BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487474
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06620.1 | Symbols: ATXR4, SDG38 | SET domain protein 38 | c... 1458 0.0
> AT5G06620.1 | Symbols: ATXR4, SDG38 | SET domain protein 38 |
chr5:2033760-2036143 FORWARD LENGTH=998
Length=998
Score = 1458 bits (789), Expect = 0.0
Identities = 918/982 (93%), Gaps = 2/982 (0%)
Strand=Plus/Plus
Query 2 AAAAAATGTCGCGTTTTGCTTTAAATCGTTATAGTCGTTATCTCTCGCGCCTCAAGCCAT 61
||||||||||||| || ||||||||||||||||| |||| | | ||||| || ||| |||
Sbjct 16 AAAAAATGTCGCGATTGGCTTTAAATCGTTATAGCCGTTGTTTTTCGCGGCTTAAGACAT 75
Query 62 TGAAGACGCCTCCGTTTTTCTCTTCCTCTTCTGCGTCGAATCGAGATGGCGACTATCAGA 121
||| |||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 76 TGACGACGCCTCTGTTTTTCTCTTCCTCTGCTGCGTCGAATCGAGATGGTGACTATCAGA 135
Query 122 CCGGACCGCCACCGATCCAAGTCGGACTCACTGAGTCCGCGGGTCGAGCTGTTTTCGCAA 181
|||||||| ||||||| |||||||||||||||||| |||||||| |||||||| ||||
Sbjct 136 TAGGACCGCCCCCGATCCGAGTCGGACTCACTGAGTCAGCGGGTCGGGCTGTTTTTGCAA 195
Query 182 CGCGTAGAATTGGTGCCGGAGATCTCATACACACGGCCAAA-CCCGTCGTAGCATGCCCT 240
|||||| |||||||||||||||||| |||||||||| |||| ||||||||||| ||||||
Sbjct 196 CGCGTAAAATTGGTGCCGGAGATCTTATACACACGG-CAAAGCCCGTCGTAGCTTGCCCT 254
Query 241 TCTCTTTTAAAGCTCGACTCTGTTTGCTATCTTTGCCTCAAGAAACTCATGGGTTCTGCT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 255 TCTCTTTTAAAGCTCGACTCTGTTTGCTATCTTTGCCTAAAGAAACTCATGGGTTCTGCT 314
Query 301 AAATTTGAAGATCGTGGAGTCTCGTATTGTAGTCAAGAGTGCCAAGAGAATTCAAAGGGT 360
|||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 315 AAATTTGAAGATCGTGGAGTTTCTTATTGCAGTCAAGAGTGTCAAGAGAATTCAAAGGGG 374
Query 361 TTTTTGGATGTCGAAAGAAGAGCAGATTGGTCAAGTTTTGTTAATTATTGTGGGATGCAC 420
|||||||||||||||| ||||||||||||||||||||||| | |||||||| ||| |||
Sbjct 375 TTTTTGGATGTCGAAACAAGAGCAGATTGGTCAAGTTTTGATGATTATTGTAGGACGCAT 434
Query 421 AACTTCAAGTACCCGCTTATGGTCAAGAGGTTGTGTTGTATGATAATATCAGGTGTTCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 435 AACTTCAAGTACCCGCTTATGGTCAAGAGGTTGTGTTGTATGATAATATCAGGTGCCCGG 494
Query 481 CCCGCTGACTGTCTTGACATACTTCAACCAGCTGCTTTATCATCTGAGATGATTTCAAAG 540
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 495 CCCGCTGACTGTCTTGACATACTTCAACCAGCTGTTTTATCTTCTGAGATGATTTCAAAG 554
Query 541 ATAGAAGACGGTTATGGTTTATTATGGAATGCCTTCAGGAAGGCAAATTTCAAGGATGAT 600
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATAGAAGACGGGTATGGTTTATTATGGAATGCCTTCAGGAAGGCAAATTTCAAGGATGAC 614
Query 601 GATGTTTCTTTTCTAACTAAACAATGGTATACGGCTATACTCGCCCGGATTCGTATCAAT 660
|||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 615 GATGTTGCTTTTCTGACAAAACAATGGTATACGGCTATACTCGCTCGGATTCGTATCAAT 674
Query 661 GCATTTCGTATTGATCTGGTTGGAGGCTCATGTGGCGAAGACCTTCTGTCACTGGCTGCA 720
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 675 GCATTTCGTATTGACCTGGTTGGAGGCTCATGTGGCGAAGACCTTCTTTCACTAGCTGCA 734
Query 721 GCCTCTGTTGAAGGTGAAGGTGCAGTTGGCCATGCCGTTTATATGTTACCATCCTTCTAC 780
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 735 GCCTCTGTTGAAGGTGAAGGTGCAGTTGGTCATGCCGTTTATATGCTACCATCCTTCTAC 794
Query 781 AATCATGACTGTGATCCCAATGCGCACATTATATGGTTGCAGAATGCAGATGCAAGGTTG 840
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 795 AATCATGACTGTGATCCCAACGCGCACATAATTTGGTTGCATAATGCAGATGCAAGGTTG 854
Query 841 AACACTCTACGTGATGTCGAAGAAGGTGAAGAGCTTCGGATATGTTATATAGATGTAAGC 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 855 AACACTCTACGCGATGTCGAAGAAGGTGAAGAGCTTCGGATATGTTATATAGATGCAAGC 914
Query 901 ATGGGATATGAGGCGCGTCAAACAATACTCTCTCAAGGGTTTGGCTTCCTCTGCAACTGC 960
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 915 ATGGGATATGAAGCGCGACAAACAATACTCTCTCAAGGGTTTGGGTTCCTCTGCAACTGT 974
Query 961 TTACGCTGCCAGTCCGCTGACT 982
||||||||||||||| ||||||
Sbjct 975 TTACGCTGCCAGTCCACTGACT 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5