BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487479
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06690.2 | Symbols: WCRKC1 | WCRKC thioredoxin 1 | chr5:2060... 867 0.0
> AT5G06690.2 | Symbols: WCRKC1 | WCRKC thioredoxin 1 | chr5:2060503-2061956
REVERSE LENGTH=994
Length=994
Score = 867 bits (469), Expect = 0.0
Identities = 508/526 (97%), Gaps = 5/526 (1%)
Strand=Plus/Plus
Query 1 ATGGCATATGAAAACTTAAAAATATCTCATCATATATCTTCATCGTC-AAAAATTTACTG 59
||||||| |||||||||||||||||||| ||| |||||||||||| | ||||||||||||
Sbjct 1 ATGGCATTTGAAAACTTAAAAATATCTCGTCACATATCTTCATCGACAAAAAATTTACTG 60
Query 60 AAAGC-aaaaaaaCTAATGGCAGCTTTGGCATCAAACCCTCAAATGCTAACTAGACAAGC 118
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAAGCGAAAAAAA-TAATGGCAGCTTTGGCATCAAACCCCCAAATGCTAACTAGACAAGC 119
Query 119 CCACGGTAACAAGAAGGAACAATTTTGGAGGAAAGAGAGTTTGAATTTGGAGAAGAAGTG 178
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 120 TCACGGTAACAAGAAGGAACAATTGTGGAGGAAAGAGAGTTTAAATTTGGAGAAGAAGTG 179
Query 179 TGGGTTTTGTGTGAGTGTTTACAATAATGAAAAGCTTGGGAGGCCACATATGGAGAAAGA 238
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 180 TGGGTTTTGTGTGAGCGTTTACAGTAATGAAAAGCTTGGGAGGTCACATATGGAGAAAGA 239
Query 239 GTGGAGACTAAAAGCCTTTTGGTCAAACATAGCTCAGCCTACGACTTTGGAGATGGAACC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGGAGACTAAAAGCCTTTTGGTCAAACATAGCTCAGCCTACGACTTTGGAGATGGAACC 299
Query 299 CATTAACAACGTTGAAGAACTCGATGCTGTTCTCTCTCACGCACGCCAACTCTCTCAGCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATTAACAACGTTGAAGAACTCGATGCTGTTCTCTCTCACGCACGCCAACTCTCTCAGCC 359
Query 359 TATCATCATCGAATGGATGGCTTCTTGGTGTCGAAAATGTATTTACTTGAAGCCGAAGTT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TATCATCATCGAATGGATGGCTTCTTGGTGTCGAAAATGTATTTACTTGAAGCCTAAGTT 419
Query 419 GGAGAAATTAGCTGCAGAATATAATAACCGAGCAAAGTTTTACTATGTGGATGTAAACAA 478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAGAAATTAGCGGCAGAATATAATAACCGAGCAAAGTTTTACTATGTGGATGTAAACAA 479
Query 479 GGTCCCTCAAACCTTGGTGAAACGTGGAAACATTTCG--AAAATGC 522
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 GGTCCCTCAAACCTTGGTGAAACGTGGAAACATTTCGGTAAAATGC 525
Score = 224 bits (121), Expect = 9e-58
Identities = 211/249 (85%), Gaps = 27/249 (11%)
Strand=Plus/Plus
Query 531 CAGTTATGGAAGGAAGATGAGATGAAAGAAGAGGTGATAGGAGGTCACAAAGGATGGCTT 590
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 745 CAGTTATGGAAGGAAGATGAGATGAAAGAGGAGGTGATTGGAGGTCACAAAGGATGGCTT 804
Query 591 GTCATCGAAGAAGTTAGAGAATTGATCAACAAATATGTCTAGTTCACA-tttttttcc-t 648
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||| | |
Sbjct 805 GTCATCGAAGAAGTTAGAGAATTGATCAACAAATTTGTCTAGTTCTCTCTTTTTTTTCAT 864
Query 649 t-cct---ttttttttttCTCT-AA------T-A-T--GTACAGTCAGTTTTCTTATTTA 693
| ||| |||||||||||| | || | | | |||||||||||||||||||||
Sbjct 865 TTCCTACCTTTTTTTTTTCTTTTAAAAAAAATTAATATGTACAGTCAGTTTTCTTATTTT 924
Query 694 CTTTATTTACAGTCTATATCCAATTTCAAACTTAAAAACTC-TTTTTTCGGTAATCAAGA 752
|||| |||| | | | |||||||||||||||||||| |||||| | |||||||||
Sbjct 925 CTTTCTTTA---T--A---C-AATTTCAAACTTAAAAACTCCTTTTTTTGATAATCAAGA 975
Query 753 AATTTCACA 761
|||||||||
Sbjct 976 AATTTCACA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36972332192
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5