BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487444
Length=2800
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06350.1 | Symbols: | ARM repeat superfamily protein | chr5... 3179 0.0
AT5G27010.1 | Symbols: | ARM repeat superfamily protein | chr5... 2060 0.0
AT4G04680.1 | Symbols: | INVOLVED IN: biological_process unkno... 440 3e-122
> AT5G06350.1 | Symbols: | ARM repeat superfamily protein | chr5:1938781-1944357
FORWARD LENGTH=2794
Length=2794
Score = 3179 bits (1721), Expect = 0.0
Identities = 1900/1987 (96%), Gaps = 9/1987 (0%)
Strand=Plus/Plus
Query 818 GTTTTGCCCATGTCTGTGGGAGATTGAAGGAGATTGTTGGTGTCTTAATCAATTGTTTCC 877
||| ||||||||||| | ||||||||||||| |||||| |||||||||||||||||||
Sbjct 779 GTTATGCCCATGTCTATCAGAGATTGAAGGAGGTTGTTGCAGTCTTAATCAATTGTTTCC 838
Query 878 AGGATTTCATTCCATTGATTCATGCTCCGCGAGGATTCGATGCAGATTCATTTGATTGCA 937
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 AAGATTTCATTCCATTGATTCATGCTCCGCGAGGATTCGATGCACATTCATTTGATTGCA 898
Query 938 TACACCATCTATTTCGCAGCATAGG-TATTGCAATCAAGTTTTCCATTCGTAGGCACATG 996
|||| ||| || ||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 899 TACAACATATACTTCGCAGCATAGGTTA-TGCAATCAAGTTTTCCATTCGTAGGCACAAG 957
Query 997 CAAAGACAGACTGCATGGCAACCTGCATCTGAAGAAGTTACTCTGATGATATTGGATCAG 1056
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CAAAGACAGACTGCATGGCGACCTGCATCTGAAGAAGTTACTCTGATGATATTGGATCAG 1017
Query 1057 GACATTGCATCAATACTGTTaaaaaaaTTACTTGGTTCATTTCCTCTCAATCCAGAAAAC 1116
||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 1018 GACATTGCATCGATGCTGTTAAAAAAGTTACTTGGTTCATTTCCCCTCGATCCAGAAAAC 1077
Query 1117 AATCTTTATGGAAAGGGTGATGA-AAGGTACTTTACACTCAACAGTGTATTGACAGAAAT 1175
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1078 AATCTTTATGGAAAGGGTGATGATAA-GTACTTTAAACTCAACAGTGTATTGACAGAAAT 1136
Query 1176 CTTTTTGGAAGTAAGTGAATGGAGCCAACTTCCTACTGATCTTTCCAATAGATTTCTGGA 1235
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1137 CTTTTTGGAAGTAAGTGAATGGAGCCACCTTCCTACTGATCTTTCCAATAGATATCTGGA 1196
Query 1236 ATTTATTGAGAATACACTACTAGGCAAGATCACCAGGAGCATTAGGCTTAGTAAAGATAT 1295
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1197 ATTTATTGAGAATACACTACTAGGCAAGATCACCAGGAGCATTAGGCTTCGTAAAGATAT 1256
Query 1296 TCACGAAAAGACTTTACTTACACTCTTGCCCTTTGTTCCAAAACTTATTCTGAGGGTGGA 1355
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||
Sbjct 1257 TCACGAAAAGACTTTACTTGCACTCTTGCCCTTTCTTCCAAAACTTATTCTGAGGGTAGA 1316
Query 1356 CCGTGATTGGAGAGATAATCTTCTGCAGGCATTTACTATTGCCTTCAGCGATTGCAAACC 1415
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1317 CCGTGATTGGAGAGATAATCTTCTGGAGGCATTTACTATTACCTTCAGCGATTGCAAACC 1376
Query 1416 AGAGTCTGAACTCAAATTAGCCTGCATTTCAATTGTTAGAGACATGATTATCCCTAATGG 1475
