BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487450 Length=945 Score E Sequences producing significant alignments: (Bits) Value AT5G06410.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1260 0.0 > AT5G06410.1 | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:1959536-1961158 REVERSE LENGTH=968 Length=968 Score = 1260 bits (682), Expect = 0.0 Identities = 870/954 (91%), Gaps = 39/954 (4%) Strand=Plus/Plus Query 1 ATGGTGGCTTCCATGACCACTCTTATTAGACGAACCTATCCTTTAACT-TCTCGGTGTAA 59 |||||||||||||| |||| ||||||||||| |||||||||| |||| | | |||||| Sbjct 45 ATGGTGGCTTCCATCTCCACCCTTATTAGACGGACCTATCCTTCAACTAAC-CAGTGTAA 103 Query 60 TTCACTCGCGACAATTGCTGCGATTCAATCACAAACCCAATTGCCTCGCGAATCTCTGCA 119 |||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 104 TTCACTCGCG---A------CGATTCAATCACAAACCCAATTGCCTCGCGAATCTCTGCA 154 Query 120 ACATCATTCTTCAGCTGAGGGACGACTCCGATTTTCCGGGAGAGTTTTCTGCTCGGAAAC 179 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 155 ACATCATTCTTCAGCTGAGGGACGACTCCGATTCTCCGGGAGAGTTTTCTGCTCGGAATC 214 Query 180 TGGCGCCGAGGAGAGAAGAAACTCCGGCTGCTGGAACTGTGGCGAAAAAGCTGCCTTTTT 239 ||||||| | | | ||||||||||||||||| |||||||||||||| Sbjct 215 TGGCGCC-------G--G--A-------TGCTGGAACTGTGGCGAGAAAGCTGCCTTTTT 256 Query 240 GTTCTGTAACTCATGCCGTAGCATTCAACCTGTTGATGATTCCGTCGACTATTTTCAGAT 299 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 257 GTTCTGTAACTCATGCCGTAGCATTCAACCTGTTGATGACTCCGTCGACTATTTTCAGAT 316 Query 300 TTTTGGCCTGGAGAAGAAGTATGAGATAGATCCTGGAAGCCTTGAAGGCAAGTACAAAGA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TTTTGGCCTGGAGAAGAAGTATGAGATAGATCCTGGAAGCCTTGAAGGCAAGTACAAAGA 376 Query 360 TTGGCAAAAGAAGTTACATCCTGATTTAGTTCACAACAAATCCAAGAAAGAACGGGATTA 419 ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| || || Sbjct 377 TTGGCAAAAGAAGCTACATCCTGATTTAGTTCATAACAAATCTAAGAAAGAACGAGACTA 436 Query 420 CGCAGCCGAGCAGTCTGCGAAGGTGACTGAAGCATGCCGGACATTGACCAAGCGGCTGTC 479 |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| Sbjct 437 CGCAGCCGAGCAGTCTGCAAAGGTGACTGAAGCGTGCCGGACATTAACAAAGCGGCTGTC 496 Query 480 GAGAGCAATGTATATTATGAAGCTGAATGGCGTAAATGTCAATGAAGAAGAAACAATAAC 539 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 497 GAGAGCAATGTATATCATGAAGCTGAATGGTGTAAATGTCAATGAAGAAGAAACAATAAC 556 Query 540 TGACCCAACTTTGTTAATGGAAATTATGGAACTCAGAGAGACAATATCAGAAGCAGATGA 599 |||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||| Sbjct 557 AGACCCAACATTGTTAATGGAGATTATGGAACTCAGAGAGGCCATATCAGAAGCAGATGA 616 Query 600 TTCAACAGCGTTAAACCAGATCCGATCCCAGGTACAAGAGAAACTGAAGCAATGGTCTGA 659 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 617 TTCAACATCGTTAAACCAGATCCGATCCCAGGTACAAGAGAAACTAAAGCAATGGTCTGA 676 Query 660 CTCTTTTGTCGAAGCGTTTGAAAGCCAGAGGTTTGATGATGCTGTAAAATGCATACAGAG 719 |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 677 CTCTTTCGTCGAAGCGTTTGAAAGCCAGAAGTTTGATGATGCTGTAAAATGTATACAGAG 736 Query 720 AATGACTTATTACGAGCGAGCCTGTGAAGAAATTGTGAAGAAGCTATGAGGCAAGTAGTC 779 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| Sbjct 737 AATGACTTATTACGAGCGAGCCTGCGAAGAAATTTTGAAGAAGCTATGAGGCAATTAGTC 796 Query 780 CTCCCATAAAAACGAACACGttttttttttATGTTTGCCTTATAGCTTTACCGGTCACAT 839 ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 797 CTCCCTTAAAAACGAACACGTTTTTTTTT-ATGTTTGCCTTATAGCTTTACGGGTCACAT 855 Query 840 TTGAAGGGAACACATCATGTCTCATAACTTAA-GTATCTTAGCTTCATGTTTTAGTTAAG 898 ||||| |||||| |||||| ||||||||| || ||||||||||| |||||||||||| || Sbjct 856 TTGAAAGGAACAGATCATGGCTCATAACTGAAAGTATCTTAGCTACATGTTTTAGTTTAG 915 Query 899 T-ATCATAGAACAGAGGGCT-T-T----GTAATAAGAGTATTTACAGATTTCGT 945 | || |||||||||||| || | | |||||||||| ||||||||||||||| Sbjct 916 TTAT-ATAGAACAGAGGACTCTGTATTTGTAATAAGAGGATTTACAGATTTCGT 968 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46215415240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5