BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487477
Length=2970
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06670.1 | Symbols: | P-loop containing nucleoside triphosp... 4169 0.0
AT3G12020.2 | Symbols: | P-loop containing nucleoside triphosp... 1327 0.0
AT4G34071.1 | Symbols: | other RNA | chr4:16325750-16326840 FO... 169 2e-40
AT2G45245.1 | Symbols: | other RNA | chr2:18659422-18660655 RE... 145 3e-33
AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 113 8e-24
> AT5G06670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2048243-2055019
REVERSE LENGTH=2961
Length=2961
Score = 4169 bits (2257), Expect = 0.0
Identities = 2771/3007 (92%), Gaps = 83/3007 (3%)
Strand=Plus/Plus
Query 1 ATGGGATCTAAACAAGTGTCGAAGTCTAGAAATGCTGGGCTTAGTAAGTTTAAGGA-TGC 59
||||||||||||||||| || ||| ||||||||| ||| |||| ||| |||| || ||
Sbjct 1 ATGGGATCTAAACAAGTATCAAAGACTAGAAATGGTGGATTTAGCAAG-TTAAAGACTGT 59
Query 60 TGAGTCCCCTGTATCTTCAACAACCTCGTCTTCAAAACTTTATCCAGAGACATCTGTGGA 119
||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||||| ||
Sbjct 60 TGAGTCCTCTGCATCTTCAACAACCTCGTCTTCAAAACTTTATCAAGAGGCGTCTGTAGA 119
Query 120 TAGCCATAGCCCCCCTACGTCTTCATCTGCTCGAAGCAAGCCTCATTTACAATATACAGG 179
|||||||||| ||||||| |||||||| | ||||||||||||||| |||| |
Sbjct 120 TAGCCATAGCTCCCCTACTTCTTCATCGGTTCGAAGCAAGCCTCAGTTAC------C--- 170
Query 180 AAAGGTACCCCCTAAGCCTTTGCAGTCCAAAGAAAATGTCACTGTCACAGTTCGTTTTCG 239
| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 171 ------A---CCTAAGCCTTTGCAGTCCAAAGAAAATGTCACTGTCACTGTGCGTTTTCG 221
Query 240 TCCACTCAGTCCGAGGGAAATCCGCAAAGGAGAGGAGATTGCATGGTATGCAGATGGAGA 299
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 222 TCCACTCAGTCCAAGGGAAATCCGGAAAGGAGAGGAGATTGCATGGTATGCAGATGGGGA 281
Query 300 AACAATTGTGCGGAATGAGCATAATCAGTCAATAGCTTATGCCTATGATCGTGTTTTCGG 359
||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 282 AACGATAGTGCGGAATGAGAATAATCAATCAATAGCTTATGCCTATGATCGTGTTTTCGG 341
Query 360 GCCTACGACGACAACACGCCATGTCTATGATGTTGCTGCTCAGCATGTAGTTAATGGTGC 419
|||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 342 GCCTACTACGACTACACGCAATGTCTATGATGTTGCTGCTCAGCATGTCGTTAATGGTGC 401
Query 420 TATGGCGGGGGTC-A----AC-GTGAGTGTTAATCCAACCACAGGGACCATTTTCGCATA 473
||||||||||||| | || ||||||||||| |||||||||||||||||||||||||
Sbjct 402 TATGGCGGGGGTCAATGTGACTTTGAGTGTTAATTCAACCACAGGGACCATTTTCGCATA 461
Query 474 CGGAGTGACAAGCAGTGGAAAAACTCACACTATGCATGGGGACCAAAGATCTCCTGGTAT 533
||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct 462 TGGAGTGACAAGCAGTGGGAAAACTCATACAATGCATGGGAACCAAAGATCTCCTGGTAT 521
Query 534 AATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAGAGACACCAAGGCGAGAATT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 AATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAGAGACACCAAGGCGAGAATT 581
