BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487478 Length=3020 Score E Sequences producing significant alignments: (Bits) Value AT5G06680.1 | Symbols: SPC98, ATGCP3, ATSPC98, GCP3 | spindle p... 4822 0.0 AT1G37010.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 159 1e-37 > AT5G06680.1 | Symbols: SPC98, ATGCP3, ATSPC98, GCP3 | spindle pole body component 98 | chr5:2056587-2059787 FORWARD LENGTH=3089 Length=3089 Score = 4822 bits (2611), Expect = 0.0 Identities = 2879/3006 (96%), Gaps = 28/3006 (1%) Strand=Plus/Plus Query 24 aaaaaaaGTTGAAATCGAATCGAAGAAGATaaaaaaaGGCAAAAGCTT-ACATTG---AT 79 |||||||| |||||||||| |||||||| |||||||||||||||||| | |||| || Sbjct 101 AAAAAAAGGTGAAATCGAA--GAAGAAGA-AAAAAAAGGCAAAAGCTTGA-ATTGATTAT 156 Query 80 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 GGAAGACGACGATCAGCAGAAGGCTGCAGATCTAGTACAAGAGCTTGTTCTTCGTCTCGT 216 Query 140 CTCCCAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 199 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 CTCACAAAACCCTCAAACCCCTAATCTCGATCCCAATTCTCCCGCCTTCCTCAAAACCCT 276 Query 200 TCGTTACGCCTTTCGTATCCTCTCTAGCCGCCTTACTCCCTCCGTCCTCCCTGACGCCAC 259 ||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 277 TCGTTACGCTTTTCGTATCCTCTCTAGTCGTCTTACTCCTTCCGTCCTCCCTGACGCCAC 336 Query 260 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 CGCTATCGCTGAGTCTCTCAAACGCCGTCTCGCTACTCAGGGTAAGTCCTCCGACGCACT 396 Query 320 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAGACTGGACCAGGCAGTGTCAATAA 379 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 397 CGCTTTTGCCGATCTCTACACTAAGTTCGCTTCCAAAACTGGACCTGGCAGTGTCAATAA 456 Query 380 TAAATGGGCTCTTGTTTATTTGCTTAAAATCGTTTCTGATGATCGTAAATCGGCTATAAA 439 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 457 CAAATGGGCTCTTGTTTATTTGCTTAAAATTGTTTCTGACGATCGTAAATCGGCTATAAA 516 Query 440 TGGTCTTGATTCGTCGGTTTTGTTACCTAATTTGGGGCTTGGTGATGCTGGTAAT-GTGT 498 |||||||||||| |||||||||||||||||||||||| |||||||| |||||||| | || Sbjct 517 TGGTCTTGATTCCTCGGTTTTGTTACCTAATTTGGGGATTGGTGATACTGGTAATGGGGT 576 Query 499 TTTCGCGCCGTGGGGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 558 ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 TTT-GAGCCGTGGAGAGGCTAAGAAGAAGGATTGGAGTAATGGGGTTTTGTTGGTTAGTA 635 Query 559 AAGATCCTGAGAATTTGCGAGATATTGCGTTTAGAGAGTATGCGGTTTTGGTTAAGGAAG 618 ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct 636 AAGATCCTGAGAATTTGAGGGATATTGCGTTTAGAGAGTATGCCATTTTGGTTAAGGAAG 695 Query 619 AGAATGAAGTGACTGAGGAGGTTCTAGTTAGGGATGTTTTGTATGCTTCCCAAGGTATTG 678 ||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||| Sbjct 696 AGAATGAAGTGACGGAGGAGGTTCTAGTGAGGGATGTTTTGTATGCTAGCCAAGGAATTG 755 Query 679 ATGGGAAATATGTGAAATTTAACAGCGAAATTGACGGTTATGCGGTGCAGGAGTCTGTTA 738 ||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 756 ATGGGAAATATGTCAAATTTAACAGTGAAATCGACGGTTATGCCGTGCAGGAGTCTGTTA 815 Query 739 AGGTGCCTCGAGCTACTAGGATTATGGTACGTATGCTCTCTGAGCTTGGCTGGTTGTTTA 798 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct 816 AGGTGCCTCGAGCTACGAGGATTATGGTTCGTATGCTCTCTGAGCTTGGTTGGTTGTTTA 875 Query 799 GAAAGGTTAAGACTTTTATAACCGAGAGTATGGATCGGTTTCCAGCTGAGGAAGTGGGAA 858 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 876 GAAAGGTTAAGACTTTTATAACTGAGAGTATGGATCGGTTTCCAGCTGAGGATGTGGGAA 935 Query 859 CTGTTGGGCAAGCGTTTTGTGCGGCATTGCAAGATGAGCTCTCTGATTATTATAAGTTAT 918 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 936 CTGTTGGGCAAGCGTTTTGTGCGGCGTTGCAAGATGAGCTTTCTGATTATTATAAGTTGT 995 Query 919 TGGCTGTGCTTGAAGCACAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCTAGCT 978 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 996 TAGCTGTGCTAGAAGCGCAGGCCATGAATCCTATTCCTTTGGTTTCTGAATCAGCAAGCT 1055 Query 979 CAAGTAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1038 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1056 