BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487481
Length=2081
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06700.1 | Symbols: TBR | Plant protein of unknown function ... 3121 0.0
> AT5G06700.1 | Symbols: TBR | Plant protein of unknown function
(DUF828) | chr5:2063487-2066039 FORWARD LENGTH=2207
Length=2207
Score = 3121 bits (1690), Expect = 0.0
Identities = 1974/2106 (94%), Gaps = 39/2106 (2%)
Strand=Plus/Plus
Query 1 ACACCACATTCCCCACTACTAGTGCCCCCTCCACCTCTCCGTCTATGGCGTCAGACGCCG 60
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 109 ACACCACATTCCCCACTACTAGTG-ACCATCCACCTCTCCGTCTATGGCGTCAGACGCCG 167
Query 61 TTAAGTATATGCCAATCCACGGCGGAGGaacaacaacaacaacaacCGCCGCCGACATCA 120
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 168 TTAAGTATATGCCAATCCACGGCGGAGG---AACAACAGCAACAACCGCCGCCGACATCA 224
Query 121 AGAGCTTCTTCTCTGCTTTGAAACCCaaaaaaaCCTCAACTTTCGCTTACGCTTTTGTCA 180
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 225 AGAGCTTCTTCTCCGCTCTAAAACCCAAAAAAACCTCAACTTTCGCTTACGCTTTCGTCA 284
Query 181 TAACCTTCGTCTCTTTTACTCTGTTTTTTGCTTTTAGTCCTTCTCCAAACTCTTCTTCTC 240
||||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||
Sbjct 285 TAACCTTTGTCTCATTCACTCTCTTCTTTGCTTTTAGTCCTTCTCCAAACTCATCTTCTC 344
Query 241 CTTGGTTCTCTAACATCTTCACTTCCTCCTCCACAACCACAACTTCGGTATCAGACAACA 300
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 345 CTTGGTTCTCTAACATCTTCACTTCCTCCTCCACAACCACAA---C--T-TCAGACAACA 398
Query 301 CTTCCGGATCTCAGTTCTCTTCAATTTTCTCTTATATTCTTCCCAATGTCACTACAACCA 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 399 CTTCCGGATCTCAGTTCTCTTCAATTTTCTCATATATTCTTCCCAATGTCACTTCAACCA 458
Query 361 AACCCACCAATAGATCCAGTGACGCTACAGATCCTATCTCTGTTAACGCCACTTCTCCGT 420
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 459 AACCCACCAATAGATCCAGTGACGCCACAGATTCTCTCTCTGTTAACGCCACTTCTCCAC 518
Query 421 CTCTCAATTCGAATTCCAAAAACGGTACTTTACAAGCACCGGCGCCGGAAACTCATACTC 480
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 519 CTCTCAATTCGAATTCCAAAAACGGAACTTTACAAACACCGGCGCCGGAAACTCACACTC 578
Query 481 CGATTGCTAAAAACACAACCTTTGAGTCTCCGATCGTAAACGGAACCAACCCAGTTGCAA 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 579 CGGTTGCTAAAAACACAACCTTTGAGTCTCCGATCGTAAACGGAACCAACCCAGATGCAA 638
Query 541 AGAACAACACTTTATCTCATCCTCTGCTTTCAGACAAATCTTCAACGACGGGATCGAATA 600
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AGAACAACACTTCATCTCATCCTCTGCTTTCAGACAAATCTTCAACGACGGGATCGAATA 698
Query 601 ATCAGTCACGGACCACCAG-CGATACTGAAACCGTGAAGAGAAACCAGACGACAGCTCCG 659
||||||||||||||||| | |||||||||||||||||| |||||||| || ||| |||||
Sbjct 699 ATCAGTCACGGACCACC-GCCGATACTGAAACCGTGAATAGAAACCAAACAACATCTCCG 757
Query 660 GTGCCGTCAAAATCACCGGTGTCGGTGGATCTGAAGGCCAATTCCAGTTCCAATTCATCA 719
| |||||| ||| |||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 758 GCGCCGTCGAAAGCACCCGTGTCGGTAGATCTGAAGACCAATTCCAGTTCCAATTCATCA 817
Query 720 ACTGCTTCTTCTACACCGGAAAAGCAGACTAAAAGCGTTGATTTGGTTTCGTCGGTGAAG 779
|||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 818 ACTGCTTCGTCTACACCGAAAAAGCAGACTAAAACCGTTGATTTGGTTTCGTCGGTGAAG 877
Query 780 CAAGAGATCGAGAAATGGAGTGAATCTCTGAAAAATTGCGAGTTCTTCGACGGTGAGTGG 839
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |||
Sbjct 878 CAAGAGATCGAGAAATGGAGTGAATCTTTGAAGAATTGTGAGTTCTTCGACGGTGAATGG 937
Query 840 ATCAAAGATGATTCGTACCCGCTTTATAAACCCGGTTCGTGTAAGCTTATCGATGAACAG 899
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 938 ATCAAAGATGATTCGTATCCGCTTTATAAACCTGGTTCGTGTAATCTTATCGATGAACAG 997
Query 900 TTCAATTGTATTTCAAACGGAAGACCCGACAAAGATTTCCAGAAATTGAAGTGGAAACCT 959
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 998 TTCAATTGTATTACCAACGGAAGACCAGACAAAGATTTCCAGAAATTGAAGTGGAAACCT 1057
Query 960 AAGAAATGTAGTTTACCAAGGTTAAATGGAGCTATTTTGCTGGAGATGCTTAGAGGAAGA 1019
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1058 AAGAAATGTAGTTTACCAAGGTTAAATGGAGCTATATTGTTGGAGATGCTTAGAGGAAGA 1117
Query 1020 AGACTAGTCTTTGTGGGTGATTCTCTAAATAGGAACATGTGGGAATCACTGGTTTGTATT 1079
