BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487446
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06370.1 | Symbols: | NC domain-containing protein-related ... 1271 0.0
> AT5G06370.1 | Symbols: | NC domain-containing protein-related
| chr5:1947139-1948612 REVERSE LENGTH=1120
Length=1120
Score = 1271 bits (688), Expect = 0.0
Identities = 858/936 (92%), Gaps = 27/936 (3%)
Strand=Plus/Plus
Query 43 GAAAACGGAAAGCCATTTTTAGCATAATAA-TCAT-TCTTCTT-CCTTGAAGATAAGTTT 99
|||||||| ||||||||| ||||| || || || | |||| || |||||||||||||||
Sbjct 72 GAAAACGG-AAGCCATTTCTAGCAAAACAATTC-TCTCTT-TTGTCTTGAAGATAAGTTT 128
Query 100 CACGAAAAGCTCGGCTTCGTCTCTTCTACGACG-T--------T--------ATGGGTCT 142
||| ||||| || |||||| ||||||||||||| | | ||||||||
Sbjct 129 CACAAAAAGGTCTGCTTCGCCTCTTCTACGACGTTGCAGAAACTAAGAAGAGATGGGTCT 188
Query 143 TCTCTCCAACAGAATCGATAGATCGAGTTTGAAACCTGGAGATCATATCTACTCCTGGAG 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCTCTCCAACAGAATCGATAGATCGAGTTTGAAACCTGGAGATCATATCTACTCCTGGAG 248
Query 203 AACTGCTTACATATATGCCCACCACGGAATCTTTGTTGGAGATGATAGAGTCATCCATTT 262
||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 249 GACTGCTTACATCTATGCCCATCACGGCATCTATGTTGGAGATGATAGAGTCATCCATTT 308
Query 263 CACCAGACGAGGCCAAGAAGTTGGAACCGGGACTGTTCTAGATCTTATACTTGTGAGCTC 322
||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 309 CACTAGACGAGGCCAAGAAGTTGGAACCGGGACTGTTCTAGATCTCATACTAGTCAGCTC 368
Query 323 AGGTCCATCCCGAAACCACACGCATTGTCCAACGTGTGTTCCACCGAACGAAGGTCACGG 382
||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||
Sbjct 369 AGGTCCATCCCGAAACCACACCCACTGTCCAACCTGTGTTCCACCTAACGAAGGTCACGG 428
Query 383 TGTTGTTTCCTCATGCCTTAACTGTTTCCTAGCCGGTGGTGTCTTGTACCGGTTTGAGTA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TGTTGTTTCCTCATGCCTTAACTGTTTCCTAGCCGGTGGTGTCTTGTACCGGTTTGAGTA 488
Query 443 TTCGGTCAACGCTGCTCACTTCCTTGCCAAAGCCAGAGGAGGAACCTGTACACTCGCTGT 502
|| |||||||||||||||||||| | |||||||||||||||||| || |||||||||||
Sbjct 489 CTCAGTCAACGCTGCTCACTTCCTCGTCAAAGCCAGAGGAGGAACTTGCACACTCGCTGT 548
Query 503 TGCTGATCCGAATGAGATTGTTGTTCACCGGGCTAAACACCTCCTTCAAAACGGATTTGG 562
||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 549 CGCTGACCCTAATGAGATTGTTGTTCACCGGGCCAAACACCTCCTTCAAAACGGATTTGG 608
Query 563 ATGCTACGACGTTTTCAAGAATAACTGTGAGGATTTTGCTATATATTGCAAAACCGGATT 622
||| || |||||||||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 609 ATGTTATGACGTTTTCAAGAACAACTGTGAGGATTTCGCTATATATTGCAAAACCGCATT 668
Query 623 GCTTGTTCTTGAGGGAAGGACAATGGGACAGAGCGGTCAGGCAGTGTCGATTATAGGTGG 682
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 669 GCTGGTTCTTGAGGGAAGGACAATGGGACAGAGCGGTCAGGCGGTTTCGATTATAGGTGG 728
Query 683 ACCAATTGCTGCAGTTTTGTCCACGCCGATGCGGCTTGTGACTACAAACGTTTATGGAAT 742
|| |||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 729 GCCGATTGCTGCGGTTTTGTCCACGCCAATGCGGCTTCTGACTACAAACGTGTATGGGAT 788
Query 743 GGCTGCTACTGCGATTGGTGTGTATTGTGCGAGTAGATACGCTACTGATATTGGAATGAG 802
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 789 GGCTGCTACAGCGATTGGTGTGTATTGTGCGAGTAGATACGCTACTGATATCGGAATGAG 848
Query 803 AGCTGACGTCGCGAAAGTTGAAGCAGAGGACCTCACAAGAAGGCTGTCTTCAGGACTTTT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGCTGACGTCGCGAAAGTTGAAGCAGAGGACCTCACAAGAAGGCTGTCTTCAGGACTTTT 908
Query 863 CCAAGTACTTGAACCTCCATTGGCAGCCATAGCTTTACCAAGCACGAGTTAATAGATAAG 922
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 909 CCAAGTACTTGATCCTCCATTGGCAGCCATAGCTTTACCAAGCACGAGTT----GATAAG 964
Query 923 CTTAAGCTTCACCAGCGTATCTCACTGTTGTATTTT 958
|||||||||||||||| |||| ||||||||||||||
Sbjct 965 CTTAAGCTTCACCAGCTTATCCCACTGTTGTATTTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5