BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487463
Length=2580
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06530.2 | Symbols: | ABC-2 type transporter family protein... 4008 0.0
> AT5G06530.2 | Symbols: | ABC-2 type transporter family protein
| chr5:1989747-1994824 REVERSE LENGTH=2788
Length=2788
Score = 4008 bits (2170), Expect = 0.0
Identities = 2380/2482 (96%), Gaps = 11/2482 (0%)
Strand=Plus/Plus
Query 100 AGTTTTAGGAAACGTCATAATGTCAATGGAAAAGCCACCGTTGGCCTCCGGTTTAGCTCG 159
|||||| | ||| |||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 201 AGTTTTTGAAAAGGTCAAAATGTCAATGGAGAAGCCACCTTTGGCCTCCGGTTTAGCTCG 260
Query 160 AACACGATCGGAGCAGCTATATGAGACGGTGGCAGCAGCCATCAGGTCACCTCACGGCTC 219
|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 261 AACACGATCGGAGCAGCTATATGAGACGGTTGCAGCAGACATAAGGTCACCTCACGGCTC 320
Query 220 CATGGACGCTAATGGTGTGCCTGCGACGGCTCCAGCAGCCGTTGGAGGAGGAGGGACCTT 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 321 CATGGACGCTAATGGTGTGCCTGCGACGGCTCCAGCAGCCGTTGGAGGAGGAGGAACGTT 380
Query 280 ATCGAGGAAATCAAGCCGGAGGCTGATGATGGGGGCT-TCTCCGGGGAGGAGTGGCGGAG 338
||||||||||||||||||||| | |||| |||| | ||||||||||||||| |||| |
Sbjct 381 GTCGAGGAAATCAAGCCGGAGG-T--TGAT-GGGGATGTCTCCGGGGAGGAGTAGCGGCG 436
Query 339 CCGGAACGCATATAAGGAAGTCTAGGAGCGCTCAGCTTAAGCTCGAGCTAGAAGAAGTGA 398
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 CCGGAACACACATAAGGAAGTCTAGGAGCGCTCAGCTTAAGCTCGAGCTAGAGGAAGTGA 496
Query 399 GCAGTGGCGCTGCTCTGAGTCGTGCATCGAGCGCGTCGCTCGGGCTTTCCTTTTCCTTCA 458
| || ||||| ||| |||| ||||| || ||||| |||||||| ||||| ||||||||||
Sbjct 497 GTAGCGGCGCAGCTTTGAGCCGTGCGTCTAGCGCATCGCTCGGTCTTTCATTTTCCTTCA 556
Query 459 CCGGGTTTGCTATGCCGCCGGAGGAAATCTCCGACTCGAAACCGTTCAGCGACGACGAGA 518
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 557 CCGGGTTTGCTATGCCGCCGGAGGAAATCTCCGACTCTAAACCGTTCAGCGACGACGAGA 616
Query 519 TGATACCCGAAGATATTGAAGCGGGAAAGAAGAAGCCTAAGTTTCATGCAGAACCAACAT 578
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 617 TGATACCCGAAGATATTGAAGCGGGAAAGAAGAAGCCTAAGTTTCAAGCAGAACCAACAT 676
Query 579 TGCCCATCTTTCTCAAGTTCAGGGATGTTACATACAAAGTGGTGATCAAGAAATTGACTT 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGCCCATCTTTCTCAAGTTCAGGGATGTTACATACAAAGTGGTGATCAAGAAATTGACTT 736
Query 639 CTTCAGCGGAAAAAGAGATATTAACTGGGATAAGTGGGAGTGTGAGTCCTGGTGAAGTTC 698
| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 737 CATCTGTGGAGAAAGAGATATTAACTGGGATAAGTGGGAGTGTGAATCCTGGTGAAGTTC 796
Query 699 TTGCTCTCATGGGACCTTCAGGGAGTGGCAAAACAACTCTTCTTAGCTTACTCGCTGGAC 758
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 797 TTGCTCTCATGGGACCCTCAGGGAGTGGCAAAACAACTCTTCTTAGCTTACTTGCTGGTC 856
Query 759 GAATCTCTCAATCCTCTACTGGAGGCTCTGTTACTTACAACGACAAGCCTTACTCTAAAT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GAATCTCTCAATCCTCTACTGGAGGCTCTGTTACTTACAACGACAAGCCTTACTCTAAAT 916
Query 819 ACTTGAAAAGCAAGATTGGGTTTGTGACTCAAGATGATGTTTTGTTTCCTCATCTTACCG 878