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1377 AGAGTCTAAACTCAAATTAGCCTGCATTTCAACTGTTAGAGACATGATTATCCCTAATGG 1436
Query 1476 AGATATCCTCTT-TCCCAATGCAAGTGATCCAACGGTAAATAACTACCAGGTGGCTTGGG 1534
||||||||| || ||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 1437 AGATATCCT-TTATCCCAATGCAAGTGATCCAACGGTACATTACTACCAGGTTGCTTGGG 1495
Query 1535 TCAACAAACTTCCATCACTGCTTAATCAGTTGGGTGATAAGCATCCCGTATCTACCCAGG 1594
|||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||
Sbjct 1496 TCAACAAACTTCCATCGCTGCTTAATCAGTTGGGTAATGAGCATCCCGTATCTACTCAGG 1555
Query 1595 TTGTTTTGCAACTCTTACTCGACCTTGGGCGAGTTGGGTGTCTGAATACTTCCCCCACAT 1654
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1556 TTGTGTTGCAACTCTTACTCGACCTTGGGCGAGTTGGGTGTCTGAATGCTTCCCCCACCT 1615
Query 1655 GTGAAGATGACATCAGAAACTTCTTCAGCCTTTGTCAGGGAGAAGGTGATGTGCCCGGTG 1714
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1616 GTGAAGATGACATCAGAAACTTCTTCAGCCTTTGTCAGGGAGAAGGTGATGTACCTGGTG 1675
Query 1715 GACCTTTTGCGAGTCTCCCTCGGGAATCCCAAGAACTGGCTCTCTGTTTCCTTTACTACT 1774
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1676 GACCTTTTGCAAGTCTCCCTCGGGAAGCCCAAGAACTGGCTCTCTGTTTCCTTTACTACT 1735
Query 1775 TCACCACAGACAAATTCAGCTCCCCTATGATGAAAGCAATAGTTTCATGCTGTTTATATC 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCACCACAGACAAATTCAGCTCCCCTATGATGAAAGCAATAGTTTCATGCTGTTTATATC 1795
Query 1835 CACAACTTGAACCAGCTGTGTTGTATCGGATAGTGGAAATTCTTCACACTGCCTATAGAG 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CACAACTTGAACCAGCTGTGTTGTATCGGATAGTGGAAATTCTTCACACTGCCTATAGAG 1855
Query 1895 CTGGATATATCCAGATTACAGATCATTTTAGCTTTCTTATCACCTTAATTGCACGTTTCA 1954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1856 CTGGATATATCCAGATTACAGATCATTTTAGCTTCCTTATCACCTTAATTGCACGTTTCA 1915
Query 1955 AAGTTGCCCCAGAGAAACTTCAGTCACCGATAGAGTGTAATGAGCGGGAGACATATTGTG 2014
|||||| |||||||||||| |||||| |||||||||||||||| ||||||||||||||||
Sbjct 1916 AAGTTGTCCCAGAGAAACTGCAGTCATCGATAGAGTGTAATGAACGGGAGACATATTGTG 1975
Query 2015 GCACATTTAAAGAAGTTACAAAGCTTGTGTGCTCATGTTTGTCAGAAATGGGTGATAGTT 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GCACATTTAAAGAAGTTACAAAGCTTGTGTGCTCATGTTTGTCAGAAATGGGTGATAGTT 2035
Query 2075 CTCTTGTCCTTCAGATTGTAGAGAAAGTTTTACTCGAACAAATAATTTTGAAGCCTGCTT 2134
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2036 CTCTTGTCCTTCAGATTGTAGAGAAAGTTTTACTCGAACAAATAGTTTTGAAGCCTGCGT 2095
Query 2135 TGGACAATGGGTGTGCCATACTCAGGATGATCTGCGTGTTGGACTCTACCCCTATCAGAC 2194
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2096 TGGATAATGGGTGTGCCATACTCAGGATGATCTGCGTGTTGGACTCTACCCCTACCACAC 2155
Query 2195 TTTCTGAAAGGAGTGTAACCACTCTAAGTGAGTTCTTACCGGGATATATGATCGACATAG 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2156 TTTCTGAAAGGAGTGTAACCACTCTAAGTGAGTTCTTACCGGGATATATGATCAACATAG 2215
