BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487478
Length=3020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06680.1 | Symbols: SPC98, ATGCP3, ATSPC98, GCP3 | spindle p... 4822 0.0
AT1G37010.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 159 1e-37
> AT5G06680.1 | Symbols: SPC98, ATGCP3, ATSPC98, GCP3 | spindle
pole body component 98 | chr5:2056587-2059787 FORWARD LENGTH=3089
Length=3089
Score = 4822 bits (2611), Expect = 0.0
Identities = 2879/3006 (96%), Gaps = 28/3006 (1%)
Strand=Plus/Plus
Query 24 aaaaaaaGTTGAAATCGAATCGAAGAAGATaaaaaaaGGCAAAAGCTT-ACATTG---AT 79
|||||||| |||||||||| |||||||| |||||||||||||||||| | |||| ||
Sbjct 101 AAAAAAAGGTGAAATCGAA--GAAGAAGA-AAAAAAAGGCAAAAGCTTGA-ATTGATTAT 156
Query 80 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 216
Query 140 CTCCCAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CTCACAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 276
Query 200 TCGTTACGCCTTTCGTATCCTCTCTAGCCGCCTTACTCCCTCCGTCCTCCCTGACGCCAC 259
||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 277 TCGTTACGCTTTTCGTATCCTCTCTAGTCGTCTTACTCCTTCCGTCCTCCCTGACGCCAC 336
Query 260 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 396
Query 320 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAGACTGGACCAGGCAGTGTCAATAA 379
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 397 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAAACTGGACCTGGCAGTGTCAATAA 456
Query 380 TAAATGGGCTCTTGTTTATTTGCTTAAAATCGTTTCTGATGATCGTAAATCGGCTATAAA 439
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 457 CAAATGGGCTCTTGTTTATTTGCTTAAAATTGTTTCTGACGATCGTAAATCGGCTATAAA 516
Query 440 TGGTCTTGATTCGTCGGTTTTGTTACCTAATTTGGGGCTTGGTGATGCTGGTAAT-GTGT 498
|||||||||||| |||||||||||||||||||||||| |||||||| |||||||| | ||
Sbjct 517 TGGTCTTGATTCCTCGGTTTTGTTACCTAATTTGGGGATTGGTGATACTGGTAATGGGGT 576
Query 499 TTTCGCGCCGTGGGGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 558
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TTT-GAGCCGTGGAGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 635
Query 559 AAGATCCTGAGAATTTGCGAGATATTGCGTTTAGAGAGTATGCGGTTTTGGTTAAGGAAG 618
||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 636 AAGATCCTGAGAATTTGAGGGATATTGCGTTTAGAGAGTATGCCATTTTGGTTAAGGAAG 695
Query 619 AGAATGAAGTGACTGAGGAGGTTCTAGTTAGGGATGTTTTGTATGCTTCCCAAGGTATTG 678
||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||
Sbjct 696 AGAATGAAGTGACGGAGGAGGTTCTAGTGAGGGATGTTTTGTATGCTAGCCAAGGAATTG 755
Query 679 ATGGGAAATATGTGAAATTTAACAGCGAAATTGACGGTTATGCGGTGCAGGAGTCTGTTA 738
||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 756 ATGGGAAATATGTCAAATTTAACAGTGAAATCGACGGTTATGCCGTGCAGGAGTCTGTTA 815
Query 739 AGGTGCCTCGAGCTACTAGGATTATGGTACGTATGCTCTCTGAGCTTGGCTGGTTGTTTA 798
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 816 AGGTGCCTCGAGCTACGAGGATTATGGTTCGTATGCTCTCTGAGCTTGGTTGGTTGTTTA 875
Query 799 GAAAGGTTAAGACTTTTATAACCGAGAGTATGGATCGGTTTCCAGCTGAGGAAGTGGGAA 858
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 876 GAAAGGTTAAGACTTTTATAACTGAGAGTATGGATCGGTTTCCAGCTGAGGATGTGGGAA 935
Query 859 CTGTTGGGCAAGCGTTTTGTGCGGCATTGCAAGATGAGCTCTCTGATTATTATAAGTTAT 918
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 936 CTGTTGGGCAAGCGTTTTGTGCGGCGTTGCAAGATGAGCTTTCTGATTATTATAAGTTGT 995
Query 919 TGGCTGTGCTTGAAGCACAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCTAGCT 978
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 996 TAGCTGTGCTAGAAGCGCAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCAAGCT 1055
Query 979 CAAGTAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1038
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CAAACAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1115
Query 1039 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTACTGAGAGGTGGGGCGATGGCTG 1098
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1116 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTTTTGAGAGGTGGGGCGATGGCTG 1175
Query 1099 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAATC 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1176 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAGTT 1235
Query 1159 TGCTCCGATGTGTGTGTTCTCCGCTGTTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGAG 1218
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1236 TGCTTCGATGTGTGTGTTCTCCGCTATTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGGG 1295
Query 1219 AGTTGGAAGATACTTTTGGTGAATTCTTTATCGTTGGTCAGCCTGTTAAAGTCGATTTGC 1278
||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 1296 AGTTGGAAGATACTTTTGGTGAATTCTTTGTCGTAGGTCAGCCGGTTAAAGTCGATTTGC 1355
Query 1279 TTTGGAGAGAAGGTTATAAGCTCCACCCAGCGATGCTTCCGTCTTTTATTTCACCGAGTC 1338
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1356 TTTGGAGAGAAGGCTATAAGCTCCACCCAGCAATGCTTCCATCTTTTATTTCACCAAGTC 1415
Query 1339 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1475
Query 1399 ATCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCATCTGGGACGACGACTAGGC 1458
| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1476 ACCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCCTCTGGGACAACAACTAGGC 1535
Query 1459 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTTACCGAGGCAGCAA 1518
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1536 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTAACCGAGGCAGCAA 1595
Query 1519 AAAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTCAAGGAGCATT 1578
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1596 AGAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTTAAGGAGCATT 1655
Query 1579 GTCTTGCCATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTTCAATACTTGATGG 1638
