BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487454
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06450.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1123 0.0
> AT5G06450.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:1967723-1969223 REVERSE
LENGTH=939
Length=939
Score = 1123 bits (608), Expect = 0.0
Identities = 731/786 (93%), Gaps = 25/786 (3%)
Strand=Plus/Plus
Query 7 TTCATCACATGGCCTCCTTTGATGGGCCAAAGTTCAAGATGACTGATGGCTCTTATGTTC 66
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 165 TTCATCACATGGCCTCCTTTGATGGGCCAAAGTTCAAGATGACTGATGGCTCCTATGTTC 224
Query 67 AGACCAAGACCATTGATGTTGGATCATCAACAGATATCTCTCCATACCTTTCACTTATAA 126
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AGACTAAGACCATTGATGTTGGATCATCAACAGATATCTCTCCATACCTTTCACTTATAA 284
Query 127 GAGAAGATTCTATCTTGAATGGAAACCGAGCTGTGATCTTCGATGTGTATTGGGATGTCG 186
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 285 GAGAAGATTCTATCTTGAATGGAAACCGAGCGGTGATCTTCGATGTGTACTGGGATGTGG 344
Query 187 GATTTCCCGAAACTGGAACCAAAACCAAAACGTCAGGGTGGAGTCTGTCATCGGTGAAGC 246
| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GGTTTCCTGAAACTGAAACCAAAACCAAAACGTCAGGGTGGAGTCTGTCATCGGTGAAGC 404
Query 247 TGAGCACGAGAAATCT-ATGTCTCTTCCTTCGACTTCCTAAACCTTTTCATGACAATCTC 305
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGAGCACTAGAAA-CTTATGTCTCTTCCTTCGACTTCCTAAACCTTTTCATGACAATCTC 463
Query 306 AAGGATCTGTACCGTTTCTTTGCTTCCAAGTTTGTTACTTTTGTTGGAGTGCAGATCGAG 365
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 464 AAGGATCTGTACCGTTTCTTTGCTTCCAAGTTTGTCACTTTTGTTGGAGTGCAGATCGAG 523
Query 366 GAAGACCTGAACTTGCTTAGTGAAAACCACGGTCTTGTGATAAGAAACGCGATTAACATT 425
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 524 GAAGACCTGGACTTGCTTAGAGAAAACCACGGTCTCGTGATAAGAAACGCGATTAACGTT 583
Query 426 GGGAAATTGGCTGCGAAAGCTCGTGGAACTCTGGTGCTTGAGTTTCTTGGGACAAGAGAA 485
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GGGAAATTGGCTGCGGAAGCTCGTGGAACTCTGGTGCTTGAGTTTCTTGGGACAAGAGAA 643
Query 486 TTGGCGCACAGAGTTTTGTGGTCTGATTTGGGTCAGCTGGATTCGATTGAGGCCAAATGG 545
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 644 TTAGCGCACAGAGTATTGTGGTCTGATTTGGGCCAGCTGGATTCGATTGAGGCCAAATGG 703
Query 546 GAGAAGGCAGGGTC-TGAAGAACAACTTGAGGCTGCAGCCATTGAAGGGTGGCTCATCTT 604
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 704 GAGAAGGCAGG-TCCTGAAGAACAACTTGAGGCTGCAGCCATTGAAGGGTGGCTCATCGT 762
Query 605 CAATGTTTGGGATCAATTATCCGAGCCCGAGGAGTGATTTACTACTTATCTTTGTGATTG 664
|||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||
Sbjct 763 CAATGTTTGGGATCAATTGTCCGAT---GAG---TGATTTACTACTTATCTCTGTGATTG 816
Query 665 CTTCttttttttGAAA-TGACTT--G-TG-A--T-A-TT-GTGAC-TGAATCTAAGTGAT 713
|||||||||||| | ||| | || | | | || || || |||||| |||||||
Sbjct 817 CTTCTTTTTTTTTTTGGTT-CTTTTGATGGAAATGACTTTGT-ACCTGAATCAAAGTGAT 874
Query 714 CCTTTGTATGTTGTTTGATGTGATCA-TCAACAATCACTAAACAAAAAGTGAACAGTTTC 772
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 875 CCTTTGTAAGTTGTTTGATGTGA-CAATCAACAATCACTAAACAAAAAGTGAACAGTTTC 933
Query 773 GGATTC 778
|||||
Sbjct 934 AGATTC 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5