Query 2255 TCAATTGTATACCAGAAGATAAGGAGAACTCTTACCTTTACATACAAACATGTCTCTACT 2314
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 TCAATTGTATACCAGAGGATAAGGAGAACTCTTACCTTTACATACAAACATGTCTCTACT 2275
Query 2315 ATTTAGTACCTTGCTATTTCTTGTTCAATCGGAGCTCCAAACTCACAGAGCAGGTTCTGA 2374
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2276 ATTTAGTACCTTGCTATTTCTTGTTCAATCGGAGCTCCAAACTCACAGAACAGGTTCTGA 2335
Query 2375 TAAGAATGCGATTAATGATTAGTGAAAACACAAATGCGCTAGAATTGGTACAAGACAGGG 2434
|||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2336 TAAGAATGCGATCAATGATTAGTGAAAACACAAAAGCGCTAGAATCGGTACAAGACAGGG 2395
Query 2435 AGAGTGGTCGAAACTCATTGAATTTGATACAATGCATTATCTCTGTGATCCTGCTGATGC 2494
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2396 AGAGCGGTCGAAACTCATTGAATATGATACAATGCATTATCTCTGTGATCCTGCTGATGC 2455
Query 2495 ACAATGACGTCAAAGTTAGGAAGATAATATCATCATTCAAGTCAGAGATCGATTTGATTC 2554
|||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 2456 ACAACGACGTCAAAGTTAGGAAGATAATATCGTCATTCAAGCCCGAGATCGATTTGATTC 2515
Query 2555 TGCAGAACGTTATCACATTGCAGTCCTCACGAAGCACGAGCTTGACTGTAGAAGGAAAGC 2614
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 TTCAGAACGTTATCACGTTGCAGTCCTCACGAAGCACGAGCTTGACTGTAGAAGGAAAGC 2575
Query 2615 ATATGATGAAAATTGCGGGAGAGCGACTTAGGATTGCATCCAAAAGCTTACTCGCGTAAT 2674
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2576 ATATGATGAAAATTGCGGGAGAGCGACTTAGGATTGCGTCCAAAAGCTTACTCGCGTAAT 2635
Query 2675 AAAGTTCTACAACTGTAACATAAAAAGATTTGTGCTCTCTTTACAAATGATGCAAAAGAT 2734
|||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 2636 TAAGTTCTACAACTGTAACATAAAATGATTTGTGCTCTCTTTATAAAGGATGCAAAAGAT 2695
Query 2735 ATGACT-ATTCTTGGTTGGTTTGAGAAAGAACCAATTTTGATGGCAATTATGTAGAATTT 2793
| |||| | |||||||| |||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 2696 ACGACTTAG-CTTGGTTG-TTTGAGAAAGCACCAATTTTGATGACAATTTTGTAGAATTT 2753
Query 2794 TGGTTTA 2800
|||||||
Sbjct 2754 TGGTTTA 2760
Score = 1219 bits (660), Expect = 0.0
Identities = 741/780 (95%), Gaps = 6/780 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCGCTCCAAGGCTCCTGCAAAGAAGCAGCAAAAGAAAGGAATTGATTTCAAGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCGCTCCAAGGCTCCTGCAAAGAAGCAGCAAAAGAAAGGAATTGATTTCAAGAAA 60
Query 61 ATTAAGAGAAAGCTCGGGAGAAAATTACCTCCACCGAATAATGCAACTAACACTGAGATT 120
||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||
Sbjct 61 ATTAAGAGAAAGCTCGGGAGAAAATTACCACCACCAAAGAATGCAACCAACACTGAGATT 120
Query 121 AAATCCAAAGCAATTATACTTCCTGAGCAAAGTGTGGCTGCTGAAAAGAGTGGCTTCGCT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAATCCAAAGCAATTATACTTCCTGAGCAAAGTGTGGCTGCTGAAAAGAGTGGCTTAGCT 180