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1118 AGACTTGTCTTTGTGGGTGATTCACTAAATAGGAACATGTGGGAATCTCTGGTTTGTATT 1177
Query 1080 CTTAAAGGATCAGTGAAAGATGAAACCAAAGTCTATGAGGCTAGAGGAAGACATCATTTT 1139
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1178 CTCAAAGGATCAGTGAAAGATGAGACTAAAGTCTATGAGGCTAGAGGAAGACATCATTTC 1237
Query 1140 CGTGGGGAGGCTGAGTACTCTTTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTT 1199
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CGTGGGGAGGCTGAGTACTCATTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTT 1297
Query 1200 GTTTCACCGTTCTTGGTTCAAGAATGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAG 1259
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1298 GTTTCACCCTTCTTGGTTCAAGAGTGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAG 1357
Query 1260 ACTTTACGGCTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAGGGAGCGGATATTATT 1319
|||||| || |||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1358 ACTTTAAGGTTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAAGGAGCTGATGTTATT 1417
Query 1320 GTATTTAATACCGGACATTGGTGGACTCACGAGAAAACATCTAAAGGGGAGGATTATTAT 1379
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1418 GTCTTTAATACCGGACATTGGTGGACTCATGAGAAAACATCCAAAGGGGAGGATTATTAT 1477
Query 1380 CAAGAAGGAAGCAATGTTTATCACGAACTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTG 1439
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1478 CAAGAAGGAAGTAATGTTTATCATGAACTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTG 1537
Query 1440 ACTACATGGGGTCGATGGGTCGAGAAGAATGTGAATCCTGCAAAGTCCCTCGTTTTCTTT 1499
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1538 ACTACATGGGGTCGATGGGTTGAGAAGAATGTGAATCCGGCAAAGTCCCTCGTTTTCTTT 1597
Query 1500 CGGGGCTACTCCGCCTCCCATTTCAGTGGTGGGCAATGGAACTCAGGAGGAGCATGCGAT 1559
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CGGGGCTATTCCGCATCCCATTTCAGTGGTGGGCAATGGAACTCAGGAGGAGCATGCGAT 1657
Query 1560 AGCGAAACAGAACCGATCAAGAATGATACATACCTAACCCCATACCCGTCTAAAATGAAG 1619
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1658 AGCGAAACAGAACCGATCAAGAACGATACATACCTAACCCCGTACCCGTCTAAAATGAAA 1717
Query 1620 GTGCTTGAGAAAGTGCTAAGAGGTATGAAAACACCCGTCACGTATCTAAACATCACGAGA 1679
||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1718 GTGCTTGAGAAAGTGTTAAGAGGTATGAAAACACCTGTCACTTATCTAAACATCACGAGA 1777
Query 1680 TTAACGGACTACAGGAAGGACGGTCACCCATCAGTATACCGGAAACACAGCTTATCGGAA 1739
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1778 TTAACGGACTACAGGAAGGACGGTCACCCGTCAGTATACCGGAAACAGAGCTTATCGGAA 1837
Query 1740 AAAGAGaaaaaaaCGCCTTTGCTGTACCAAGACTGCAGCCATTGGTGCCT-CCCGGGAGT 1798
||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1838 AAAGAGAAAAAGTCGCCATTGCTGTACCAAGACTGCAGCCATTGGTGCCTCCCCGGG-GT 1896
Query 1799 TCCCGACTCTTGGAATGAAATCCTCTACGCGGAGCTGATCGTCAAACTCAATCAGGTCAG 1858
||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1897 TCCAGACTCTTGGAATGAAATCCTCTACGCTGAGCTGATCGTCAAACTCAATCAGCTCAG 1956
Query 1859 CCAAACACAACGTAAAACTTAAGGTTCTTCCA-CCCCAATACTTGTTTGATCTCAACACT 1917
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1957 CCAAACACAACGAAAAACTTAAGGTTCTTCCACCCCCAATACTTGTTTGATCTCAACACT 2016
Query 1918 TTTACTTTCTATTTTGATGGTAATTGTTGATTATAGAATGTGTAGAGTAAAA--GA---- 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2017 TTTACTTTCTATTTTGATGGTAATTGTTGATTATAGAATGTGTAGAGTAAAAAAGAAAGA 2076
Query 1972 TC-A-----------C-C-CGATATCTTTGTTACCATTGGTT-GTAAATGCTTTTGTCAC 2016
| | | | ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2077 TGGAATATAATGGATCACTCGATATCTTTGTTACTATTGGTTTGTAAATGCTTTTGTCAC 2136
Query 2017 GACGAATACTATATTTAGCTCCAAAGAGAGGTTACATATTCATATTT---ATAATGGAAT 2073
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2137 GACGAATACAATATTTAGCTCCAAAGAGAGGTTACATATTCATATTTCTTATAATGGAAT 2196
Query 2074 TGATTC 2079
||||||
Sbjct 2197 TGATTC 2202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103162119975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5