BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487451
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06440.4 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2215 0.0
> AT5G06440.4 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: Polyketide cyclase/dehydrase and lipid transport superfamily
protein (TAIR:AT3G11720.3). | chr5:1964601-1967335
REVERSE LENGTH=1893
Length=1893
Score = 2215 bits (1199), Expect = 0.0
Identities = 1404/1496 (94%), Gaps = 41/1496 (3%)
Strand=Plus/Plus
Query 123 AAGGT-GAGAGCTTGAGA-TATGCAGAAGAAACGAGAGATCTGTGAG-TATAGAGAAAAA 179
||||| || ||||||||| |||||||||||||||||||||||||| | |||||||| |||
Sbjct 374 AAGGTGGA-AGCTTGAGATTATGCAGAAGAAACGAGAGATCTGTG-GTTATAGAGACAAA 431
Query 180 TTAGACAAGACCTTGTCTTCTCCTGAACTCACTAATCACGAGACTCTCAAATCTCTTCTC 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTAGACAAGACCTTATCTTCTCCTGAACTCACTAATCACGAGACTCTCAAATCTCTTCTC 491
Query 240 AGAAACCAGCTTCAAGAGTGTGATGAGAATATATTGGATAAAAGAACAGATGATGTATCC 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AGAAACCAGCTTGAAGAGTGTGATGAGAATATATTGGATAAAAGAACAGATGATGTATCC 551
Query 300 AAGTTACTTAGCAAGCTTAGGAGTGTTTCAATGACGGATCATCAAGTTTCTAAATTAACC 359
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 552 AAGTTACTTAGCAAGCTTAGGAGTGTTTCCATGACTGATCATCAAGTTTCTAAATTAACC 611
Query 360 AACGATGGTGATTGGAAATTGAAACATGATCTTGAAGATTGCCGTGTTATGTACCGTGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AACGATGGTGATTGGAAATTGAAACATGATCTTGAAGATTGCCGTGTTATGTACCGTGAA 671
Query 420 GGGCTCGATGGAAGTCCTTTTCACACGTTGCTCGTTGAAGGTTACATGGATGGGCCTATC 479
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 672 GGACTCGATGGAAGTCCTTTTCACACATTGCTCGTTGAAGGTTACATGGATGGTCCTATC 731
Query 480 CACGAATGTTTATGCGTATCGTGGGAATCAACTCTCTACAAGAAATGGTGGCCACAGTAT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 732 CACGAATGTTTATGCGTATCGTGGGAATCAACTCTCTACAAGAAATGGTGGCCACAATAT 791
Query 540 GCATTTCCTCCATTCAGGATCTTAAAAAGCACATGCTTGCAAAAGGTCGGGGTCGGTGAA 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GCGTTTCCTCCATTCAGGATCTTAAAAAGCACATGCTTGCAAAAGGTCGGGGTCGGTGAA 851
Query 600 CAAATTTGTTTAGCGA-G---G-----A-TG------A--A-G--GTACCATGGCCATTG 638
|||||||||||||| | | | | || | | | |||||||||||||||
Sbjct 852 CAAATTTGTTTAGCAAGGTTTGTCCATATTGAAAACAAGGATGAAGTACCATGGCCATTG 911
Query 639 ACGGAAAGAGAGATGATTCTGCACTATTTCTTTTTTGAATACTTTAAAGATGGCTTAATC 698
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 912 ACGGAAAGAGAGATGATTCTGCACTATTTCTCTTTTGAATACTTTAAAGATGGCTTAGTC 971
Query 699 GTCATCCTTCTGAACACGATCTCTGATTTAGATAGCATTGGAGTTTCCTCTAAGGACATC 758
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 972 GTCATCCTTCTGAACACGATCTCTGATTTAAATAGCATTGGAGTTTCCTCTACGGACATC 1031
Query 759 GTCATACCTGAATCACCGGATGCAGTGAGGATGGATCTTGTAGGCGGATTTGTTTTACAA 818