Query 594 TCTCCTACGTGTTTCTTACTTTGAAATATATAATGAGGTTGTCAATGATTTATTGAACCC 653
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 582 TCTCCTACGTGTTTCCTACTTTGAAATTTATAACGAGGTTGTCAATGATTTGTTGAATCC 641
Query 654 AGCAGGACAAAATTTGAGGACCAGAGAAGATGAGCAGGGAACCTTTATCGAAGGGATTAA 713
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 642 AGCAGGACAAAATTTGAGGATCAGAGAAGATGAGCAGGGAACCTATATTGAAGGGATTAA 701
Query 714 AGAAGAAGTTGTTCTATCCCCTGCTCATGCGCTTTCTCTTATAGCAGCTGGAGAAGAGCA 773
|||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 702 AGAAGAGGTTGTTCTGTCCCCTGCTCATGTGCTTTCTCTCATAGCAGCTGGAGAAGAGCA 761
Query 774 CCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGCCGAAGCCATACAATGTTTAC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGCCGAAGCCATACAATGTTTAC 821
Query 834 CCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAAGGTGGAGCTGTACACCTCTC 893
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 822 CCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAAGGTGGAGCAGTACACCTCTC 881
Query 894 GCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAGGCTGAAACCAGTGGTTT 953
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 882 GCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAAGCTGAAACCAGCGGTTT 941
Query 954 AAGACGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTGACTTTAGGGACTGTAATATC 1013
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 942 AAGGCGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTAACTTTAGGGACCGTAATATC 1001
Query 1014 AAAGCTTACAGATAAGAA-GGCTAGTCATGTACCATATAGGGACTCTAAATTAACCAGGC 1072
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1002 AAAGCTTACAGAT-AGAAGGGCTAGTCATGTACCATATAGGGACTCTAAATTAACCAGAC 1060
Query 1073 TGCTTCAGTCCTCATTGAGTGGGCATGGACGTGTATCTCTTATATGTACAGTGACTCCTG 1132
||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1061 TGCTTGAGTCCTCACTGAGTGGTCATGGACGTGTATCTCTCATATGTACAGTGACACCTG 1120
Query 1133 CATCAAGCAGCTCCGAAGAAACACACAACACATTGAAATTTGCCCATCGTGCAAAGCATA 1192
||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1121 CATCAAGCAACTCTGAAGAAACACACAACACATTGAAGTTTGCTCATCGTGCAAAGCATA 1180
Query 1193 TTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAGAAATCATTGATTAAGAAGTATC 1252
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1181 TTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAGAAATCATTGATCAAGAAGTACC 1240
Query 1253 AATACGAGATTCGCCAACTCAAGGAGGAGTTGGAACAGCTTAAAGAAGGAATTAAACCAG 1312
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1241 AATACGAGATTCGCCAACTCAAGGAGGAGCTGGAACAGCTTAAACAAGGAATTAAACCAG 1300
Query 1313 TTTCTCAGTTAAAGGATATTAGTGAAGATG--AT-G---TTGTTCTCCTGAAGCAGAAAC 1366
|||||||| |||||||||| |||| ||||| || | |||||||||||||||||||||
