BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487469
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06590.1 | Symbols: | unknown protein; Has 38 Blast hits to... 1500 0.0
> AT5G06590.1 | Symbols: | unknown protein; Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:2016645-2018835 FORWARD
LENGTH=1104
Length=1104
Score = 1500 bits (812), Expect = 0.0
Identities = 955/1023 (93%), Gaps = 14/1023 (1%)
Strand=Plus/Plus
Query 1 AAAGACGAAAGCTTTAGAAATGGAGGAAGAGCTCAAGAGTTTGAGCAAAAGCTTAGGAGG 60
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 50 AAAGACGAAAACTTTAGAAATGGAGGAAGAGCTCAAGAGCTTGAGCAAAAGCTTAGGAGG 109
Query 61 ATTCTGCAATCATCTTCAAAGTAGCTGTGATGCTTTCGATCACTCTCTCCAGCGTCGCCC 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 110 ATTCTGCAATCATCTTCAAAGTAGCTGTGATGCTTTCAATCACTCTCTCCAGCGTCGCCC 169
Query 121 TATTCCTCTTGATTCGGCGTCATCCACGTTCATCAAGGGTCTCAATCGTCGAATCTCTAC 180
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 170 TATTCCTCTCGATTCGGCTTCATCGACGTTCATCAAGGGTCTCAATCGTCGAATCTCCAC 229
Query 181 CGCAGCTTCCGAGCTCAATTTTCTGGAATCCATGTCTTTTGGTACAGTCTCCTTCGAGGA 240
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 230 CGCAGCTTCCGAGCTCAGTTTTCTGGAATCTATGTCTTTTGGTACAGTCTCCTTCGAAGA 289
Query 241 GCTTCTGGGTCACTGTAGTCAGATCTACAAGAATAATCAAGACGATCTTTTGCATCTCCA 300
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 290 GCTTCTGGGTCACTGTAGTCAGATCTACAAGAATAATCAAAAAGATCTTTTGCATCTCCA 349
Query 301 GGACCGGCTCACAGATTTTGGCTATGTTCCTGAAATTGAGATTGATGAAGGTAGAGGAGA 360
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 350 GGACCGCCTCACAGATTTCGGCTATGTTCCTGAAATTGAGATTGATGAAGGT--A-GAGA 406
Query 361 TAAAGAATCTGGCTTTGGAGCATTTGGTCATGAGGATTCAAAGCATTCGAATGATGATTT 420
| ||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 407 TGAAGAATCTGTCTTTGGAGCATTTGGTCATGAAGCTTCAAAGCATTCGGATGATGATTT 466
Query 421 AAATTCCT-ATTCATTGCAATGTTCAATCAAAAAAGGATTAGACGAGGACAATCTTCTAG 479
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GGAGT-CTCATTCATTGCAATGTTCAATCAAAAAAGGATTAGACGAGGACAATCTTCTAG 525
Query 480 ATAATTCACTAAATTTGAAGAACCTTGGGCTATCAGATGCTTGTCTTGCATATTTAGCTA 539
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 526 ATAATTCACTAAATTTGAAGAACCTTGGCCTTTCAGATGCTTGTCTTGCTTATTTAGCTA 585
Query 540 CAGAAGTGAATGATAATGTAAAGGATCCTGACACGTCTTTGAAAGAATCAGTGAAGAGCA 599
||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||| | |
Sbjct 586 CAGGAGTTAATGATAATGTGAAGGATCCTGATACGTCTTTGAAAGAATCAGTGAAGGGTA 645
Query 600 AACCATTTGACACAAGTGCTCTACCTGCTCCAAAGGCGTCAGAGCTTTCCAATGAAGATG 659
|| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 646 AATCATTTGACACAAGGGCTCTACCTGCCCCAAATGCGTCAGAGCTTTCCAATGAAGATG 705
Query 660 AGTATGCAACACTAGAGATGGATAGAACTTCAGGGCCTACATTAACATTGATAAAAGAAG 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 706 AGTATGCAACACTAGAGATGGATAAAACTTCAGGGCCTACATTAACATTGATAAAAGAAG 765
Query 720 AATATGATAGTCTTCCCTCTTTCATGAAGTCTCTAGCATCGTGGGAGGATCTGCTCAGTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 766 AATATGATAGTCTTCCCTCTTTCATGAAGTCTCTAGCATCGTGGGAGGATCTGCTAAGTG 825
Query 780 CCGTAAAGAAATTCAACTCGGTCCTTGATAGCAAGAAAGAAATAAACGGATCTTACTACT 839
|||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 826 CCGTGCAGAAATTCAACTCGGTCCTCGATAGCAAGAAAGAAATAAACGGGTCCTACTACT 885
Query 840 TCCGAGCAGATGAGATTCCGACTCTAGGACTTGGCCATAAGGAGAAAGCGTATACGTTAC 899
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 886 TCCGTGCAGATGAGATTCCGACTCTAGGACTTGGCCACAAGGAGAAAGCGTATACGTTGC 945
Query 900 TGCTGACGCGGATGAAGAGACTTGTGGTTGAGACAATGGATGGTGTTATATCTTATAGAG 959
| ||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 946 TCCTGACACGGATGAAGAGACTTGTGGTTGAGACAACGGACGGAGTTATATCTTATAGAG 1005
Query 960 TTGCATAG---T-A-A-T---CCAATATACAGTAATGTTTTACGAGATCTTTGCGTTTTG 1010
|||||||| | | | | |||||||||| ||||||| || |||||||||| ||||||
Sbjct 1006 TTGCATAGAGCTGAGAGTAATCCAATATACATTAATGTTGTATGAGATCTTTGTGTTTTG 1065
Query 1011 GAA 1013
|||
Sbjct 1066 GAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5