Query 181 ACAAGTAAGAAAGGCTTAACCTTGAAGGAGCTTCTGCAACAAACT-CGTCATCACAATGC 239
||||||||||||||||| || |||||||| ||||||| ||| ||| | ||||||||||||
Sbjct 181 ACAAGTAAGAAAGGCTTGACTTTGAAGGAACTTCTGCCACAGACTTC-TCATCACAATGC 239
Query 240 TAAAGTTCGCAAAGATGCATTATATGGTATCAAAGACCTTTTTAAGAATCATCCAGAAGA 299
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 240 CAAAGTTCGCAAAGATGCATTGTATGGTATCAAAGACCTTTTCAAGAATCATCCAGAAGA 299
Query 300 GCTGCAGTCACATAAATATGCTATCATACAGAAACTCAGGGAACGCATTAGTGATGATGA 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTACAGTCACATAAATATGCTATCATACAGAAACTCAGGGAACGCATTAGTGATGATGA 359
Query 360 TAATCTAGTGAGAGATGCTTTTTATCAACTATTTAAAACTGACATCTTTCCTGCTT-GTA 418
||| ||||||||||||| |||||||||||||||| | | ||||||||||||| ||| |||
Sbjct 360 TAAGCTAGTGAGAGATGTTTTTTATCAACTATTTGATATTGACATCTTTCCT-CTTTGTA 418
Query 419 AAGAGGATAACCAGGGCCCTATGGTGTCACTTTTGATGCCATACATATTTAGCGCTATGG 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAGGATAACCAGGGCCTTATGGTGTCACTTTTGATGCCATACATATTTAGCGCTATGG 478
Query 479 CT-AGTTCAGTTATTGATGTTCGTTTGATGGCTTTCAAATTTTTCCACCTTGTTGTGGAG 537
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCA-TTCAGCTATTGATGTTCGTTTGATGGCTTTCAAATTTTTCCACCTTGTTGTGGAG 537
Query 538 TACTACCCGCCTACCTTTTCCTTGGATGCTGAAAAGATTCTCGAAAACTACAAAGATATT 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TTCTACCCGCCTACCTTTTCCTTGGATGCTGAAAAGATTCTCGAAAACTACAAGGATATT 597
Query 598 ATACAGAAAAATCATTTTTATGTGCAAGATAAAAACAAGCTAAAGGTAGCTCTTTCTGGG 657
|||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||
Sbjct 598 ATACAGAAAAATCATTTTTATGTGGAAGATAAAAGCAAGCTAAAGGTGGCTCTTTCTGGG 657
Query 658 TTGGCACATTGCCTCTCGCTGTTGCCATGTGATGAAAGCGACACCGAATCACaaaaaaaG 717
||| |||||||||||||| | |||||||||||||| ||||||||| ||||||||||||||
Sbjct 658 TTGTCACATTGCCTCTCGGTTTTGCCATGTGATGAGAGCGACACCAAATCACAAAAAAAG 717
Query 718 GGACCTTCACAGAATGAAACACTACTCGCCTATGAGCAAGATGCTGCAAAAGATTGTGTT 777
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 718 GGACCTTCACAGAATGAAACACTACTCACCTATGAGCAAGATGCTACAAAAGATTGTGTT 777
> AT5G27010.1 | Symbols: | ARM repeat superfamily protein | chr5:9503315-9507569
REVERSE LENGTH=2592
Length=2592
Score = 2060 bits (1115), Expect = 0.0
Identities = 1631/1871 (87%), Gaps = 72/1871 (4%)
Strand=Plus/Plus
Query 818 GTTTTGCCCATGTCTGTGGGAGATTGAAGGAGATTGTTGGTGTCTTAATCAATTGTTTCC 877
||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 779 GTTTTGCCCATGTCTCTGGGATACTGAAGGAGATTGTTGCAGTCTTAATCAATTGTTTCC 838
Query 878 AGGATTTCATTCCATTGATTCATGCTCCGCGAGGATTCGATGCAGATTCATTTGATTGCA 937
| |||||| ||||||| ||||||||| ||| | || || || ||| |||||||||||||
Sbjct 839 AAGATTTCCTTCCATTAATTCATGCTTCGCAAAGAATCAATAAAGAATCATTTGATTGCA 898
