BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487450
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06410.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1260 0.0
> AT5G06410.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr5:1959536-1961158 REVERSE LENGTH=968
Length=968
Score = 1260 bits (682), Expect = 0.0
Identities = 870/954 (91%), Gaps = 39/954 (4%)
Strand=Plus/Plus
Query 1 ATGGTGGCTTCCATGACCACTCTTATTAGACGAACCTATCCTTTAACT-TCTCGGTGTAA 59
|||||||||||||| |||| ||||||||||| |||||||||| |||| | | ||||||
Sbjct 45 ATGGTGGCTTCCATCTCCACCCTTATTAGACGGACCTATCCTTCAACTAAC-CAGTGTAA 103
Query 60 TTCACTCGCGACAATTGCTGCGATTCAATCACAAACCCAATTGCCTCGCGAATCTCTGCA 119
|||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 104 TTCACTCGCG---A------CGATTCAATCACAAACCCAATTGCCTCGCGAATCTCTGCA 154
Query 120 ACATCATTCTTCAGCTGAGGGACGACTCCGATTTTCCGGGAGAGTTTTCTGCTCGGAAAC 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 155 ACATCATTCTTCAGCTGAGGGACGACTCCGATTCTCCGGGAGAGTTTTCTGCTCGGAATC 214
Query 180 TGGCGCCGAGGAGAGAAGAAACTCCGGCTGCTGGAACTGTGGCGAAAAAGCTGCCTTTTT 239
||||||| | | | ||||||||||||||||| ||||||||||||||
Sbjct 215 TGGCGCC-------G--G--A-------TGCTGGAACTGTGGCGAGAAAGCTGCCTTTTT 256
Query 240 GTTCTGTAACTCATGCCGTAGCATTCAACCTGTTGATGATTCCGTCGACTATTTTCAGAT 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 257 GTTCTGTAACTCATGCCGTAGCATTCAACCTGTTGATGACTCCGTCGACTATTTTCAGAT 316
Query 300 TTTTGGCCTGGAGAAGAAGTATGAGATAGATCCTGGAAGCCTTGAAGGCAAGTACAAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTTTGGCCTGGAGAAGAAGTATGAGATAGATCCTGGAAGCCTTGAAGGCAAGTACAAAGA 376
Query 360 TTGGCAAAAGAAGTTACATCCTGATTTAGTTCACAACAAATCCAAGAAAGAACGGGATTA 419
||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct 377 TTGGCAAAAGAAGCTACATCCTGATTTAGTTCATAACAAATCTAAGAAAGAACGAGACTA 436
Query 420 CGCAGCCGAGCAGTCTGCGAAGGTGACTGAAGCATGCCGGACATTGACCAAGCGGCTGTC 479
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct 437 CGCAGCCGAGCAGTCTGCAAAGGTGACTGAAGCGTGCCGGACATTAACAAAGCGGCTGTC 496
Query 480 GAGAGCAATGTATATTATGAAGCTGAATGGCGTAAATGTCAATGAAGAAGAAACAATAAC 539
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 497 GAGAGCAATGTATATCATGAAGCTGAATGGTGTAAATGTCAATGAAGAAGAAACAATAAC 556
Query 540 TGACCCAACTTTGTTAATGGAAATTATGGAACTCAGAGAGACAATATCAGAAGCAGATGA 599
|||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 557 AGACCCAACATTGTTAATGGAGATTATGGAACTCAGAGAGGCCATATCAGAAGCAGATGA 616
Query 600 TTCAACAGCGTTAAACCAGATCCGATCCCAGGTACAAGAGAAACTGAAGCAATGGTCTGA 659
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 617 TTCAACATCGTTAAACCAGATCCGATCCCAGGTACAAGAGAAACTAAAGCAATGGTCTGA 676
Query 660 CTCTTTTGTCGAAGCGTTTGAAAGCCAGAGGTTTGATGATGCTGTAAAATGCATACAGAG 719
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 677 CTCTTTCGTCGAAGCGTTTGAAAGCCAGAAGTTTGATGATGCTGTAAAATGTATACAGAG 736
Query 720 AATGACTTATTACGAGCGAGCCTGTGAAGAAATTGTGAAGAAGCTATGAGGCAAGTAGTC 779
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 737 AATGACTTATTACGAGCGAGCCTGCGAAGAAATTTTGAAGAAGCTATGAGGCAATTAGTC 796
Query 780 CTCCCATAAAAACGAACACGttttttttttATGTTTGCCTTATAGCTTTACCGGTCACAT 839
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 797 CTCCCTTAAAAACGAACACGTTTTTTTTT-ATGTTTGCCTTATAGCTTTACGGGTCACAT 855
Query 840 TTGAAGGGAACACATCATGTCTCATAACTTAA-GTATCTTAGCTTCATGTTTTAGTTAAG 898
||||| |||||| |||||| ||||||||| || ||||||||||| |||||||||||| ||
Sbjct 856 TTGAAAGGAACAGATCATGGCTCATAACTGAAAGTATCTTAGCTACATGTTTTAGTTTAG 915
Query 899 T-ATCATAGAACAGAGGGCT-T-T----GTAATAAGAGTATTTACAGATTTCGT 945
| || |||||||||||| || | | |||||||||| |||||||||||||||
Sbjct 916 TTAT-ATAGAACAGAGGACTCTGTATTTGTAATAAGAGGATTTACAGATTTCGT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5