BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487468
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06580.1 | Symbols: | FAD-linked oxidases family protein | ... 2784 0.0
> AT5G06580.1 | Symbols: | FAD-linked oxidases family protein
| chr5:2011288-2016539 REVERSE LENGTH=1968
Length=1968
Score = 2784 bits (1507), Expect = 0.0
Identities = 1697/1787 (95%), Gaps = 19/1787 (1%)
Strand=Plus/Plus
Query 1 TCCATGGCTTTCTCTTCGAGGTTCGCTCGTTCTAAAGC-AGTTCTCTCTTTTCTCCGGCC 59
|||||||||||| |||| | ||||||||||||||| | | |||||||||||||||||||
Sbjct 64 TCCATGGCTTTCGCTTCAAAATTCGCTCGTTCTAAAACTA-TTCTCTCTTTTCTCCGGCC 122
Query 60 TTGTCGTCAGCTCCACTCGACGCCCAAGTCAACCGCTGACGTGACCGTGA-TTTCTCCGG 118
||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 123 TTGTCGTCAGCTCCACTCGACGCCCAAGTCAACCGGTGACGTGACCGT-ACTTTCTCCGG 181
Query 119 TGAAGGGTCGCCGGAGACTCCCTACTTGGTGGTCCAGCTCTCT-TCTCCCATTGGCTATA 177
||||||| ||||||||||| || ||||| ||||| |||||||| | |||||||||| |||
Sbjct 182 TGAAGGGACGCCGGAGACTTCCAACTTGCTGGTCGAGCTCTCTGT-TCCCATTGGCGATA 240
Query 178 GCTGCCTCCGCCACTTCTTTCGCGTACCTGAATCTGTCGCATCCTTCTATCAGCG-A--A 234
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | | |
Sbjct 241 GCTGCCTCCGCCACTTCTTTCGCTTACCTGAATCTGTCGAATCCTTCTATCAGTGAATCA 300
Query 235 TCATCGGCTTTGGATTCAAGAGATATAACTGTTGGTGGGAAAGATAGCACTGAAGCTGTT 294
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 TCATCGGCTTTGGATTCAAGAGATATAACTGTTGGTGGAAAAGATAGCACTGAAGCTGTT 360
Query 295 GTTAAAGGGGAATACAAAGAGGTCCCTAAAGAGCTTATTACTCATTTGAAAACAATCCTC 354
|||||||| ||||||||| | |||||||| ||||||||| |||| |||||||| ||||||
Sbjct 361 GTTAAAGGAGAATACAAACAAGTCCCTAAGGAGCTTATTTCTCAATTGAAAACTATCCTC 420
Query 355 GAGGATAACTTGACAACTGACTACGATGAGAGGTACTTCCATGGGAAGCCCCAGAACAGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGATAACTTGACAACTGACTACGATGAGAGGTACTTCCATGGGAAGCCCCAGAACAGT 480
Query 415 TTTCACAAGGCAGTGC-ACGTTCCTGATGTTGTTGTTTTCCCTAGGTCTGAAAAAGAAGT 473
|||||||||||||| | || |||||||||| ||||||||||||||||| ||| |||||||
Sbjct 481 TTTCACAAGGCAGT-CAACATTCCTGATGTCGTTGTTTTCCCTAGGTCCGAAGAAGAAGT 539
Query 474 CTCCAAGATTCTTAAATCCTGCAATGAATATAAGGTTCCTATTGTACCATATGGTGGGGC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCCAAGATTCTTAAATCCTGCAATGAATATAAGGTTCCTATTGTACCATATGGTGGGGC 599
Query 534 AACATCGATTGAGGGTCATACCCTGGCTCCAAAAGGAGGTGTGTGCATTGACATGTCATT 593
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 AACATCGATCGAGGGTCATACCCTTGCTCCAAAAGGAGGTGTGTGCATTGACATGTCATT 659
Query 594 AATGAAGAGGGTGAAAGCATTACATGTGGAGGATATGGATGTTGTTGTTGAGCCTGGAAT 653
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 AATGAAGAGGGTGAAAGCATTACATGTGGAGGATATGGATGTTATTGTTGAGCCTGGAAT 719
Query 654 TGGTTGGCTGGAGCTTAATGAATATTTGGAAGAATACGGTCTATTCTTTCCTCTTGATCC 713
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 720 TGGTTGGCTGGAGCTTAATGAATATTTGGAAGAGTATGGTCTATTCTTTCCTCTTGATCC 779
Query 714 AGGACCTGGTGCCTCCATAGGAGGCATGTGTGCTACGCGTTGCTCTGGCTCTTTAGCTGT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGGACCTGGTGCCTCCATAGGAGGCATGTGTGCTACGCGTTGCTCTGGCTCTTTAGCTGT 839
Query 774 AAGGTATGGAACTATGCGGGACAATGTTATAAGCCTTAAGGTGGTTCTTCCTAATGGAGA 833
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AAGGTATGGAACTATGCGTGACAATGTTATAAGCCTCAAGGTGGTTCTTCCTAATGGAGA 899
Query 834 TGTTGTGAAGACAGCTTCACGTGCCAGAAAGAGTGCTGCAGGATACGATTTGACTCGCTT 893
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 TGTTGTGAAGACAGCTTCACGTGCCAGAAAGAGTGCTGCTGGATACGATTTGACTCGCTT 959