Sbjct 1301 TTTCTCAGCTAAAGGATATCAGTGGAGATGATATCGACATTGTTCTCCTGAAGCAGAAAC 1360
Query 1367 TAGAAGAAGAGGAAGATGCTAAAGCAGCTCTCTTGAGTCGAATCCAACGGCTTACGAAAC 1426
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1361 TAGAAGAAGAGGAAGATGCTAAAGCAGCTCTCTTGAGTCGAATCCAAAGGCTGACAAAAC 1420
Query 1427 TAATTCTCGTGTCTACTAAAACTCCACAAACATCGCGGTTGTCTTATCGTGTTGATCCTT 1486
||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1421 TAATTCTCGTGTCTAATAAAACTCCACAAACATCGCGGTTTTCTTATCGTGCTGATCCTC 1480
Query 1487 GGAGGAGACACTCATTTGGAGAAGAGGAGTTGATAATGCATGGCCAGCTTGCTTACCTAC 1546
|||||||||||||| || ||| | || | | || |||||||||||||||
Sbjct 1481 GGAGGAGACACTCA-TT-------CGGA---G--AA-G-A-GG--AGCTTGCTTACCTAC 1522
Query 1547 CGTATAAGAGGCGCGACTTGACGGATGATGAGAACCTTGAATTCTATGTTTCTCGTGAAG 1606
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1523 CGCATAAGAGGCGCGACTTGACAGATGATGAGAACCTTGAATTGTATGTTTCTCGTGAAG 1582
Query 1607 GGACTCCTGAGATTACAGATGATGCGTTTAGagaagaaaagaagacaaggaagaatggcc 1666
||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1583 GGACTCCTGAGATTATAGATGATGCGTTTATAGAAGAAAAGAAGACAAGGAAGCATGGCC 1642
Query 1667 tactgaactggttgaaacttaagaaaaaagaaaaCAGTTTGGGGGGATC-A-----A--G 1718
||||||||||||||||| ||||||||||||| | ||||||||||||||| | | |
Sbjct 1643 TACTGAACTGGTTGAAAATTAAGAAAAAAGACAGCAGTTTGGGGGGATCAAGCCTCAGTG 1702
Query 1719 -C-A-TC-AGTG-A--CAAGTCCAACAGTACACCGTCAACTCCTCAAGGAGAAGGCAGTA 1771
| | || |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACAAGTCGAGTGCAGTCAAGTCCAACAGTACACCGTCAACTCCTCAAGGAGAAGGCAGTG 1762
Query 1772 ATTTTCGTACAGGATCTAGACTTTCAGAAGGCTCCGCATTGGCAGATCAACTCT-TAGAG 1830
|||||| ||||| ||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1763 ATTTTCATACAGAATCTAGACTTTCAGAAGGCTCCGCATTGGCAGATCAAAT-TATAGAG 1821
Query 1831 ACTAGGGATAATGA-AGAAGCTCATGAAGATAGTTTTCATGAGATTGAGACACCTGAGAC 1889
|||| ||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1822 ACTATGGAGAAT-AGAGAAGCTCATGAAGACAGTTTTCATGAGATTGAGACACCTGAGAC 1880
Query 1890 CAGAATAAAAATGATCAATCAGATGGAAACACTGAGGGAACAACAAAAGATTTTATCTGA 1949
||||||||||||||| | |||||||||| |||||||||||| ||||||| |||||| ||
Sbjct 1881 TAGAATAAAAATGATCGACCAGATGGAAATACTGAGGGAACAGCAAAAGACTTTATCAGA 1940
Query 1950 GGAGATGGTGCAACAATCAAGGTCTCTTAAACTGTTGTCAGAAGAGGCTGCCAAAGCCCC 2009
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1941 GGAGATGGCACAACAATCAAGGTCTTTTAAACTGTTGTCAGAAGAGGCTGCCAAAGCCCC 2000
Query 2010 TCAAAATGAAGAAATTAAAGTGGAGATTAAAAACCTCAATGGCGACATCAAGGCAAAGAA 2069
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2001 TCAAAATGAAGAAATTAAAGCAGAGATTATAAACCTCAATGGCGACATCAAGGCAAAGAA 2060
Query 2070 CGACCAGATTGCTACGTTGGGGAAACAAATTTTGGATTTTGTTATAGCATCACAAGATGA 2129