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1032 ATCATACCTGAATCACCGGATGCAGTGAGGATGGATCTCGTAGGCGGATTTGTTTTACAA 1091
Query 819 AAGGTTACTCCACAGAGGAGTTACTTCAGAACGATAGGGGATATGGATATAAAGCTGGAC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AAGGTTACTCCACAGAGGAGTTACTTCAGAACGATAGGGGATATGGATATAAAGCTGGAC 1151
Query 879 TTGATACCACCATCTCTTATGAATTTTATATCGAGGCAGCTGATCGGCAACGGTTTCAGA 938
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1152 TTGATGCCACCATCTCTTATGAATTTTATATCTAGGCAGCTGATCGGCAACGGTTTCAGA 1211
Query 939 CTATATAAAAAGTCAGTTGCTTCCGTAGCTAAATTTGATGAAGATTACAGTAGAGCTTTG 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CTATATAAAAAGTCAGTTGCTTCCGTAGCTAAATTTGATGAAGATTACAGTAGAGCTTTA 1271
Query 999 ACTGATCCGTTGTACACTAAGATACGTCAAGCCCTATATTCAACTGATGAGGCAATTGAG 1058
|||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||| | |||
Sbjct 1272 ACTGATCCTTTGTATACTAAGATACGTCGAGCTCTATATTCAACTGATGAAGCAGTCGAG 1331
Query 1059 GAAGAACCAAAGTTGGAAACCAATGAAGTGAATGGCGATTACCT-GCCAAAGCACGAACA 1117
||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||
Sbjct 1332 GAAGAACCAAAGTTGGAAACCAATGAAGTAAATGGCG-TTACTTTGCCAAAGCACGAACA 1390
Query 1118 CGAGAATAATGGAGATACTAGTGTAAATAAACTTGTCCATTGTAGAAGAACTGTTCCCGA 1177
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1391 CGAGAATAATGGAGATGCTAGTGTAAATAAACCTGTCCATTGCAGAAGAACTGTTCCCGA 1450
Query 1178 GATTGAAGAAGAAGAAGTTGAAGATTCTGAGGAAAGCGTTT-TCTCAGAGGATGGAAATG 1236
|||||| |||||||||| || | |||||||||| |||| | ||||||||||||||||
Sbjct 1451 GATTGAGGAAGAAGAAG---AA--T-CTGAGGAAAGTGTTTAT-TCAGAGGATGGAAATG 1503
Query 1237 AAATTGCCAAGACTCATGTGGATATCAGAAGACGGTTTTGCGTCAGTCCAGAGGTAGAAC 1296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1504 AAATTGCCAAGACTCATGTGGATATGAGAAGACGGTTTTGCGTCAGTCCAGAGGTAGAAC 1563
Query 1297 AAGCTTTAGGGACTCTAGATAGAGTAATATACATGGTTAGAAATATAACGCCAGTCCCAG 1356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1564 AAGCTTTAGGGACTCTAGATAGAGTAATATTCATGGTTAGAAATATAACGCCAGTCCCAG 1623
Query 1357 AAACCAAGGAATTGTCGCCAAATAGAGCAGAGGATCAGGCAAAGCAAGTGAGTGTATTGG 1416
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1624 AAACTGAGGAATTGTCGCCAAATAGAGCAGATGATCAGGCAAAACAAGTGAGTGTATTAG 1683
Query 1417 AGAACATTGAAAGTGTTCCTCaaaaaaaaGAGTCA--A-GCGATTTTAGTCaagaagaga 1473
|||||||||||||||||||||||| | |||||||| | ||||||| ||| |||||||||
Sbjct 1684 AGAACATTGAAAGTGTTCCTCAAACACAAGAGTCATCAAGCGATTTCAGTGAAGAAGAGA 1743
Query 1474 agagagaagagGATACAGGACAAAAGCAGGGCATGTTAAACAAAGGTAAGAACTTGAGCT 1533
|||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1744 AGAGAGAAGAGGATACGGGACAAAATCAGGGCATGTTAAACAAAGGTAAGAACTCGAGCT 1803
Query 1534 TGCAGAGGAATCGTAAAGC-CGGCTGCTTTGCTTTCAGGTCTTGGCTCTGAAGGAA 1588
||||||| || |||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1804 TGCAGAGAAAACGTAAAGCTCG-CTGCTTTGCTTTCAGGTCTTGGCTTTGAAGGAA 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5