BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487441
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06310.1 | Symbols: AtPOT1b | Nucleic acid-binding, OB-fold-... 2198 0.0
> AT5G06310.1 | Symbols: AtPOT1b | Nucleic acid-binding, OB-fold-like
protein | chr5:1928391-1930951 FORWARD LENGTH=1598
Length=1598
Score = 2198 bits (1190), Expect = 0.0
Identities = 1404/1505 (93%), Gaps = 23/1505 (2%)
Strand=Plus/Plus
Query 1 CAAAACCCCAACGATCAGAGAGACATGGAGGA-GACA-AA-AGATGATTACAAATTCCTG 57
|||||||||||||||| |||||||||||||| || | || |||||| ||||||||||||
Sbjct 56 CAAAACCCCAACGATC--AGAGACATGGAGGAGGAGAGAAGAGATGACTACAAATTCCTG 113
Query 58 AGAATTCAAGACGCTTTCAAGGCATTGCATCTTCATGTTAACCTCATTGGAGTCATCGTC 117
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 114 AGAATTCAAGACGCTTTCAAAGCATTGCATCTTCATGTTAACCTCATTGGAGTCATCGTT 173
Query 118 GAGCTAGGATTCTCCAATGGCTCTGATTGTTCCCGTACGCTTAAAATCGTTGATCCATGG 177
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 174 GAGCTAGGATTCTCCAATGGCTCTGATTGTTCATGTACGCTCAAAATCGTTGATCCATGG 233
Query 178 CATTCGGGATCTGGCCTTCCCGTTAAGTTCGTCGCTCGTACCATTCGAG-CGCTTCCTCG 236
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 234 TATTCGGGATCTGGCCTTCCCGTTAAGTTCGTCGCTCGTACCATTCGAGAC-CTTCCTCG 292
Query 237 TGTTGAATCGGTCGGAGATATCATCTTTCTTTCACGTGTAAAGATTGTGCTGATTAATCG 296
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 293 TGTTGAATCGATCGGAGATATCATCTTACTTTCACGTGTAAAGATTGTGCTGATTAACCG 352
Query 297 GAAAATCACAGCTCTTTGCAATGAAACATCTTCTTCGTCTTTTGCTCTGTTCAATGGGAA 356
||||||||||||||| |||||||||||| | ||||||||||||||| | |||||||||||
Sbjct 353 GAAAATCACAGCTCTCTGCAATGAAACAACCTCTTCGTCTTTTGCTTTATTCAATGGGAA 412
Query 357 ACATGGCGTGGATTTTATACCTTACCAAG-CATCACCTAAATTTCTGATGAGAGAACATG 415
|||| ||||||||| ||||||||||| || | ||||||||||| |||||||||||||| |
Sbjct 413 ACATAGCGTGGATTCTATACCTTACC-AGTCCTCACCTAAATTCCTGATGAGAGAACAGG 471
Query 416 ATAAGAACTTCTTATCAAATCTGAGAGAGTGGATGATAACTTACAAGTTTGAAGATGGGT 475
|||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||
Sbjct 472 ATAAGAACTTCTTATCGAATCTGAGAGAATGGATGATCACGTACAAGTTTGAAGATGGGT 531
Query 476 CATGCTGTTTCACATCCCTGAAAGATATCAAAGAAGGGGAATGTTCAAACCTATCTTGCC 535
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 532 CATGCTGTTTCACATCCCTGAAAGATATCAAAGAAGGCGAATGTTCAAACCTATCTTGCC 591
Query 536 TGATTGTTCACATTTCCAAGGTCTATAAAGATAGGTGGTACATCTTTGTTTGGGATGGAA 595
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 592 AGATTGTTCACATTTCCAAGGTCTATAAAGATAGATGGTACCTCTTTGTTTGGGATGGAA 651
Query 596 CTGAGATGCCACCATGCAACATCTTGGTAAAGTCAGAAAGGCTTCCTTTATGTGTCGAAC 655
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 652 CTGAGATGCCACCCTGCAACATCTTGGTTAAGTCAGAAAGGCTTCCTTTATGTGTAGAAC 711
Query 656 CTGAGATGTTGCCTACATACATGTTACGTAAGTTTCCTACTTTTGGTTCCGTCTTGAGGA 715
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 712 CCGAGATGTTGCCTACATACATGTTACGTAAGTTTCCTACTTTTGGTTCCGTTTTGAGGA 771