Query 938 TACACCATCTATTTCGCAGCATAGG-TATTGCAATCAAGTTTTCCATTCGTAGGCACA-T 995
| | |||| || |||| |||||||| || ||||||||||||||||||||||||||||| |
Sbjct 899 TCCGCCATATACTTCGTAGCATAGGTTA-TGCAATCAAGTTTTCCATTCGTAGGCACACT 957
Query 996 GCAAAGACAGACTGCATGGCAACCTGCATCTGAAGAAGTTACTCTGATGATATTGGATCA 1055
|||||||| ||| ||||| |||| || |||||||| ||||||||||||| ||||||
Sbjct 958 -CAAAGACACACTAAATGGCTACCTTCACCTGAAGAAAATACTCTGATGATACTGGATC- 1015
Query 1056 G-GACATTGCATCAATACTGTTaaaaaaaTTACTTGGTTCATTTCCTCTCAATCCA-GAA 1113
| |||||||||||||| | | ||||| ||||||||||| ||||| || ||| || |||
Sbjct 1016 GTGACATTGCATCAATGTTATCGAAAAAGTTACTTGGTTCTTTTCCACTTAAT-CACGAA 1074
Query 1114 AACAATCTTTATGGAAAGGGTGATGAAAGGTACTTTACACTCAACAGTGTATTGACAGAA 1173
|||||| ||| | || | | | | | | ||| ||||||||||||||
Sbjct 1075 AACAAT-TTT-T-------CTG-T---A-G-A---GA-A--CAATGGTGTATTGACAGAA 1113
Query 1174 ATCTTTTTGGAAGTAAGTGAATGGAGCCAACTTCCTACTGATCTTTCCAATAGATTTCTG 1233
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1114 ATCTTTTTGGAAGTAAGTGAATGGAGCCACCTTCCTTGTGATCTTTCCAATAGATTTCTA 1173
Query 1234 GAATTTATTGAGAATACAC-TACTAGGCAAGATCACCAGGAGCATTAGGCTTAGTAAAGA 1292
||||||||||||||| | | ||||||| ||||||||| || | | || | | ||
Sbjct 1174 GAATTTATTGAGAATGC-CTTACTAGGAAAGATCACC---AG-A--A-GC--A--ATAG- 1220
Query 1293 TATTCACGAAAAGACTTTACTTACACTCTTGCCCTTTGTTCCAAAACTTATTCTGAGGGT 1352
| || || |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1221 TCTT---GATAAGACTTTACTTGCACTCTTGCCCTTTGTTCCAAAACTTCTTCTGAGGGT 1277
Query 1353 GGACCGTGATTGGAGAGATAATCTTCTGCAGGCATTTACTATTGCCTTCAGCGATTGCAA 1412
|||||||||| |||||||||||||| ||||||||||||||||| |||||| | |||||||
Sbjct 1278 GGACCGTGATCGGAGAGATAATCTTATGCAGGCATTTACTATTACCTTCAACAATTGCAA 1337
Query 1413 ACCAGAGTCTGAACTCAAATTAGCCTGCATTTCAATTGTTAGAGACATGATTATCCCTAA 1472
|||||||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||
Sbjct 1338 ACCAGAGTCTTCACTTAAATTAGCCTGCATTTCAGTTGTTAAAGATTTGATTATCCCTAA 1397
Query 1473 TGGAGATATCCTCTT-TCCCAATGCAAGTGATCCAACGGTAAATAACTACCAGGTG-GCT 1530
|||||||||||| || | || ||| ||||||||| |||||||||||||| | | |||
Sbjct 1398 TGGAGATATCCT-TTAT-CC----CAA-TGATCCAACCGTAAATAACTACCA-GCGCGCT 1449
Query 1531 TGGGTCAACAAACTTCCATCACTGCTTAATCAGTTGGGTGATAAGCATCCCGTATCTACC 1590
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1450 TGGGTCAACAAACTTCCATCACTGCTTAACCAGTTGGGTGATAAGCATCATGTATCTACC 1509
Query 1591 CAGGTTGTTTTGCAACTCTTACTCGACCTTGGGCGAGTTGGGTGTCTGAATACTTCCCCC 1650
|||||||||||||||| || |||||||||| ||||||||| ||||||||| |||| ||
Sbjct 1510 AAGGTTGTTTTGCAACTTTTGCTCGACCTTGCGCGAGTTGGATGTCTGAATGCTTCTCCA 1569
Query 1651 ACATGTGAAGATGACATCAGAAACTTCTTCA-GCCTTTGTCAGGGAGAAGGTGATGTGCC 1709
|||| |||||| || || |||| |||||||| ||||| ||| ||||||||||| |||||
Sbjct 1570 ACATTTGAAGAAGAGATAAGAAGCTTCTTCATCCCTTT-TCATGGAGAAGGTGAGGTGCC 1628