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2061 CGACCAGATTGCTACGTTGGGGAAACAAATACTGGATTTTGTTATAGCATCACATGATGA 2120
Query 2130 ATTGGTA-AAATCTGATATCGTACAGGCTGTTTCTGAAATGAGGGCTCAACTAAATGAGA 2188
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2121 ATTGG-ATAAATCTGATATCGTGCAGGCTGTTTCTGAAATGAGGGCTCAACTAAATGAGA 2179
Query 2189 AATCTTTTGAACTCGAGGTTAAAGCTGCAGATAATCGTATCATTCAGGAACAACTCAACC 2248
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2180 AATGTTTTGAACTCGAGGTTAAAGCTGCAGATAATCGTATCATTCAGGAACAACTC-ACC 2238
Query 2249 -AAAAGACATGTTTATGTGAAGAGTTGCAAGAAGAGGTTGCAAACCTAAAGCAGCAGCTC 2307
|||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2239 GAAAAGACAAGTTTCTGTGAAGATTTGCAAGAAGAGGTTGCAAACCTAAAGCAGCAGCTC 2298
Query 2308 TCTGACGCCCTGGAACTGGTAGATATCAGCTCGGTCACAAGTCACATGCAAAAATCTTCT 2367
||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||
Sbjct 2299 TCTGACGCCCTGGAACTGGGAGATATCAACTCGGTCACATGTCACATGCAACAATCTTCT 2358
Query 2368 GAATCGCCAAACAAAAATAAAGAAAAAGTCATAGAGGCACAGGCATTTGAGATTGAAGAG 2427
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2359 CAATCGCCAAACAAAAATGAAGAAAAAGTCATAGAAGCACAGGCATTTGAGATTGAAGAG 2418
Query 2428 CTTAAACTGAAAGCTACAGAACTAAGTG-ACTTGAATGAACAACTAGAACTCCGAAATAA 2486
||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||| ||
Sbjct 2419 CTTAAACTGAAAGCTGCAGAACTAAGTGAAC-TGAATGAACAACTAGAAATCCGAAACAA 2477
Query 2487 GAAACTAGCTGACGAGAGTTCATATGCGAAAGAGCTTGCTTCAGCGGCTGCTACTGAGCT 2546
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2478 GAAACTAGCTGAAGAGAGTTCATATGCGAAAGAGCTTGCTTCAGCGGCTGCTATTGAGCT 2537
Query 2547 CAAGGCATTGTCTGAGGAAATAGCAAGACTTATGAATCACAACGAGAGACTAGCAGCTGA 2606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2538 CAAGGCATTGTCTGAGGAAATAGCAAGACTTATGAATCACAACGAGAGACTAGCAGCTGA 2597
Query 2607 TCTGACAGCAGTGCAGAAGAGCTCTGTT---ACACCACGGGGCAAGACAGGAAACCTGAG 2663
|||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 2598 TCTGGCAGCAGTGCAGAAGAGCTCTGTTACAACACCACAGGGAAAGACAGGAAACCTGAG 2657
Query 2664 GAATAGAAGGAGAGAGAGTGTTACAAAGAGGAAAGAGCAAGACAACTCGTTGATGGAACT 2723
|||| |||| || ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2658 GAATGGAAGAAGGGAGAGTGTTTCAAAGAGGAAAGAGCAAGAAAACTCGTTGATGGAACT 2717
Query 2724 GAAGAGAGAACTGAGTATGAGCAAGGAACGTGAAGTTTCATTTGAAGCTACTCTGGTTGA 2783
|||||||||||||| | ||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 2718 GAAGAGAGAACTGACTGTGAGCAAGGAACGTGAAGTTTCATTCGAAGCTGCTCTCATTGA 2777
Query 2784 AAAAATTCAGAGGGAAGCCGAGCTACAAAGAACAGTAGAAGAGTCGAAACAAAGGGAAGC 2843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2778 AAAAATTCAGAGGGAAGCCGAGCTACAAAGAACAGTAGAAGAGTCGAAACAAAGGGAAGC 2837
Query 2844 GTATCTAGAGAATGAACTTGCTAATATGTGGGGTCTAGTTGCCAAGATGAGATCCCAAGG 2903