Query 716 TCCTAGTAGATAGAGTTAGTGAGAGGCAGGCCATTCACTGTCTTCAACCTGGTCAACACG 775
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 TCATAGTAGATAGAGTTAGTGAGAAGCAGGCCATTCACTGTCTTCAACCTGGTCAACACG 831
Query 776 TGAAGCTTCTGAACCTTTTCTTTCAAGTAAACATGGGATTATGGAACGCCACTTTTACTC 835
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 832 TGAAGCTTCTGAACCTTTTCTTTCAAGTAAATATGGGATTATGGAACGCCACTTTTACTC 891
Query 836 CCTCTACAAAGATGCAGTACACAATGAGCAGAGAGTTGCAAGCTTTTAGTCCTCAAAGAA 895
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 892 CCTCTACAAAGATGCAGTACACAATGAGCAGAGAGATGGAAGCCTTTAGTCCTCAAAGAA 951
Query 896 TGTATGGGGAGAAGTTGTCATCGAGATGGAACCCCATTGCACGTTGCATTAGTCCTTCAC 955
||| |||||||||||| ||| ||||||||||||| || || ||||||||||||| |||||
Sbjct 952 TGTGTGGGGAGAAGTTTTCACCGAGATGGAACCCAATCGCGCGTTGCATTAGTCGTTCAC 1011
Query 956 ATTCAGGAATCACAGGGGTTGCCCATGAGGACGCTCCGTTTGTTTCTCTGATGGACATTC 1015
|||| | ||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1012 ATTCTGAAATCACAGGGGTTGCCCATGACGATGCTCCATTTGTTTCTCTGATGGACATCC 1071
Query 1016 TGACCTATCACAATGTGACTGCTAAATTCAGGTGTGTTGTTCGGTTCATACAAGTGTATC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGACCTATCACAATGTGACTGCTAAATTCAGGTGTGTTGTTCGGTTCATACAAGTGTATC 1131
Query 1076 CCCGAGATGTCAGAAAACTCCGCGAT-TCCCACGGAAATATCAAACTGCTAGCTATACTA 1134
||||||| |||||||||||||| ||| || |||||||||||||| || |||||||||||
Sbjct 1132 CCCGAGACGTCAGAAAACTCCGTGATATCA-ACGGAAATATCAAATTGGTAGCTATACTA 1190
Query 1135 GAAGATGCAACCGCCAGAATCCACGCTTCTCTATATGCTGCTGAAGGGGAAAAGTTTTTC 1194
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1191 GAAGATGCAACCGCCAGAATCCATGCTTCTCTATATGCTGATGAAGGGGAAAAGTTTTTC 1250
Query 1195 GGGTGTGAAGACGAATCTGATGAAGAGGCCCTGGTCAAGAAGCTGAATAGATTGTTAGGA 1254
|||||||| |||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1251 GGGTGTGA---CGAATCTGATGAAGAGGCTCTAGTCAAGAAGCTGAATAGATTGTTGGGA 1307
Query 1255 GGTGAGGAGATGGAGCAAGTGCCAAGAAATCCTCCATGGGTACAATGTTGCCTGTTCTCA 1314
||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1308 GGTGAAGAGATGGAGAAAGTGCCAAGAAATCCTCCATGGGTACAATGTTGCTTGTTCTCA 1367
Query 1315 TTCTACAAACACAAAATGGATCAATGGGGAAGCAGAAGATTCCGGATTTTTGATACATGG 1374
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||
Sbjct 1368 TTCTACAAACACAAAATGGATCAGTGGGAAAGCAGAAGATTCCGCATTTTTGATACTTGG 1427
Query 1375 ATCAATGCTTCATGAGACaaaaaaaaTAATGCTAATTGAATAGTTATTGGTAATGATAAA 1434
|||||||||||||||||||| | |||||||||||| ||||||||| | | | ||||
Sbjct 1428 ATCAATGCTTCATGAGACAATCA---TAATGCTAATTGTATAGTTATTAGCA-T--TAAA 1481
Query 1435 CAA---GTGATTATTTATTTACATAGAACCACACAATAAAATATTACATAAGAAAAATAT 1491
||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1482 CAAAATGTGATTATTTATTTACATGGAACCATACAATAAAACATTACATAAGAAAAATAT 1541
Query 1492 CTCTC 1496
|||||
Sbjct 1542 CTCTC 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5