BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487443
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06340.1 | Symbols: ATNUDX27, NUDX27 | nudix hydrolase homol... 1439 0.0
> AT5G06340.1 | Symbols: ATNUDX27, NUDX27 | nudix hydrolase homolog
27 | chr5:1936366-1938114 FORWARD LENGTH=988
Length=988
Score = 1439 bits (779), Expect = 0.0
Identities = 888/939 (95%), Gaps = 14/939 (1%)
Strand=Plus/Plus
Query 1 TTTTATCACTTGTGAGAAAATGGAAACCAATCACCGATTGTTGTGAGCCGGACGAAGGAG 60
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 9 TTTTATCACTAGTGAGAAAATTGAAACCAATCACCGATTGTTCTGAGCCGGACGAAGGAG 68
Query 61 AGGAAGCCGCCTAAGAAGTTGCCGTCGT----CATGGCCGTGAAGGCTTCTGGATTCATC 116
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 69 AGGCAGCCGCCTAAGAAGTTGCCGTCGTGCGCCATGGCCGTGAAGGCTTCTGGATTCATT 128
Query 117 GGGAAATCAGCAATCTCAGTTCATCTAGATTTCTCTTCGTTTCCTGTGAAATTCTCATGC 176
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 129 GGGAAATCAGCAATCTCTGTTCATCTAGATTTCTCTTCGTTTCCTGTGAAATTTTCATGC 188
Query 177 TTTAAACAGTTTTCTGTATCTACTCCAAAGCCACTGGTCGTTTTATCCGTGGCCTTATCG 236
|| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 189 TTGAAACAGTTTTCTGTATCTTCACCAAAGCCACTGGTCGTTTTATCCGTTGCCTTATCG 248
Query 237 CCGCCGGCAAGAACAGTTGAGTCTCCGCCGGTTGGTTACCGGAAAAATGTTGGGATTTGT 296
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 249 TCGCCGGCAAGAACAGTTGAGTCTCCGCCTGTTGGTTACCGGAAGAATGTTGGGATTTGT 308
Query 297 CTCGTTGGCCCATGTAGAAAGATTTTTACGGCATCAAAGATTCACATTCCGGATACATGG 356
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 309 CTCGTTAGCCCATGTAGAAAGATTTTTACGGCGTCAAAGATTCACATTCCGGATACATGG 368
Query 357 CAGATGCCTCAGGGTGGAGCTGATGAGGGAGAAGATTTGAGAAACGCTGCCTTTAGAGAA 416
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 369 CAGATGCCTCAGGGTGGTGCTGATGAGGGAGAAGATTTGAGGAACGCTGCCTTTAGAGAA 428
Query 417 CTGAGAGAAGAAACAGGGGTTACCTCGGCGGAATTCATTGCGGAGATACCAAACTGGCTG 476
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 429 CTGAGAGAAGAAACAGGGGTTACTTCGGCAGAATTCATTGCGGAGATACCAAACTGGCTG 488
Query 477 ACCTATGATTTTCCCCGAGAAGTGAAGGACAAACTAAACCGGAAATGGCGAACAAGTTAC 536
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 489 ACCTATGATTTTCCCCGAGAAGTAAAGGACAAACTAAACCGGAAATGGCGAACAAGTTAC 548
Query 537 AAAGGCCAAGCTCAGAAGTGGTTTCTCTTCAAGTTCACGGGCAAGGAGGAAGAGATAAAT 596
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 549 AAAGGCCAAGCTCAGAAGTGGTTTCTCTTTAAGTTCACGGGCAAGGAAGAAGAGATAAAT 608
Query 597 CTCCTGGGAGACGGTACTGCAAAACCAGAGTTTAAGGTGTGGTCGTGGATGCTACCGGAA 656
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTCCTTGGAGACGGTACTGCAAAACCAGAGTTTAAGGTGTGGTCGTGGATGCTACCGGAA 668
Query 657 CAAGTGATTGAACATGCTGTGTATTTCAAGAGACCTGTCTATGAGCATGTCATAAAGCAA 716
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 669 CAAGTTATTGAACATGCTGTATATTTCAAGAGACCTGTTTATGAGCATGTCATAAAGCAA 728
Query 717 TTCAACCCTTATTTTGTGGATGAAGAAAACGATTCCATGAACTTGTCCAAGGATTGAATG 776
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 729 TTCAACCCTTATTTTGTGGATGAAGAAAAGGATTCCATGAACTCGTCTAAGGATTGAATG 788
Query 777 TGCACAAAGATTCATCAAGTGAATACTGATTAGGAG-AAATCAATCAATTCATTATACAG 835
|||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 789 TGCACAAAGATTCACCAAGTGAATACTGATTAGAAGCAAATCAATCAATTCATTATACTG 848
Query 836 GTTTCTCTTGAACCTCATCAAAGATAAAAATGCATGAATCTCTTCATGTTCAGACATTGA 895
|||||||||||| ||||||||| |||||||| |||||||||| | | | ||||||
Sbjct 849 GTTTCTCTTGAATCTCATCAAAAATAAAAATTCATGAATCTC---A-G---A--CATTGA 899
Query 896 TCTTGTAGTTTGATACTATATATAAATCCTCACGAATTA 934
|||||||||||||| ||||||||||||||||||||||||
Sbjct 900 TCTTGTAGTTTGATGCTATATATAAATCCTCACGAATTA 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5