACTGAAGTTGAA 306
Query 268 TCTTTCGCCGCCTACGTCAAGCCAAAGGAGGATGGTTCGATCTCCAAGCCGCTCTGCGAC 327
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 307 TCTCTCGCCGCCTACGTCAAGCCAGAGGAGGATGGTTCGATCTCCAAGCCGCTCAGCGAC 366
Query 328 GACTTCACCGACATCACCGCCAAGCTCGTGCGTCTCTTCGGAGATGAACCAGGACGAGCC 387
|||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 367 GACTTCACCGACCTCACCTCCAAGCTCATGCGTCTCGTCGGAGATGAACCAGGACGAGCC 426
Query 388 ATCTGTGAGATACTCGACAAGTCCAGAAACAACCTCGATGGTTCTTGTCGGATGTCCTCG 447
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 427 ATCTGTGAGATACTCGACAAGTCCAGAGACTACCTCGATGGTTCTTGTCGGATGTCCTCG 486
Query 448 TTGTCTCATGTACGTTATGCTCTCAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCAC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TTGTCTCATGTACGTTATGCTCTCAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCAC 546
Query 508 CGTTCTTCTTGATTTCCTCCATGAAAACGCCTCAAACGC-AA---A--CGCAGCCGCTGC 561
||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||
Sbjct 547 CGTTCTTCTTGATTTCCTCCATGAAAACGCCACAAACGCCAACGCAAACGCAGCCGCTGC 606
Query 562 TTCCTCAGGTCGCAAGACTCGAAGGAACTGATTGA-GGACCAGTAAAATCAAAATCCTGT 620
|||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 607 TTCCTCTGGTCGCAAGACTCGAAGGAACTGAT-GAAGGACCAGTAAAATCAAAATCCTGT 665
Query 621 -Cttt-tttattttatttatttttcactctttgttttttCTGCGAATGTAGCTGTTGTTT 678
| || ||||| ||||||||||||| | || ||||||| ||||||||||||||||||||
Sbjct 666 TCCTTCTTTATGTTATTTATTTTTC--T-TTCGTTTTTT-TGCGAATGTAGCTGTTGTTT 721
Query 679 T-ATGAGAGTAGTGCTAATCACGCTCCACTCTAAAACCCGAAGAAGAGAAGGTAGGAGAT 737
| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 722 TTATGAGAGTAGTGCTAATCACGCTCCACTCTAAAACCCGGAGAAGA-A-GGTAGGAGAA 779
Query 738 G-AAATTAGGGTTTCCCTATTCAAGAAAATTT-CAAAAAGAGTGGAGCGCGAATAGCACT 795
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 GGAAATTAGGGTTTCCCTATTCAAGAAAATTTTCAAAAAGAGTGGAGCGCGAATAGCACT 839
Query 796 AACTTTTCTCTTTATTTTCTCTTAGCATTTTTCTACCATTTGAGTTCTCTAATGGAAGAA 855
||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 840 AACTTTTCTTTTTCTTTTCTCTCAACATTTTTCTACCATTTGAGTTCTCTAATGGAAGAA 899
Query 856 GAATTTTTATATATATGTGAAAACATGTGTCATTGTCTTC-TACGTATTCTACTCCATCG 914
||||||||| |||||||||||||||||||||||||||||| || | ||||||| |||
Sbjct 900 GAATTTTTAAATATATGTGAAAACATGTGTCATTGTCTTCGTAT-TCCTCTACTCTATCT 958
Query 915 AATTTCTGATACTCTGTTTCGGATGCTCTGTTTCTAGGGCATCTCCGTTTT 965
||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 959 AATTTCTCATACTCTGTTTCGGATGCTCTGTTTCTAGGGCATCTCTGTTTT 1009
Score = 279 bits (151), Expect = 2e-74
Identities = 161/166 (97%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 1 TCTCTTTCTCTCTCACAGTCCTTTCTCACTCATAATTAAATTAAGCCTTAATGAAAAATC 60
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TCTCTCTCTCTCACACAGTCCTTTCTCACTCATAATTAAATTAAGCCTTAATGAAAAATC 72
Query 61 TATCTATCTCCTCCTTTAATTTTCTCTCTGTGTTCTTTCTTGTATATAAAGGCCTAAGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TATCTATCTCCTCCTTTAATTTTCTCTCTGTGTTCTTTCTTGTATATAAAGGCCTAAGCT 132
Query 121 GAAGCAATCCAACCACGAGTAGTAATAAGAGAGAAGACTCTTCTTT 166
||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 133 CAAGCAATCCAACCACCAGTGGTAATAAGAGAGAAGACTCTTCTTT 178
> AT3G11600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to karrikin; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 12 growth
stages; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr3:3667229-3667979 FORWARD LENGTH=751
Length=751
Score = 156 bits (84), Expect = 4e-37
Identities = 113/127 (89%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 412 AGA-AACAACCTCGATGGTTCTTGTCGGATGTCCTCGTTGTCTCATGTACGTTATGCTCT 470
||| || |||||| ||||||||||| || || |||||||| || |||||||||||||| |
Sbjct 272 AGACAATAACCTCAATGGTTCTTGTGGGTTGCCCTCGTTGCCTTATGTACGTTATGCTTT 331
Query 471 CAGAAGACGACCCTAAATGCCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCATG 530
| || || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 332 CTGATGATGACCCTAAATGTCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCAAG 391
Query 531 AAAACGC 537
|||||||
Sbjct 392 AAAACGC 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5