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2838 GTATCTAGAGAATGAACTTGCTAATATGTGGGGTCTTGTTGCCAAGTTGAGATCCCAAGG 2897
Query 2904 AGCTGCTAATTCAGGTTTATCTGATTCAGTATCAGAGACACAACAAATCTACCATTTTAG 2963
|||||||||||||||||| ||||||||||||||||||||| | || || | |||||| |
Sbjct 2898 AGCTGCTAATTCAGGTTTGTCTGATTCAGTATCAGAGACA-AG-AA-TCGAGCATTTTGG 2954
Query 2964 GACTTAA 2970
|||||||
Sbjct 2955 GACTTAA 2961
> AT3G12020.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:3826148-3834318
FORWARD LENGTH=3598
Length=3598
Score = 1327 bits (718), Expect = 0.0
Identities = 1136/1335 (85%), Gaps = 39/1335 (3%)
Strand=Plus/Plus
Query 48 GTTTAAGGATGCTGAGTCCCCTGTATCTTCAACAACCTCGTCTTCAAAACTTTATCCAGA 107
||| |||| |||||| || ||| |||||| |||||||||||||| || ||||||| |||
Sbjct 330 GTTAAAGGGTGCTGATTCTACTGCATCTTCGACAACCTCGTCTTCGAAGCTTTATCAAGA 389
Query 108 GACATCTGTGGATAGCCATAGCCCCCCTACGTCTTCATCTGCTCGAAGCAAGCCTCATTT 167
||| ||| | ||| |||||||| ||||| | ||||||||||||| |||||||| || ||
Sbjct 390 GACTTCTATAGATGGCCATAGCTCCCCTGCTTCTTCATCTGCTCAAAGCAAGCAGCAGTT 449
Query 168 ACAATAT-A-CAGGA-AAGGTACCCCCTAAGC--CTTTGCAGTCCAAAGAAAATGTCACT 222
| | | | || || || || | || | || || ||| |||||||| |||||
Sbjct 450 -C-TTCTCACCA-GATCCCTTA-CCAC-AAACTGCTCAGCGGTCTAAAGAAAACGTCACA 504
Query 223 GTCACAGTTCGTTTTCGTCCACTCAGTCCGAGGGAAATCCGCAAAGGAGAGGAGATTGCA 282
|| |||||||| ||||| ||||||||||| |||||||| ||| |||| |||||| |||||
Sbjct 505 GTGACAGTTCGCTTTCGCCCACTCAGTCCAAGGGAAATTCGCCAAGGGGAGGAGGTTGCA 564
Query 283 TGGTATGCAGATGGAGAAACAATTGTGCGGAATGAGCATAATCAGTCAATAGCTTATGCC 342
|||||||||||||| ||||| || ||||| ||||||||||||| | ||||||||||||||
Sbjct 565 TGGTATGCAGATGGGGAAACTATCGTGCGAAATGAGCATAATCCGACAATAGCTTATGCC 624
Query 343 TATGATCGTGT-TTTCGGGCCTACGACGACAACACGCCATGTCTATGATGTTGCTGCTCA 401
||||| ||||| ||| || ||||| || ||||||||| ||||||||||| ||||||| ||
Sbjct 625 TATGACCGTGTCTTT-GGACCTACAACCACAACACGCAATGTCTATGATATTGCTGCACA 683
Query 402 GCATGTAGTTAATGGTGCTATGGCGGGGGTCAACGTGAGTGTTAATCCAACCACAGGGAC 461
||||| |||||||| ||||| || | | | | | || || | |||||
Sbjct 684 CCATGTTGTTAATGGGGCTAT------GG---A-G-G-G-G---AT--AA--A-TGGGAC 722
Query 462 CATTTTCGCATACGGAGTGACAAGCAGTGGAAAAACTCACACTATGCATGGGGACCAAAG 521
|||||||||||| |||||||||||||||||||| || ||||| |||||||| ||||| ||
Sbjct 723 CATTTTCGCATATGGAGTGACAAGCAGTGGAAAGACACACACAATGCATGGTGACCAGAG 782
Query 522 ATCTCCTGGTATAATACCATTAGCCGTGAAAGATGCTTTCAGCATTATACAAGAGACACC 581
|||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||
Sbjct 783 ATCTCCTGGTATTATACCGTTAGCAGTGAAAGATGCTTTCAGCATCATCCAAGAGACTCC 842
Query 582 -AAGGCGAGAATTTCTCCTACGTGTTTCTTACTTTGAAATATATAATGAGGTTGTCAATG 640
|| ||||||||||| || ||| |||| ||| | |||||||||||||||||||||||||
Sbjct 843 TAA-TCGAGAATTTCTTCTGCGTATTTCCTACATGGAAATATATAATGAGGTTGTCAATG 901
Query 641 ATTTATTGAACCCAGCAGGACAAAATTTGAGGACCAGAGAAGATGAGCAGGGAACCTTTA 700