Query 1710 CGGTGGACCTTTTGCGAGTCTCCCTCGGGAA-TCCCAAGAACTGGCTCTCTGTTTCCTTT 1768
||||||||||||| ||||||||| ||||| | |||||| ||||||||||||||||||
Sbjct 1629 AGGTGGACCTTTTGTAAGTCTCCCTAGGGAAGT-ACAAGAAGTGGCTCTCTGTTTCCTTT 1687
Query 1769 ACTACTTCACCACAGACAAATTCAGCTCCCCTATGATGAAAGCAATAGTTTCATGCTGTT 1828
||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1688 ACTACTTCATCATAGACAATTTCAGCTCCCCTATGCTGAAAGCAATAGTTTCATGCTGTT 1747
Query 1829 TATATCCACAACTTGAACCAGCTGTGTTGTATCGGATAGTGGAAATTCTTCACACTGCCT 1888
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1748 TATATGAACAACTTGAACCAGCTGTGTTGTATCGGATAGTGGAAATTCTTCAAACTGCCT 1807
Query 1889 ATAGAGCTGGATATATCCAGATTACAGATCATTTTAGCTTTCTT-ATCACCTTAATTGCA 1947
|||||| ||||||||| ||||||||||||||||||||| ||||| || ||||| ||| ||
Sbjct 1808 ATAGAGGTGGATATATTCAGATTACAGATCATTTTAGC-TTCTTCATTACCTTGATTTCA 1866
Query 1948 CGTTTCAAAGTTGCCCCAGAGAAACTTCAGTCACCGATAGAGTGTAATGAGCGGGAGACA 2007
||||||||||||| |||||||||||| | || |||| |||||| ||||| || || ||
Sbjct 1867 CGTTTCAAAGTTGTCCCAGAGAAACTGAACTCGGCGATTGAGTGTGATGAGAGGAAGGCA 1926
Query 2008 TATTGTGGCACATTTAAAGA-AGTTACAAAGCTTGTGTGCTCATGTTTGTCAGAAATGGG 2066
||||||||||||||||| | | ||||||| ||||||||||||| |||||||||||||||
Sbjct 1927 AATTGTGGCACATTTAAA-ACACTTACAAACCTTGTGTGCTCATATTTGTCAGAAATGGG 1985
Query 2067 TGATAGTTCTCTTGTCCTTCAGATTGTAGAGAAAGTTTTACTCGAACAAATAATTTTGAA 2126
|||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 1986 TGATAGCTCTCTTGTCCTCCAGATTCTAGAGAAAGTTTTTGTCGAACAAATAATTTTGAA 2045
Query 2127 GCCTGCTTTGGACAATGGGTGTGCCATACTCAGGATGATCTGCGTGTTGGACTCTACCCC 2186
|||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||
Sbjct 2046 GCCTGCGTTGGACAATGGGTGTGCTATACTCAGGATGATCTGCGCGTTAGACTCTAAACC 2105
Query 2187 TATC-AGACTTTCTGAAAGGAGTGTAACCACTCTAAGTGAGTTCTTACCGGGATATATGA 2245
|| | ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct 2106 TA-CAAGACTTTCTGAAATCAGTGTAACCACTCTAAGTGAATTCTTACCGGGATATTTGA 2164
Query 2246 TCGACATAGTCAATTGTATACCAGAAGATAAGGAGA-ACTCTTACCTTTACATACAAACA 2304
|||| |||||||||||||||||||||||||| |||| | ||||||||||| || ||||||
Sbjct 2165 TCGATATAGTCAATTGTATACCAGAAGATAAAGAGAGA-TCTTACCTTTATATGCAAACA 2223
Query 2305 TGTCTCTACTATTTAGTACCTTGCTATTTCTTGTTCAATCGGAGCTCCAAACTCACAGAG 2364
||||| ||||||||| |||||||||| ||| ||||| | ||||||||||||||||||||
Sbjct 2224 TGTCTGTACTATTTATTACCTTGCTACTTCCTGTTCGACCGGAGCTCCAAACTCACAGAA 2283
Query 2365 CAGGTTCTGATAAGAATGCGAT-TAATGATTAGTGAAAACACAAATGCGCTAGAATTGGT 2423
|||||||||| ||||||||||| | ||| |||||||||| ||| || | |||| |||
Sbjct 2284 CAGGTTCTGAAAAGAATGCGATCT-ATGGTTAGTGAAAATGTAAAAGCATTGGAATCGGT 2342
Query 2424 ACAAGACAGGGAGAGTGGTCGAAACTCATTGAATTTGATACAATGCATTATCTCTGTGAT 2483