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1656 GTCTTGCGATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTCCAGTACTTGATGG 1715
Query 1639 ATATTGTAGGACCTAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAACTAGCTG 1698
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1716 ATATTGTAGGACCCAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAGCTAGCTG 1775
Query 1699 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCGCAGTATGATGACCGTGACATGCTAG 1758
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1776 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCACAGTATGATGACCGTGACATGCTAG 1835
Query 1759 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1895
Query 1819 CATTGGAATATGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCCA 1878
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1896 CATTGGAATACGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCTA 1955
Query 1879 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 2015
Query 1939 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTCGTTAAGCTCCAAA 1998
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2016 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTTGTTAAGCTTCAAA 2075
Query 1999 CTTCGGTGAAGTTGCAATTGCTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2058
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 GTTCGGTGAAGTTGCAATTACTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2135
Query 2059 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAAGTATTGGAGGTGTCAT 2118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 2136 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAGGTATTGGAGGTATCAT 2195
Query 2119 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACTTGGATGATCTCTTGGCAGCAC 2178
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 2196 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACCTCGATGATCTCTTGGCAGCGC 2255
Query 2179 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2315
Query 2239 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2316 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2375
Query 2299 GTTTGTATGAAGGAATTTACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGaaaaaa 2358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2376 GTTTGTATGAAGGAATTCACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGAAAAAA 2435
Query 2359 aCAAATCGCTAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2418
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2436 ACAAATCGCAAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2495
Query 2419 CGGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 CTGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2555
Query 2479 CTTCACTCGATGGATTCCTATCTCTTTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2538
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2556 CGTCACTTGATGGATTCCTATCTCTCTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2615
Query 2539 TCTTCTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 TCTTTTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2675
Query 2599 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATAGCAAGAGAAGAAGACA 2658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2676 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATCGCAAGAGAAGAAGACA 2735
Query 2659 TGATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTC-C-TGAACCAGGGATGCA 2716
| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2736 TTATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTCTCCTGAACCAGGGATGCA 2795
Query 2717 GAGGTTCTATTCTTAAAATCTAGGTGCGTGGAAGAATCT-TT-CTTATTTACGAGACTGC 2774
|||||||| |||||||||||||||||||||| ||||||| || |||||||| ||||||||
Sbjct 2796 GAGGTTCTTTTCTTAAAATCTAGGTGCGTGGGAGAATCTGTTTCTTATTTA-GAGACTGC 2854
Query 2775 CTCATAGATTTTGTGTCTTTTGCACAGATTGCtttttttAAATGGCTTGTTTCAAAGTTT 2834
|||||||||||| ||||||||||| |||||| |||||| || ||||||||||||||||||
Sbjct 2855 CTCATAGATTTTCTGTCTTTTGCATAGATTG-TTTTTTCAA-TGGCTTGTTTCAAAGTTT 2912
Query 2835 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2913 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2972
Query 2895 GCTATCAGTCTGATGATCTCCAGCTTTAGtttttttttttttttACGTTCCTCCATGTGG 2954
||||| ||||||||||||||||||||||||||||||| || | ||| | ||||
Sbjct 2973 GCTATAAGTCTGATGATCTCCAGCTTTAGTTTTTTTTCTT-----C-TTC-T----GTGG 3021
Query 2955 TTCACTGATTTGTATGATTTGTTTTGTGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3014
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3022 TTCACTGATTTGTATGATTTGTTTTATGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3081
Query 3015 CTTCAT 3020
||||||
Sbjct 3082 CTTCAT 3087
> AT1G37010.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: spindle pole body component 98 (TAIR:AT5G06680.1);
Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:14040918-14041227
FORWARD LENGTH=264
Length=264
Score = 159 bits (86), Expect = 1e-37
Identities = 128/148 (86%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 469 ATTTGGGGCTTGGTGATGCTGGTAATGTG-TTTTCGCGCCGTGGGGA-GGCTAAGAAGAA 526
|||||||| | ||||| |||||||| | |||| ||||| || | | |||||||||
Sbjct 116 ATTTGGGGATAAGTGATAATGGTAATGGGCTTTT-AAGCCGT-GGAATAGTTAAGAAGAA 173
Query 527 GGATTGGAGTAATGGGGTTTTGTTGGTTAGTAAAGATCCTGAGAATTTGCGAGATATTGC 586
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 174 GGATTGGAGTAATGGAGTTTTGTTGGTTAGTAAAGATCCTGAGAATTTGAGGGATATTGC 233
Query 587 GTTTAGAGAGTATGCGGTTTTGGTTAAG 614
||||||| |||||||| |||||||||||
Sbjct 234 GTTTAGACAGTATGCGATTTTGGTTAAG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150149660399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5