|||| ||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 902 ATTTGTTGAATCCAGCAGGACACAATTTGAGGATCAGAGAAGACAAGCAGGGAACCTTTG 961
Query 701 TCGAAGGGATTAAAGAAGAAGTTGTTCTATCCCCTGCTCATGCGCTTTCTCTTATAGCAG 760
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 962 TCGAAGGGATTAAAGAAGAAGTTGTTTTATCCCCTGCTCATGCGCTTTCTCTTATTGCAG 1021
Query 761 CTGGAGAAGAGCACCGACATATTGGATCCACAAGTTTTAATTTGCTCAGCAGCCGAAGCC 820
||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 1022 CTGGAGAAGAGCAACGACATGTTGGATCCACAAATTTTAATTTGCTCAGCAGCCGGAGCC 1081
Query 821 ATACAATGTTTACCCTGACTATAGAGAGTAGTCCCTTGGGTGACAATAATGAAGGTGGAG 880
||||||| ||||| |||| ||||| ||||||||||| |||||||| | | |||||| ||
Sbjct 1082 ATACAATATTTACGTTGACGATAGAAAGTAGTCCCTTAGGTGACAAGAGTAAAGGTGAAG 1141
Query 881 CTGTACACCTCTCGCAGCTGAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAGGCTG 940
||||||||||||| || ||||||||| |||| ||||||||||| ||||| ||||||| ||
Sbjct 1142 CTGTACACCTCTCACAACTGAACCTCGTTGATCTGGCAGGTTCCGAGAGTTCAAAGGTTG 1201
Query 941 AAACCAGTGGTTTAAGACGCAAGGAAGGGTCTTATATAAATAAAAGTTTGCTGACTTTAG 1000
||||||||||| |||||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 1202 AAACCAGTGGTGTAAGACGCAAAGAAGGATCATATATAAATAAAAGTTTGCTGACGTTAG 1261
Query 1001 GGACTGTAATATCAAAGCTTACAGATAAGAAGGCTAGTCATGTACCATATAGGGACTCTA 1060
||||||| |||||||||||||| ||| || |||| ||||||||||| || |||||||
Sbjct 1262 GGACTGTGATATCAAAGCTTACGGATGTGAGGGCTTCACATGTACCATACAGAGACTCTA 1321
Query 1061 AATTAACCAGGCTGCTTCAGTCCTCATTGAGTGGGCATGGAC-GTGTATCTCTTATATGT 1119
| ||||||||| | |||||||||||||||||||| |||| || | |||||||| || |||
Sbjct 1322 AGTTAACCAGGATCCTTCAGTCCTCATTGAGTGGTCATG-ACCGAGTATCTCTCATTTGT 1380
Query 1120 ACAGTGACTCCTGCATCAAGCAGCTCCGAAGAAACACACAACACATTGAAATTTGCCCAT 1179
|| || ||||||||||||||||| || |||||||||||||| ||| |||||||||| |||
Sbjct 1381 ACCGTCACTCCTGCATCAAGCAGTTCGGAAGAAACACACAATACACTGAAATTTGCTCAT 1440
Query 1180 CGTGCAAAGCATATTGAGATTCAAGCCGCACAGAACAAGATAATTGATGAGAAATCATTG 1239
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 1441 CGTGCAAAGCATATTGAGATTCAAGCTGAACAAAACAAGATAATTGATGAGAAATCATTA 1500
Query 1240 ATTAAGAAGTATCAATACGAGATTCGCCAACTCAAGGAGGAGTTGGAACAGCTTAAAGAA 1299
|| |||||||| ||| ||||||||| ||||| ||||| |||||||||||||||||| |
Sbjct 1501 ATCAAGAAGTACCAACGCGAGATTCGTCAACTGAAGGAAGAGTTGGAACAGCTTAAACA- 1559
Query 1300 GGAA-TTAAACCAGTTTCTCAGTTAAAGGATATTAGTGAAGATGATGTTGTTCTCCTGAA 1358
|||| || ||||||| ||||| | ||||||||| ||| ||||||| ||||||| |||||
Sbjct 1560 GGAAATTGTACCAGTTCCTCAGCTGAAGGATATTGGTGCAGATGATATTGTTCTTCTGAA 1619
Query 1359 GCAGAAACTAGAAGA 1373
|||||| ||||||||
Sbjct 1620 GCAGAAGCTAGAAGA 1634
> AT4G34071.1 | Symbols: | other RNA | chr4:16325750-16326840
FORWARD LENGTH=525
Length=525
Score = 169 bits (91), Expect = 2e-40