Query 894 GGTGATTGGGAGTGAGGGTACTTTAGGAGTCATTACTGAGATTACTCTCCGGCTTCAGAA 953
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GATAATTGGGAGTGAGGGTACTTTAGGAGTCATTACTGAGATTACTCTCCGACTTCAGAA 1019
Query 954 AATCCCACAGCATTCAGTGGTGGCAGTGTGCAATTTCCCTACAGTTAAGGATGCTGCAGA 1013
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 AATCCCACAGCATTCAGTGGTGGCAGTTTGCAATTTCCCTACAGTTAAGGATGCTGCAGA 1079
Query 1014 CGTTGCAATTGCCACTATGATGTCTGGAATACAGGTGTCAAGAGTTGAGCTCCTTGATGA 1073
||| || |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1080 CGTGGCCATTGCCACTATGATGTCTGGAATACAGGTGTCAAGAGTGGAACTCCTTGACGA 1139
Query 1074 GGTTCAAATCAGGGCTATTAATATGGCAAACGGGAAAAACTTGACCGAAGCACCAACTCT 1133
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1140 GGTTCAAATCAGAGCTATTAATATGGCAAACGGGAAAAATTTGACTGAAGCTCCAACTCT 1199
Query 1134 GATGTTCGAGTTTATAGGAACAGAGGCATATACACGTGAGCAGACGCAAATTGTTCAGCA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATGTTCGAGTTTATAGGAACAGAGGCATATACACGTGAGCAGACGCAAATTGTTCAGCA 1259
Query 1194 GATTGCTTCTAAACACAATGGATCAGACTTTATGTTCGCAGAGGAACCTGAAGCaaaaaa 1253
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1260 AATTGCTTCCAAACACAATGGATCAGACTTTATGTTCGCAGAAGAACCTGAAGCAAAAAA 1319
Query 1254 aGAACTCTGGAAGATAAGAAAGGAGGCGCTGTGGGCTTGCTATGCTATGGCGCCAGGTCA 1313
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAACTCTGGAAGATAAGAAAAGAGGCGCTGTGGGCTTGCTATGCTATGGCGCCAGGTCA 1379
Query 1314 TGAAGCAATGATTACGGATGTCTGTGTCCCTTTGTCTCACCTTGCAGAACTAATATCAAG 1373
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1380 TGAAGCAATGATTACAGATGTCTGTGTCCCTTTATCTCACCTTGCAGAACTCATATCAAG 1439
Query 1374 ATCCAAGAAAGAGCTTGATGCATCATCGTTGTTGTGTACCGTTATTGCTCATGCCGGAGA 1433
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATCCAAAAAAGAGCTTGATGCATCATCGTTGTTGTGTACCGTTATTGCTCATGCCGGAGA 1499
Query 1434 TGGAAACTTTCACACATGTATTATGTTTGATCCGAGCAAAGAAGAGCAGCGAAGAGAAGC 1493
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 1500 TGGAAACTTTCACACATGTATTATGTTTGATCCAAGCAGTGAAGAGCAGAGAAGAGAAGC 1559
Query 1494 AGAAAGACTGAACCACTTTATGGTTCACAGTGCACTGTCCATGGATGGAACATGTACCGG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1560 AGAAAGACTGAACCACTTTATGGTTCACAGTGCACTGTCCATGGATGGAACATGTACTGG 1619
Query 1554 AGAGCACGGTGTTGGAACAGGAAAAATGAAGTATCTGGAGAAGGAACTGGGAATAGAAGC 1613
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGAACACGGTGTTGGAACAGGAAAAATGAAGTATCTGGAGAAGGAACTGGGAATAGAAGC 1679
Query 1614 ACTGCAAACTATGAAGAGAATCAAGAAAACGTTGGACCCAAACGATATCATGAACCCAGG 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1680 ACTGCAAACTATGAAGAGAATCAAGAAAACGTTGGACCCAAACGATATCATGAACCCGGG 1739
Query 1674 AAAGTTGATTCCTCCTCATGTATGTTTCTAAAAT-GCCTTGTGTGTTCTTCATGTAAC-T 1731
|||||| ||||||||||||||||||||||||||| || |||||| |||||| | |||| |
Sbjct 1740 AAAGTTAATTCCTCCTCATGTATGTTTCTAAAATTGC-TTGTGT-TTCTTCGTTTAACGT 1797
Query 1732 TT-TGTTAAGTTTTCTGTGTAACACAGTTGTATC-TTTGGTCTACAT 1776
|| ||| | ||| | |||||||||| |||||||| ||||| || |||
Sbjct 1798 TTCTGT-ATGTTGTGTGTGTAACACTGTTGTATCGTTTGGCCT-CAT 1842
Score = 106 bits (57), Expect = 9e-22
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1772 TACATTTAAGTACAAAAGAGCTGATGCAAGCAATTGCATCCGTTTACTTGTGAGCAAGTG 1831
||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| | |||
Sbjct 1878 TACCTTTAAGTACAAAACAGCTGATGCAAGCAATTGCATCCGTTTACTTTTGAGGATGTG 1937
Query 1832 GTAATCTAAGGAAAG 1846
||||| |||||||||
Sbjct 1938 GTAATATAAGGAAAG 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5