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2343 TCAAGACAGGGAGAGTGGTCGAGACTCATTGAATTTGATACAATGCATTGTCTCTGTGAT 2402
Query 2484 CCTGCTGATGCACAATGACGTCAAAGTTAGGAAGATAATATCATCATTCAAGTCAGAGAT 2543
||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 2403 CCTGCTGATGCACAACGATGTCAAAGTTAGGAAGATAATATCATCATCCAAGTCAGAGAT 2462
Query 2544 CGATTTGATTCTGCAGAACG-TTATCACATTGCAGTCCTCACGAAGCACGAGCTTGACTG 2602
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2463 TGATTTGATTCTGCAGAACGTTTA-CACATTGCAGTCCTCACGAAGCACGAGCTTGACTG 2521
Query 2603 TAGAAGGAAAGCATATGATGAAAATTGCGGGAGAGCGACTTAGGATTGCATCCAAAAGCT 2662
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||
Sbjct 2522 TAGAAGGAAAGCATATGATGAAAATTGCAGCAGAGCGACTTAGCATTGCATCCAATAGCT 2581
Query 2663 TACTCGCGTAA 2673
||||||| |||
Sbjct 2582 TACTCGCATAA 2592
Score = 833 bits (451), Expect = 0.0
Identities = 678/785 (86%), Gaps = 26/785 (3%)
Strand=Plus/Plus
Query 6 TCGCTCCAAGGCTCCTGCAAAGAAGCAGCAAAAGAAAGGAATTGATTTCAAGAAAATTAA 65
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 6 TCGCTCCAAGGCTCCTGCAAGGAAGCAGCAAAAGAAAGGAATCGATTTCAAGAAAATCAA 65
Query 66 GAGAAAGCTCGGGAGAAAATTACCTCCACCGAATAATGCAACTAACACTGAGATTAAATC 125
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 66 GAGAAAGCTCGGGAGAAAATTACCTCCACCAAATAATGCAACTAACACAGAGATTAAATC 125
Query 126 CAAAGCAATTATACTTCCTGAGCAAAGTGTGGCTGCTGAAA-AGAGTGGCTTCGCTACAA 184
||||||||||||||||| ||||||||||||||| || |||| ||| ||||||||||||||
Sbjct 126 CAAAGCAATTATACTTCATGAGCAAAGTGTGGCAGCAGAAAGAGA-TGGCTTCGCTACAA 184
Query 185 GTAAGAAAGGCTTAACCTTGAAGGAGCTTCTGCAACA-AACTCGTCATCACAATGCTAAA 243
|||||||||| || |||||| |||||| | ||| |||| | |||| ||||||||||
Sbjct 185 GTAAGAAAGGTTTGACCTTGCTTGAGCTTAAG-AACCGAACTGGGCATCCCAATGCTAAA 243
Query 244 GTTCGCAAAGATGCATTATATGGTATCAAAGACCTTTTTAAGA-ATCATCCAGAAGAGCT 302
|||||||||||||||||| ||||||||||||| ||||| || | ||||||| | ||||||
Sbjct 244 GTTCGCAAAGATGCATTACATGGTATCAAAGATCTTTTAAA-ACATCATCCTGCAGAGCT 302
Query 303 GCAGTCACATAAATATGCTA-TCATACAGAAACTCAGGGAACGCATTAGTGATGATGATA 361
|| |||| |||||||||||| | | ||| ||||| || |||| ||||| |||||||||||
Sbjct 303 GCTGTCAAATAAATATGCTACT-ACACATAAACTTAGAGAACTCATTACTGATGATGATA 361
Query 362 A-TCTAGTGAGAGATGCTTTTTAT-CAACTATTTAAAACTGACATCTTTCCTGCTTGTAA 419
| | |||| ||||| | ||||||| || ||||| | ||| ||||||| |||||||||
Sbjct 362 AGT-TAGTAAGAGACGATTTTTATACA-CTATTGA---CTGGGATCTTTCTTGCTTGTAA 416
Query 420 AGAGGATA--ACCA-GGGCCCTATGGTGTCACTTTTGATGCCATACATATTTAGCGCTAT 476
|||||||| | || ||| | |||||| ||| |||||||||||||||||||| ||||||
Sbjct 417 AGAGGATATTAACAAGGGTCTTATGGTTTCAAGTTTGATGCCATACATATTTACCGCTAT 476
Query 477 GGCTA-GTTCAGT-TATTGATGTTCGTTTGATGGCTTTCAAATTTTTCCACCTTGTTGTG 534