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 917 ACTTGAAAAGCAAGATTGGGTTTGTGACTCAAGATGATGTTCTGTTTCCTCATCTTACCG 976
Query 879 TGAAAGAAACGCTAACCTACGCTGCTCGTTTGCGCTTACCAAAGACTCTTACGAGAGAGC 938
||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 977 TGAAAGAAACGCTAACCTATGCTGCTCGTCTGCGCTTACCCAAGACTCTTACGAGAGAGC 1036
Query 939 AGAAGAAGCAACGAGCTTTAGACGTTATTCAAGAGTTGGGTTTGGAGAGGTGCCAAGACA 998
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 1037 AGAAGAAGCAACGAGCTTTAGACGTTATCCAAGAGTTGGGTTTAGAGAGATGCCAAGACA 1096
Query 999 CTATGATTGGAGGAGCATTCGTGCGTGGTGTATCAGGTGGAGAGAGGAAAAGAGTTTCTA 1058
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTATGATTGGTGGAGCATTCGTGCGTGGTGTATCAGGTGGAGAGAGGAAAAGAGTTTCTA 1156
Query 1059 TTGGAAACGAGATCATCATTAATCCTTCTCTATTACTTCTTGATGAGCCAACCTCTGGTT 1118
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1157 TTGGAAACGAGATCATCATTAATCCTTCTCTATTACTTCTTGATGAACCAACCTCTGGTT 1216
Query 1119 TAGATTCCACCACTGCTCTTAGAACCATTCTGATGCTCCACGATATCGCCGAGGCGGGGA 1178
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1217 TAGATTCCACCACTGCTCTTAGAACCATTCTGATGCTCCATGACATCGCCGAGGCGGGGA 1276
Query 1179 AAACAGTGATCACAACGATACATCAGCCCTCGAGTAGGCTCTTCCATAGATTTGACAAGC 1238
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1277 AAACCGTGATCACAACGATACATCAGCCCTCGAGTAGGCTCTTCCATAGGTTTGACAAGC 1336
Query 1239 TGATTCTACTAGGAAGAGGAAGTCTTCTCTACTTTGGAAAATCATCAGAAGCTTTGGATT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1337 TGATTCTACTAGGAAGAGGAAGTCTTCTCTACTTTGGAAAATCATCAGAAGCTTTAGATT 1396
Query 1299 ACTTCTCTTCTATTGGATGCTCTCCTCTTATCGCCATGAATCCTGCAGAGTTTTTGCTCG 1358
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1397 ACTTCTCTTCCATTGGATGCTCTCCTCTTATCGCCATGAATCCTGCAGAGTTCTTGCTCG 1456
Query 1359 ATCTCGCCAACGGTAACATCAATGATATCTCTGTGCCTTCTGAGTTAGATGACAGAGTTC 1418
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1457 ATCTTGCCAACGGTAACATCAACGATATCTCTGTACCTTCTGAGTTAGATGATAGAGTTC 1516
Query 1419 AAGTTGGCAATTCAGGCAGAGAAACTCAAACTGGCAAGCCATCTCCTGCTGCTGTTCATG 1478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 AAGTTGGCAATTCAGGTAGAGAAACTCAAACTGGCAAGCCATCTCCTGCTGCTGTTCATG 1576
Query 1479 AGTATCTAGTGGAGGCATACGAGACTCGGGTTGCAGAACAGGAGAAGAAGAAACTATTGG 1538
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1577 AGTATCTAGTGGAGGCCTACGAGACTAGGGTTGCAGAACAGGAGAAGAAGAAACTATTGG 1636
Query 1539 ATCCTGTGCCACTCGACGAAGAAGCTAAGGCCAAAAGTACGCGCCTAAAGCGCCAATGGG 1598
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1637 ATCCTGTGCCACTCGATGAAGAAGCTAAGGCCAAAAGTACGCGTCTAAAGCGCCAATGGG 1696
Query 1599 GAGCGGGCTGGTGGGAGCAATATTGCATACTGTTCTGCAGAGGACTCAAAGAACGGCGAC 1658
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1697 GAACGTGCTGGTGGGAGCAATATTGCATACTATTCTGCAGAGGACTCAAAGAACGGCGAC 1756
Query 1659 ACGAATACTTCAGTTGGTTGCGTGTTACTCAAGTTCTTTCCACAGCTGTCATTTTAGGTC 1718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1757 ACGAATACTTCAGTTGGTTGCGTGTTACGCAAGTTCTTTCCACAGCTGTCATTTTAGGTC 1816
Query 1719 TTCTCTGGTGGCAGTCGGACATTCGGACTCCAATGGGACTACAAGATCAGGCCGGTTTGC 1778