CAAACAATTACCTTTCTTTGAGGAGGTTGTCGGTATGGTTTGCGGAGCCTATGGTGAAAA 1115 Query 1039 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTACTGAGAGGTGGGGCGATGGCTG 1098 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1116 TGAGACTGATGGCTGTTTTGGTTGACAAGTGTAAGGTTTTGAGAGGTGGGGCGATGGCTG 1175 Query 1099 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAATC 1158 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1176 GGGCTATCCATTTGCACGCACAGCATGGTGATCCGCTTGTTCATGATTTTATGATGAGTT 1235 Query 1159 TGCTCCGATGTGTGTGTTCTCCGCTGTTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGAG 1218 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1236 TGCTTCGATGTGTGTGTTCTCCGCTATTTGAAATGGTGAGAAGTTGGGTTCTAGAAGGGG 1295 Query 1219 AGTTGGAAGATACTTTTGGTGAATTCTTTATCGTTGGTCAGCCTGTTAAAGTCGATTTGC 1278 ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| Sbjct 1296 AGTTGGAAGATACTTTTGGTGAATTCTTTGTCGTAGGTCAGCCGGTTAAAGTCGATTTGC 1355 Query 1279 TTTGGAGAGAAGGTTATAAGCTCCACCCAGCGATGCTTCCGTCTTTTATTTCACCGAGTC 1338 ||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 1356 TTTGGAGAGAAGGCTATAAGCTCCACCCAGCAATGCTTCCATCTTTTATTTCACCAAGTC 1415 Query 1339 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1416 TAGCTCAGAGAATTCTGAGAACTGGGAAATCTATAAACTTTCTTCGTGTTTGCTGTGATG 1475 Query 1399 ATCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCATCTGGGACGACGACTAGGC 1458 | |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 1476 ACCACGGGTGGGCTGATGCAGCTTCAGAAGCAGCAGCTGCCTCTGGGACAACAACTAGGC 1535 Query 1459 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTTACCGAGGCAGCAA 1518 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1536 GAGGAGGTCTCGGGTATGGTGAAACAGATGCACTTGAACATCTTGTAACCGAGGCAGCAA 1595 Query 1519 AAAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTCAAGGAGCATT 1578 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1596 AGAGAATCGACAAGCATCTGTTGGATGTTCTATATAAGAGATATAAATTTAAGGAGCATT 1655 Query 1579 GTCTTGCCATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTTCAATACTTGATGG 1638 ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1656 GTCTTGCGATTAAGCGTTATTTACTACTTGGTCAAGGTGATTTTGTCCAGTACTTGATGG 1715 Query 1639 ATATTGTAGGACCTAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAACTAGCTG 1698 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1716 ATATTGTAGGACCCAAGCTTTCTGAGCCAGCCAATAATATTAGTTCATTTGAGCTAGCTG 1775 Query 1699 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCGCAGTATGATGACCGTGACATGCTAG 1758 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1776 GGTTTCTTGAGGCTGCAATACGAGCATCAAATGCACAGTATGATGACCGTGACATGCTAG 1835 Query 1759 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1836 ACAGATTGAGAGTGAAGATGATGCCTCATGGCAGTGGAGACAGAGGCTGGGATGTATTCT 1895 Query 1819 CATTGGAATATGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCCA 1878 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1896 CATTGGAATACGAGGCAAGGGTTCCATTAGATACCGTGTTTACTGAGTCTGTTTTGTCTA 1955 Query 1879 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 1938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1956 AATACCTGAGAGTGTTCAATTTTCTCTGGAAGTTGAAACGGGTAGAGCATGCTCTTATCG 2015 Query 1939 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTCGTTAAGCTCCAAA 1998 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2016 GAATTTGGAAGACCATGAAACCAAATTGCATCACTTCGAACTCATTTGTTAAGCTTCAAA 2075 Query 1999 CTTCGGTGAAGTTGCAATTGCTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2058 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2076 GTTCGGTGAAGTTGCAATTACTCTCAGCCCTGAGGCGGTGCCAGGTCCTTTGGAATGAAA 2135 Query 2059 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAAGTATTGGAGGTGTCAT 2118 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 2136 TGAACCATTTTGTTACTAACTTTCAGTATTACATCATGTTTGAGGTATTGGAGGTATCAT 2195 Query 2119 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACTTGGATGATCTCTTGGCAGCAC 2178 