| ||| || || | |||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 477 GACTAAGT-CA-TCTATTGAAGTTCGTTTGATGGCTTTCAAATTTTTCCGCCTTGTTTTG 534
Query 535 GAGTACTACCCGCCTACCTTTTCCTTGGATGCTGAAAAGATTCTCGAAAACTACAAAGAT 594
|||| ||| |||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 535 GAGTTTTACTCGCCTACCTTCTCCTTATATGCTGAAAAGATTCTCGAAAACTACAAGGAT 594
Query 595 ATTATACAGAAAAATCATTTTTATGTGCAAGATAAAAACAAGCTAAAGGTAGCTCTTTCT 654
|||| || || || ||||||||| | ||||||||||| ||||| ||||||| ||||| |
Sbjct 595 GTTATTCATAATAACCATTTTTATATACAAGATAAAAAGAAGCTTAAGGTAGTTCTTT-T 653
Query 655 GGG-TTGGCACATTGCCTCTCGCTGTTGCCATGTGATGAAAGCGACACCGAATCACaa-a 712
||| |||||| ||||| | |||||||||||||||||| | ||||||| |||||| || |
Sbjct 654 GGGGTTGGCAGATTGCTTGTCGCTGTTGCCATGTGATCAGAGCGACAATGAATCA-AAGA 712
Query 713 aaaaGGGACCTTCACAGAATGAAACACTACTCGCCTATGAGCAAGATGCTGCAAAAGATT 772
||||||||| || |||| ||||||| |||||||||| ||||||||||||||| ||||| |
Sbjct 713 AAAAGGGACTTTTACAGTATGAAACGCTACTCGCCTGTGAGCAAGATGCTGCGAAAGAAT 772
Query 773 GTGTT 777
|||||
Sbjct 773 GTGTT 777
> AT4G04680.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: ARM repeat superfamily protein (TAIR:AT5G06350.1);
Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr4:2372266-2373327 FORWARD LENGTH=786
Length=786
Score = 440 bits (238), Expect = 3e-122
Identities = 317/355 (89%), Gaps = 6/355 (2%)
Strand=Plus/Plus
Query 129 AGCAATTATACTTCCTGAGCAAAGTGTGGCTGCTGAAAAGAGTGGCTTCGCTACAAGTAA 188
|||||| |||||| ||||||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 72 AGCAATGATACTTGCTGAGCAAAATGTGGCAGCTGAAAAGAGTGGCTTAGCTACAAGTAA 131
Query 189 GAAAGGCTTAACCTTGAAGGAGCTTCTGCAACAAAC-TCGTCATCACAATGCTAAAGTTC 247
||||||||| ||||||||||| ||||||| |||||| || ||| |||||| ||| |||
Sbjct 132 GAAAGGCTTGACCTTGAAGGATCTTCTGCCACAAACTTC-ACATTGCAATGCCAAACTTC 190
Query 248 GCAAAGATGCATTATATGGTATCAAAGACCTTTTTAAGAATCATCCAGAAGAGCTGCAGT 307
|||||||||||||| ||||| ||||||||||||| ||||| ||||||| |||||||||||
Sbjct 191 GCAAAGATGCATTAAATGGTCTCAAAGACCTTTTGAAGAACCATCCAGCAGAGCTGCAGT 250
Query 308 CACATAAATATGCTATCATACAGAAACTCAGGGAACGCATTAGTG-ATGATGATAATCTA 366
||||||||||||||||||| |||||||| |||||||| |||| || ||||||||| ||||
Sbjct 251 CACATAAATATGCTATCATTCAGAAACTTAGGGAACGAATTA-TGGATGATGATAGTCTA 309
Query 367 GTGAGAGATGCTTTTTATCAACTATTTAAAACTGACATCTTTCCTGCTTGTAAAGAGGAT 426
|||||||||||| |||||||||||||| ||| || ||| |||||||||||||| | |||
Sbjct 310 GTGAGAGATGCTCTTTATCAACTATTTGAAAGTGTGATCCTTCCTGCTTGTAAAAATGAT 369
Query 427 AACCAGGGCCCTATGGTGTCACTTTTGATGCCATACATAT-TTAGCGCTATGGCT 480
|||||| ||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 370 AACCAGAGCCCTATGGTGTCACTTTTAATGCCATACATATCTT-GCGCTATGGCT 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139112932939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5