BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487475
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06650.1 | Symbols: GIS2 | C2H2 and C2HC zinc fingers superf... 867 0.0
AT5G06634.1 | Symbols: | Pseudogene of AT5G06650; GIS2 (GLABRO... 350 1e-95
> AT5G06650.1 | Symbols: GIS2 | C2H2 and C2HC zinc fingers superfamily
protein | chr5:2043486-2044061 FORWARD LENGTH=576
Length=576
Score = 867 bits (469), Expect = 0.0
Identities = 541/576 (94%), Gaps = 3/576 (1%)
Strand=Plus/Plus
Query 1 ATGAAGACTCATGATTTCATGAGCGTCAACTCTTTCTCTCCAAAGGAAAGACCCATTCGC 60
||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAAGACTTATGATTTCATGAACGTCAACTCTTTCTCTCCTAAGGAAAGACCCATTCGC 60
Query 61 CTCTTTGGCTTCGAGTTTGGAGCTTCTCATGAAGAATCTGAGTCCAAAGACAGTTACAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CTCTTTGGCTTCGAGTTTGGAGCTTCTCATGAAGAATCTGAGTCCAAAGACAATTACAAC 120
Query 121 GAGAACAATGAAAGCATCAACGACAATAACAAAGAAAAAAGATTCAAGTGCCACTATTGT 180
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GAGAACAATGAAAGCATCAAAGACGATAACAAAGAAAAAAGATTCAAGTGCCACTATTGT 180
Query 181 TTCCTGAACTTCCCTACTTCACAAGCCCTAGGCGGCCATCAAAACGCTCACAAGAGAGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCGGAACTTCCCTACTTCACAAGCCCTAGGCGGCCATCAAAACGCTCACAAGAGAGAA 240
Query 241 AGTCAACAAACAAAACGCTTCAACCTCCATTCAAACACAGCCGCTTTCTTCCACCGCCAC 300
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CGTCAACAAACTAAACGCTTCAACCTCCATTCAAACGCAGCCGCTTTCTTCCACCGCCAA 300
Query 301 CAAAACCACATTGCTACTTCTAGGTTCTACTAGGATCGCTTTAGCCTTGACGCTGCTCGA 360
||||||||||||||| |||||||| ||||| ||||||||| ||||||||| |||| || |
Sbjct 301 CAAAACCACATTGCTGCTTCTAGGCTCTACGAGGATCGCTATAGCCTTGAAGCTGTTCAA 360
Query 361 ATAAACGAAGCGAGATTAGGGTTATGTAGTAGGTATAACTCATCCGCAAGTTTTAATCGC 420
|| ||||| |||||||||||||||||| ||| |||||||||||| || |||||||||||
Sbjct 361 ATCAACGACGCGAGATTAGGGTTATGTCGTATGTATAACTCATCTGCGAGTTTTAATCGT 420
Query 421 GACCGTTCATCTTAT-A-A-TAGATATATGCCTTGGTTCATCGGTGATCGCCAGACTAGA 477
||||||||||||||| | | ||||||||| ||||||||||||||||||| ||||||||||
Sbjct 421 GACCGTTCATCTTATTATAATAGATATATTCCTTGGTTCATCGGTGATCACCAGACTAGA 480
Query 478 CCGACGTATGTTGGTGGTGGTAGCAGCAGCCATGGTCTGTTATGCGAGTCCAAGAAGAAT 537
|| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 481 CCAACGTATGTCGGTGGTGGTAGCAGCAGCCATGGTCTGTTTTACGAGTCCAAGAAGAAT 540
Query 538 GTACCGGACCAAGTGAGTTTGGATCTACGCCTCTAG 573
||||||||||| ||||||||||||||||||||||||
Sbjct 541 GTACCGGACCACGTGAGTTTGGATCTACGCCTCTAG 576
> AT5G06634.1 | Symbols: | Pseudogene of AT5G06650; GIS2 (GLABROUS
INFLORESCENCE STEMS 2); nucleic acid binding / transcription
factor/ zinc ion binding | chr5:2038817-2039221 FORWARD
LENGTH=405
Length=405
Score = 350 bits (189), Expect = 1e-95
Identities = 353/426 (83%), Gaps = 36/426 (8%)
Strand=Plus/Plus
Query 130 GAAAGCATCAACGACAATAAC--A-AAGAAA--AAAGATTCAAGTGCCACTATTGTTTCC 184
||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 1 GAAAGCATCAACGACAATAACAAAGAAGAAATTAAAGATTCAAGTGCCACTATTGTTTCA 60
Query 185 TGAACTTCCCTACTTCACAAG-CC---CTAGGCGGCCATCAAAACGCTCACAAGAGAGAA 240
|||||||||||||||||||| || ||||| ||||||||||||||| ||| ||||||
Sbjct 61 AGAACTTCCCTACTTCACAAGCCCTAGCTAGGTGGCCATCAAAACGCT--CAATAGAGAA 118
Query 241 AGTCAACAAACAAAACGCTTCAACCTCCATTCAAACACAGCCGCTTTCTTCCACCGCCAC 300
|||||| ||| |||||||||||| ||||||||||||||| |||||| ||||||| |||
Sbjct 119 CGTCAACGAACCAAACGCTTCAACGTCCATTCAAACACAGTCGCTTT-TTCCACCCCCAA 177
Query 301 CAAAACCACATTG-CTACTTCTAGGTTCTACTAGGATCGCTTTAGCCTTGACGCTGCTCG 359
|| | ||| || ||||||||| | || |||||||||||||| |||| |||||||
Sbjct 178 CATTGGTGC-TTGCCTGCTTCTAGGTGCAACGAGGATCGCTTTAGCTTTGAAGCTGCTCA 236
Query 360 AATAAACGA-AGCGAGATTAGGGTTATGTAGTAGGTATAACTCATCCGCAAGTTTTAATC 418
||| ||| | | |||||||||| |||||| ||| | || || || |||||
Sbjct 237 AATCAACCACA-CGAGATTAGGATTATGTCGTA-G-----CT-AT----AA---CTAATC 281
Query 419 GCGACCGTTCATCTTATAATAGATATATGCCTT-G-GTTCATCGGTGATCGCCAGACTAG 476
|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 282 -CGACCGTTCATCTTATAATAGATATATGCCTTGGCGTTCATCGGTGATCACCAGACTAG 340
Query 477 ACCGACGTATGTTGG-TGGTGGTAGCAGCAGCCATG-GTCTGTTATGCGAGTCCAAGAAG 534
|||||||||||| || |||||||||||||||| || |||| || | ||| ||||||| |
Sbjct 341 ACCGACGTATGTCGGGTGGTGGTAGCAGCAGC-ATAAGTCTATTTTACGATTCCAAGACG 399
Query 535 AATGTA 540
||||||
Sbjct 400 AATGTA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5