Identities = 102/107 (95%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 900 GAACCTCATTGACCTGGCAGGTTCTGAGAGCTCAAAGGCTGAAACCAGTGGTTTAAGACG 959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 307 GAACCTCATTGACCTGGCAGGTTCTGAAAGCTCAAAGGCTGAAACCAGTGGTTTAAGGCG 366
Query 960 CAAGGAAGGGTCTTATATAAATAAAAG-TTTGCTGACTTTAGGGACT 1005
||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 367 CAAGGAAAGGTCTTATATAAATAAA-GCTTTGCTGACTTTAGGGACT 412
Score = 126 bits (68), Expect = 1e-27
Identities = 109/128 (85%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 5 GATCTAAACAAGTGTCGAAGTCTAGAAATGCTGGGCTT-AGTAAGTTTAAG--GATGCTG 61
||||||||||| | || ||||||| ||||||| || || || ||||| ||| || ||
Sbjct 155 GATCTAAACAAATATCAAAGTCTACAAATGCT-GGATTAAGCAAGTTAAAGCCTTTG-TG 212
Query 62 AGTCCCCTGTATCTTCAACAACCTCGTCTTCAAAACTTTATCCAGAGACATCTGTGGATA 121
| |||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 213 ATTCCCTTGTATTTTCAACAACCTCGTCTTCAAAACTTTATCCAAAGACATATGTGGATA 272
Query 122 GCCATAGC 129
||||||||
Sbjct 273 GCCATAGC 280
> AT2G45245.1 | Symbols: | other RNA | chr2:18659422-18660655
REVERSE LENGTH=386
Length=386
Score = 145 bits (78), Expect = 3e-33
Identities = 114/130 (88%), Gaps = 7/130 (5%)
Strand=Plus/Plus
Query 4 GGATCTAAACAAGTGTCGAAGTCTAGAAATGCTGGGCTT-AGTAAGTTTAAGGA--TGCT 60
|||||||||||||| || ||||||| |||| || || || || ||| |||| || || |
Sbjct 94 GGATCTAAACAAGTATCAAAGTCTACAAATTCT-GGATTAAGCAAG-TTAAAGACTTG-T 150
Query 61 GAGTCCCCTGTATCTTCAACAACCTCGTCTTC-AAAACTTTATCCAGAGACATCTGTGGA 119
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 151 GATTCCCCTGTATCTTCAACAACCTCGTCTTCCAAAACTTTATCCAAAGACATCTGTGGA 210
Query 120 TAGCCATAGC 129
||||||||||
Sbjct 211 TAGCCATAGC 220
> AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: inflorescence meristem,
flower, cultured cell; EXPRESSED DURING: petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1);
Has 171 Blast hits to 170 proteins in 31 species:
Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants
- 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
| chr2:18699428-18703093 REVERSE LENGTH=1645
Length=1645
Score = 113 bits (61), Expect = 8e-24
Identities = 97/113 (86%), Gaps = 7/113 (6%)
Strand=Plus/Minus
Query 4 GGATCTAAACAAGTGTCGAAGTCTAGAAATGCTGGGCTT-AGTAAGTTTAAGGA--TGCT 60
|||||||||||||| || ||||||| |||| || || || || ||| |||| || || |
Sbjct 110 GGATCTAAACAAGTATCAAAGTCTACAAATTCT-GGATTAAGCAAG-TTAAAGACTTG-T 54
Query 61 GAGTCCCCTGTATCTTCAACAACCTCGTCTTC-AAAACTTTATCCAGAGACAT 112
|| ||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 53 GATTCCCCTGTATCTTCAACAACCTCGTCTTCCAAAACTTTATCCAAAGACAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147641313249
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5