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1817 TTCTCTGGTGGCAGTCGGACATTAGGACTCCAATGGGACTACAAGATCAGGCTGGTTTGC 1876
Query 1779 TCTTCTTCATAGCAGTTTTTTGGGGATTCTTCCCTGTTTTCACAGCAATCTTTGCGTTTC 1838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1877 TCTTCTTCATAGCAGTTTTTTGGGGATTCTTCCCTGTTTTCACAGCGATCTTTGCGTTTC 1936
Query 1839 CGCAAGAGCGAGCGATGTTGAATAAGGAGAGAGCAGCAGATATGTACAGATTAAGCGCAT 1898
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1937 CGCAAGAGCGAGCGATGTTAAATAAGGAGAGAGCAGCGGATATGTACAGATTAAGCGCAT 1996
Query 1899 ATTTCCTAGCTCGAACCACGAGTGATCTCCCTCTCGACTTTATTCTACCTTCTCTCTTCC 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 ATTTCCTAGCTCGAACCACGAGTGATCTCCCTCTCGACTTTATTCTACCTTCTCTCTTCC 2056
Query 1959 TTCTCGTCGTCTATTTCATGACAGGTCTTCGGATTAGCCCATATCCCTTCTTCTTGAGCA 2018
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2057 TTCTTGTCGTCTATTTCATGACAGGTCTTCGGATCAGCCCATATCCCTTCTTCTTGAGCA 2116
Query 2019 TGCTAACAGTTTTCCTTTGCATCATTGCAGCTCAGGGACTGGGACTTGCAATTGGTGCCG 2078
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2117 TGCTCACAGTTTTCCTTTGCATCATCGCAGCTCAGGGACTCGGACTTGCAATTGGTGCCA 2176
Query 2079 TTTTAATGGATTTAAAGAAGGCTACAACTTTGGCTTCAGTAACTGTCATGACATTCATGC 2138
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2177 TTTTAATGGATTTAAAGAAGGCTACGACTTTGGCTTCAGTAACTGTCATGACATTCATGC 2236
Query 2139 TCGCCGGAGGATTCTTTGTCAAGAAAGTGCCGGTTTTCATATCGTGGATACGTTATCTAT 2198
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 TCGCCGGAGGATTCTTCGTCAAGAAAGTGCCGGTTTTCATATCGTGGATACGTTATCTAT 2296
Query 2199 CTTTCAATTACCACACCTACAAGCTTCTTCTTAAAGTACAATATCAGGACTTCGCTGAAT 2258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2297 CTTTCAATTACCACACCTACAAGCTTCTTCTTAAAGTACAATATCAGGACTTCGCTGTGT 2356
Query 2259 CCATCAACGGGATGAGAATAGACAATGGACTAACTGAAGTAGCCGCACTCGTTGTCATGA 2318
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2357 CCATCAACGGGATGAGAATAGACAACGGACTAACTGAAGTAGCCGCACTCGTTGTCATGA 2416
Query 2319 TTTTCGGTTACCGCCTCCTCGCATATCTGTCTCTAAGGCAAATGAAGATAGCAACATAAC 2378
| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 2417 TATTCGGTTATCGCCTCCTCGCGTATCTGTCTCTAAGGCAAATGAAGATCGTAACATAAC 2476
Query 2379 CCATTTTCCACACGAAGAAATCAAATAACATAGAAGAAGCACTAAGACATAAAGAGTGCG 2438
||||||||||||||||||||||||||||||||||||||||| ||| | | | ||||||
Sbjct 2477 CCATTTTCCACACGAAGAAATCAAATAACATAGAAGAAGCA-TAA-A-A-A--GAGTGCA 2530
Query 2439 TCAGATCTTGATGATCTTGACACGACCAAGCCTTGACAATGATTAAGAGATTGGTCCTAA 2498
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2531 TCAGATCTTGATGATCTTGACACGACCAATCCTTGACAATGATTAAGAGATTGGTCCTAA 2590
Query 2499 GATTATTCTTTCTTAATTACAAAGGTGTTGTGAGTTTGATAATGATTGGATGGTGATAGA 2558
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 GATTATTCTTGCTTAATTACAAAGGTGTTGTGAGTTTGATAATGATTGGATGGTGATAGA 2650
Query 2559 TGTCTTGATTGGAGATAAATAT 2580
||||||||||||||||||||||
Sbjct 2651 TGTCTTGATTGGAGATAAATAT 2672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128076205479
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5