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | Sbjct 2196 GGTCTAATTTCTCAAAAGAGATGGAAGCTGCTAAAGACCTCGATGATCTCTTGGCAGCGC 2255 Query 2179 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2256 ATGAGAAGTACCTCAACGCCATTGTTGGAAAATCTCTTCTGGGTGAACAGTCACAGACCA 2315 Query 2239 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2316 TCCGCGAATCACTTTTCGTCCTGTTTGAGCTTATATTACGGTTCAGGAGTCATGCAGATC 2375 Query 2299 GTTTGTATGAAGGAATTTACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGaaaaaa 2358 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2376 GTTTGTATGAAGGAATTCACGAGTTGCAAATAAGATCTAAAGAATCAGGACGAGAAAAAA 2435 Query 2359 aCAAATCGCTAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2418 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2436 ACAAATCGCAAGAGCCCGGTTCATGGATCAGTGAGGGTAGGAAGGGCTTAACACAGCGTG 2495 Query 2419 CGGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2478 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2496 CTGGAGAATTTCTACAAAGCATGAGTCAAGATATGGACAGTATTGCAAAGGAATACACAT 2555 Query 2479 CTTCACTCGATGGATTCCTATCTCTTTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2538 | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2556 CGTCACTTGATGGATTCCTATCTCTCTTGCCTCTGCAACAATCTGTAGATCTCAAGTTTC 2615 Query 2539 TCTTCTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2598 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2616 TCTTTTTCCGGCTTGACTTCACTGAGTTCTACAGCCGATTGCATTCCAAAGGATAAGAAA 2675 Query 2599 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATAGCAAGAGAAGAAGACA 2658 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2676 GTTGAAAGAGTATCAGGTTTAGTTGAAAAGCATATTGCACAATCGCAAGAGAAGAAGACA 2735 Query 2659 TGATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTC-C-TGAACCAGGGATGCA 2716 | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 2736 TTATCTACGTCTTTCACTAACCGCTGACTGCAGCATGGGCTCTCCTGAACCAGGGATGCA 2795 Query 2717 GAGGTTCTATTCTTAAAATCTAGGTGCGTGGAAGAATCT-TT-CTTATTTACGAGACTGC 2774 |||||||| |||||||||||||||||||||| ||||||| || |||||||| |||||||| Sbjct 2796 GAGGTTCTTTTCTTAAAATCTAGGTGCGTGGGAGAATCTGTTTCTTATTTA-GAGACTGC 2854 Query 2775 CTCATAGATTTTGTGTCTTTTGCACAGATTGCtttttttAAATGGCTTGTTTCAAAGTTT 2834 |||||||||||| ||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 2855 CTCATAGATTTTCTGTCTTTTGCATAGATTG-TTTTTTCAA-TGGCTTGTTTCAAAGTTT 2912 Query 2835 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2913 AGGATTGGGAAACAGATTCTTTGTGTTGGTAAATTGGGGAAGGTTTGTGTTTGAGTTTGT 2972 Query 2895 GCTATCAGTCTGATGATCTCCAGCTTTAGtttttttttttttttACGTTCCTCCATGTGG 2954 ||||| ||||||||||||||||||||||||||||||| || | ||| | |||| Sbjct 2973 GCTATAAGTCTGATGATCTCCAGCTTTAGTTTTTTTTCTT-----C-TTC-T----GTGG 3021 Query 2955 TTCACTGATTTGTATGATTTGTTTTGTGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3014 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3022 TTCACTGATTTGTATGATTTGTTTTATGACTTGGTTGATATAAGAAGGAATCAGTTGCTT 3081 Query 3015 CTTCAT 3020 |||||| Sbjct 3082 CTTCAT 3087 > AT1G37010.1 | Symbols: | BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:14040918-14041227 FORWARD LENGTH=264 Length=264 Score = 159 bits (86), Expect = 1e-37 Identities = 128/148 (86%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 469 ATTTGGGGCTTGGTGATGCTGGTAATGTG-TTTTCGCGCCGTGGGGA-GGCTAAGAAGAA 526 |||||||| | ||||| |||||||| | |||| ||||| || | | ||||||||| Sbjct 116 ATTTGGGGATAAGTGATAATGGTAATGGGCTTTT-AAGCCGT-GGAATAGTTAAGAAGAA 173 Query 527 GGATTGGAGTAATGGGGTTTTGTTGGTTAGTAAAGATCCTGAGAATTTGCGAGATATTGC 586 ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 174 GGATTGGAGTAATGGAGTTTTGTTGGTTAGTAAAGATCCTGAGAATTTGAGGGATATTGC 233 Query 587 GTTTAGAGAGTATGCGGTTTTGGTTAAG 614 ||||||| |||||||| ||||||||||| Sbjct 234 GTTTAGACAGTATGCGATTTTGGTTAAG 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 150149660399 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5