BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487456
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06470.1 | Symbols: | Glutaredoxin family protein | chr5:19... 1186 0.0
> AT5G06470.1 | Symbols: | Glutaredoxin family protein | chr5:1974659-1975378
REVERSE LENGTH=720
Length=720
Score = 1186 bits (642), Expect = 0.0
Identities = 694/720 (96%), Gaps = 0/720 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGGGAATGAAGGAAAGATTGGTGAAGAAAATCAAACTCATCACCACTGTCAAGACG 60
Query 61 TTGAAGCAAGGCTTAGCTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGA 120
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAAGCAAAGCTTAACTCTTCATAAGAGTACCATTGATCGCACAATCCATCATCTAAGA 120
Query 121 GACGAAATAGTCGCTGAATCTAGTCAAATCAAAGGTTGTGTTACACCAACACTACTAGAG 180
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 121 GACGAAATAGTCGCTGAATCTGGTCAAAGCAAAGGTTGTGTTACACCAACACTACTAGAG 180
Query 181 CTTGAAGATGCAGAGGAACAGAATCTTGAAGAAGAAAGAGGGATTCTTTTGGAGTTTAAA 240
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 181 CTTGAGGATGCAGAGGAACATAATCTTGAAGAAGAAAGAGGGATTCTTCTGGAGTTTAAA 240
Query 241 GAGAATTGCCCACCCGGGGGAGAAGATTCGGTTGTTTTCTACACGACGGGCCTGCGAGGT 300
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 241 GAGAATTGCCCACCCGGAGGAGAAGATTCGGTTGTATTCTACACGACGGGCCTGCGAAGT 300
Query 301 GTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGAGGAAAACATTTGAAGCTTGCAGAAGAGTGAGATTCTTGTTGGAGAATCACCAGGTG 360
Query 361 ATGTATAGAGAGAGAGATGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGTATAGAGAGAGAGACGTTTCCATGGATTCAGAGTTTAGAGAAGAGATGTGGAGGTTG 420
Query 421 CTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGGTGGGAAAGTTACCTCTCCGAGGCTGTTCATTAGAGGTAGGTACATTGGTGGAGCA 480
Query 481 GAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTGCTAGAAGGAATCTCG 540
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 481 GAAGAAGTTGTGGCATTGAACGAGAACGGGAAGCTGAAGAAGCTACTACAAGGAATCTCA 540
Query 541 CAGGTTGATTCGCCTTGCGAATCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGC 600
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAGGTTGATTCACCTTGCGAGTCTTGCGAGAACGAAAGGTTTTTGATATGTTCTAGCTGC 600
Query 601 AATGGGAGCTCAAAATTGCTTGTAGATCATCACGATGAGGAGACAAGTAATGATAATTTG 660
||||| ||| ||| |||||||| ||| ||||||||||| |||| |||||||||||| ||
Sbjct 601 AATGGAAGCACAAGATTGCTTGCAGAGCATCACGATGAAGAGAGTAGTAATGATAATATG 660
Query 661 TGGACGAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGACAAGATGCAGAGAATGTAATGAGAATGGACTTGTGAAATGTCCTCTTTGTACGTAG 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5