BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487440
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06300.1 | Symbols: | Putative lysine decarboxylase family ... 1616 0.0
> AT5G06300.1 | Symbols: | Putative lysine decarboxylase family
protein | chr5:1921744-1925370 REVERSE LENGTH=1044
Length=1044
Score = 1616 bits (875), Expect = 0.0
Identities = 963/1004 (96%), Gaps = 12/1004 (1%)
Strand=Plus/Plus
Query 1 agagagagagagagagagacaaagtaacaaagagaaaagagagagagagatatggaagag 60
|||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 45 AGAGAGAGAGAGAGAGAGACAAAGTAACAAAGAG-AAAGAGAGAGA-A-ATATGGAAGAG 101
Query 61 acaaaatcgagaTTCAAGAGGATCTGTGTCTTCTGTGGAAGCAGTTCTGGCAAAAAACCT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 102 ACAAAATCGAGATTCAAGAGGATCTGTGTCTTCTGTGGAAGCAGTTCCGGCAAAAAACCT 161
Query 121 TCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTG 221
Query 181 GTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGT 281
Query 241 GGTCGTCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACCGGTGAG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 282 GGTCGCCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACTGGTGAG 341
Query 301 ACCATCGGAGAAGTGAAAGCCGTCGCCGATATGCATCAAAGAAAAGCCGAAATGGCTCGT 360
|||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 342 ACCATCGGAGAAGTTAAAGCCGTGGCCGATATGCATCAAAGGAAAGCTGAAATGGCTCGC 401
Query 361 CAAGCTGACGCTTTCATTGCCCTTCCTGGTGGGTATGGTACGTTGGAAGAATTGCTGGAA 420
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 402 CAAGCCGACGCATTCATTGCCCTTCCTGGTGGGTATGGTACGTTAGAAGAATTGCTGGAA 461
Query 421 GTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGAT 521
Query 481 GGTTACTACAATTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCC 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GGTTACTACAACTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCC 581
Query 541 CCAATGGCTCGTAGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTC 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CCAATGGCTCGTCGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTC 641
Query 601 GAGGAATATGAACCGGAGTTCGATGAGATAACATCGAAATTGGTTTGGGATGAAGTGGAC 660
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 642 GAGGAATATGAACCGGAGTTTGATGAGATAACATCAAAATTGGTTTGGGATGAAGTGGAC 701
Query 661 CGGCTCAGCTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAAGGATATAATATGGGG 720
||| | || |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 702 CGGATAAGTTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAAGGATGTATTATGGGG 761
Query 721 AGTTTATTTTTGGGTAAAAGCAGTGTACAGCGGAA-TTAAAGTTTTTTAACATCAGAAGG 779
||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 762 AGTTTATTTTTTGGTAAAAGCAGTGTACAGCGGAAATTAA-GTTGTTTAACATCAGAAGG 820
Query 780 AAAGGTCGGAAAGAAGACGAAAGAAAGTATTGGGGTCGTTTTGATAA-CATTATTTTGTA 838
|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 821 TAAGGGCGGAAAGAAGACAAAAGAAAGTATTGGGGTCGTTTTGATAAACATTATTTTGTA 880
Query 839 GGGGTGGTT-AAATGTGTGAAGTGGATAAACCACGTGGGTAACTGCTAACCGCGTATATA 897
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 881 GGGGTGGTTTAAATGTGTGAAGTGGATAAACCATGTGGGTAACTGCTAACCGCGTATATA 940
Query 898 CCAAACCCCATCA-TCCCCACTTGTCTTTGTACATTTTGGTTTAATGGAAAAAATGAAGG 956
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 941 CCAAACCCTATCACTCCCCACTTGTCTTTGTACATTTTGGTTTAATGGAAAAAA--A-GG 997
Query 957 ATAGGGCCTATTATCAACAAATGACAAAACGATCCTTTTCTTTT 1000
||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 998 ATAGGGC-TATTTTCAAGAAATGACAAAACGATCCTTTTCTTTT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48978293325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5