BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487467
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06570.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1572 0.0
> AT5G06570.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:2007990-2011041 REVERSE LENGTH=1103
Length=1103
Score = 1572 bits (851), Expect = 0.0
Identities = 1018/1096 (93%), Gaps = 21/1096 (2%)
Strand=Plus/Plus
Query 1 ATCCAAAACCAAAAGGGAGACTAATTAGAGGAAGAATGGGGTCACTAGGAGAAGAACCAC 60
||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 ATCCAAAACCAAAAGGGAG-------AGACTAAGAATGGGGTCACTAGGAGAAGAACCAC 53
Query 61 AAGTAACAGAAGACTGCATGGGTTTGCTTCAACTCCTAAGCAACGGCACCGTTTTAAGAT 120
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 54 AAGTAGCAGAAGACTGCATGGGTTTGCTTCAACTCCTAAGCAACGGTACCGTTTTGAGAT 113
Query 121 CCGAGGGCATTGACCTTATCACTCAACAAATCCCATTCAAAACCCACCAAACCGTTCTCT 180
||||| ||||||||||||| || ||||||||||||||||||| | |||||||||||||||
Sbjct 114 CCGAGAGCATTGACCTTATTACCCAACAAATCCCATTCAAAAACAACCAAACCGTTCTCT 173
Query 181 TCAAAGACTCAATCTATCACAAACCAAACAATCTTCACCTCCGTCTCTACAAACCCATTT 240
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 174 TCAAAGACTCAATCTATCACAAACCTAACAACCTTCACCTCCGTCTCTACAAACCCATTT 233
Query 241 CTGCCTCCAACCGTACCGCTCTCCCTGTTGTGGTCTTCTTCCACGGCGGGGGATTCTGCT 300
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 234 CCGCCTCCAACCGTACCGCTCTCCCTGTCGTGGTCTTCTTCCACGGCGGGGGCTTCTGCT 293
Query 301 TCGGCTCACGTTCTTGGCCTCACTTTCACAACTTCTGTGTAACTCTTGCATCTTCCCTTA 360
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 294 TCGGGTCACGTTCTTGGCCTCACTTTCACAACTTCTGTCTAACTCTTGCATCGTCCCTTA 353
Query 361 ACGCCCTTGTGGTCGCACCGGACTACCGGCTAGCACCCGAACACCGTCTCCCGGCTGCCT 420
|||||||||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 354 ACGCCCTTGTCGTCTCACCTGACTACCGGTTAGCACCCGAACACCGCCTCCCGGCTGCCT 413
Query 421 TTGAGGATGCCGAGGCCGCT-CTCACATGGCTCCGGGACCAAGCTGTTTCCGGTGGTGTG 479
|||||||||| |||| || | || ||||||||| |||||||||||||||||| |||||||
Sbjct 414 TTGAGGATGCTGAGG-CGGTGCTTACATGGCTCTGGGACCAAGCTGTTTCCGATGGTGTG 472
Query 480 GACCACTGGTTTGAAGGTGGAACAGACGTTGACTTTGACAGGGTTTTTGTTGTGGGTGAT 539
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 AACCACTGGTTTGAAGATGGAACAGACGTTGACTTTGACAGGGTTTTTGTTGTTGGTGAT 532
Query 540 TCTTCCGGTGGGAACATGGCTCATCAACTCGCTGTCCGGTTCGGATCCGGTTCAATTGAG 599
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 533 TCATCCGGTGGGAACATAGCTCATCAACTCGCTGTCCGGTTCGGATCCGGTTCAATCGAG 592
Query 600 TTGACACCTGTTCGGGTTCGCGGTTACGTTCTCATGGGGCCGTTTTTTGGCGGGGAGGAG 659
|||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 593 TTGACACCGGTTCGGGTACGCGGTTACGTTCTTATGGGACCGTTTTTTGGCGGGGAAGAG 652
Query 660 AGGACTAACTCCGAGAATGGCCCCTCTGAAGCTTTGCTCAACTTGGATTTGCTTGACAAG 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 653 AGGACTAACTCCGAGAATGGCCCCTCTGAAGCTTTGCTCAGCTTGGATTTGCTTGACAAG 712
Query 720 TTTTGGAGATTGTCACTACCAAAAGGTGCAACAAGAGATCATCC-CATGGCTAACCCTTT 778
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 713 TTTTGGAGATTGTCACTACCAAACGGTGCAACAAGAGATCA-CCACATGGCTAACCCTTT 771
Query 779 TGGACCGACGAGTCCAACACTCGAATTAATTAGCATAGAGCCAATGTTGGTGATTGTCGG 838
|||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 772 TGGACCAACGAGTCCTACACTCGAATCAATTAGCTTAGAGCCAATGTTGGTGATTGTCGG 831
Query 839 CGGCTCAGAACTCTTGAGAGATAGGGCCAAAGAGTATGCATATAAATTAAAGAAGATGGG 898
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 832 CGGCTCAGAACTCTTGAGAGATAGGGCCAAGGAATATGCATATAAATTAAAGAAGATGGG 891
Query 899 AGaaaaaaaGGTAGATTACATTGAATTCGAAAACGAGGAGCATGGTTTCTACTCCAACAA 958
|| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 892 AGGAAAAAGGGTAGATTACATTGAATTCGAAAACAAGGAGCATGGTTTCTACTCCAACTA 951
Query 959 TCCATCTTCCGAGGCTGCAGAACAAGTTCTTCGTA-CTATTGGAGACTTTATGAACAACT 1017
|||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||
Sbjct 952 TCCATCTTCCGAGGCTGCGGAACAAGTTCTCCGTATC-ATTGGAGACTTTATGAACAACT 1010
Query 1018 TGTTTTAA-TA-----GCATTTGGCCTT-TTGAAGGTAACTAAGTGTTTAATTCAATTAG 1070
||| |||| || ||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 1011 TGTCTTAAGTATTTTAGCATTTGGC-TTGTTGAAGGTAATTAAGTGTTTAATTCAATTAG 1069
Query 1071 GATTCCATGTTAATAA 1086
|||||||| | |||||
Sbjct 1070 GATTCCATCTCAATAA 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5