BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487481 Length=2081 Score E Sequences producing significant alignments: (Bits) Value AT5G06700.1 | Symbols: TBR | Plant protein of unknown function ... 3121 0.0 > AT5G06700.1 | Symbols: TBR | Plant protein of unknown function (DUF828) | chr5:2063487-2066039 FORWARD LENGTH=2207 Length=2207 Score = 3121 bits (1690), Expect = 0.0 Identities = 1974/2106 (94%), Gaps = 39/2106 (2%) Strand=Plus/Plus Query 1 ACACCACATTCCCCACTACTAGTGCCCCCTCCACCTCTCCGTCTATGGCGTCAGACGCCG 60 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 109 ACACCACATTCCCCACTACTAGTG-ACCATCCACCTCTCCGTCTATGGCGTCAGACGCCG 167 Query 61 TTAAGTATATGCCAATCCACGGCGGAGGaacaacaacaacaacaacCGCCGCCGACATCA 120 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 168 TTAAGTATATGCCAATCCACGGCGGAGG---AACAACAGCAACAACCGCCGCCGACATCA 224 Query 121 AGAGCTTCTTCTCTGCTTTGAAACCCaaaaaaaCCTCAACTTTCGCTTACGCTTTTGTCA 180 ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct 225 AGAGCTTCTTCTCCGCTCTAAAACCCAAAAAAACCTCAACTTTCGCTTACGCTTTCGTCA 284 Query 181 TAACCTTCGTCTCTTTTACTCTGTTTTTTGCTTTTAGTCCTTCTCCAAACTCTTCTTCTC 240 ||||||| ||||| || ||||| || |||||||||||||||||||||||||| ||||||| Sbjct 285 TAACCTTTGTCTCATTCACTCTCTTCTTTGCTTTTAGTCCTTCTCCAAACTCATCTTCTC 344 Query 241 CTTGGTTCTCTAACATCTTCACTTCCTCCTCCACAACCACAACTTCGGTATCAGACAACA 300 |||||||||||||||||||||||||||||||||||||||||| | | |||||||||| Sbjct 345 CTTGGTTCTCTAACATCTTCACTTCCTCCTCCACAACCACAA---C--T-TCAGACAACA 398 Query 301 CTTCCGGATCTCAGTTCTCTTCAATTTTCTCTTATATTCTTCCCAATGTCACTACAACCA 360 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 399 CTTCCGGATCTCAGTTCTCTTCAATTTTCTCATATATTCTTCCCAATGTCACTTCAACCA 458 Query 361 AACCCACCAATAGATCCAGTGACGCTACAGATCCTATCTCTGTTAACGCCACTTCTCCGT 420 ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| Sbjct 459 AACCCACCAATAGATCCAGTGACGCCACAGATTCTCTCTCTGTTAACGCCACTTCTCCAC 518 Query 421 CTCTCAATTCGAATTCCAAAAACGGTACTTTACAAGCACCGGCGCCGGAAACTCATACTC 480 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct 519 CTCTCAATTCGAATTCCAAAAACGGAACTTTACAAACACCGGCGCCGGAAACTCACACTC 578 Query 481 CGATTGCTAAAAACACAACCTTTGAGTCTCCGATCGTAAACGGAACCAACCCAGTTGCAA 540 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 579 CGGTTGCTAAAAACACAACCTTTGAGTCTCCGATCGTAAACGGAACCAACCCAGATGCAA 638 Query 541 AGAACAACACTTTATCTCATCCTCTGCTTTCAGACAAATCTTCAACGACGGGATCGAATA 600 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 AGAACAACACTTCATCTCATCCTCTGCTTTCAGACAAATCTTCAACGACGGGATCGAATA 698 Query 601 ATCAGTCACGGACCACCAG-CGATACTGAAACCGTGAAGAGAAACCAGACGACAGCTCCG 659 ||||||||||||||||| | |||||||||||||||||| |||||||| || ||| ||||| Sbjct 699 ATCAGTCACGGACCACC-GCCGATACTGAAACCGTGAATAGAAACCAAACAACATCTCCG 757 Query 660 GTGCCGTCAAAATCACCGGTGTCGGTGGATCTGAAGGCCAATTCCAGTTCCAATTCATCA 719 | |||||| ||| |||| |||||||| ||||||||| ||||||||||||||||||||||| Sbjct 758 GCGCCGTCGAAAGCACCCGTGTCGGTAGATCTGAAGACCAATTCCAGTTCCAATTCATCA 817 Query 720 ACTGCTTCTTCTACACCGGAAAAGCAGACTAAAAGCGTTGATTTGGTTTCGTCGGTGAAG 779 |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 818 ACTGCTTCGTCTACACCGAAAAAGCAGACTAAAACCGTTGATTTGGTTTCGTCGGTGAAG 877 Query 780 CAAGAGATCGAGAAATGGAGTGAATCTCTGAAAAATTGCGAGTTCTTCGACGGTGAGTGG 839 ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| Sbjct 878 CAAGAGATCGAGAAATGGAGTGAATCTTTGAAGAATTGTGAGTTCTTCGACGGTGAATGG 937 Query 840 ATCAAAGATGATTCGTACCCGCTTTATAAACCCGGTTCGTGTAAGCTTATCGATGAACAG 899 ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 938 ATCAAAGATGATTCGTATCCGCTTTATAAACCTGGTTCGTGTAATCTTATCGATGAACAG 997 Query 900 TTCAATTGTATTTCAAACGGAAGACCCGACAAAGATTTCCAGAAATTGAAGTGGAAACCT 959 |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 998 TTCAATTGTATTACCAACGGAAGACCAGACAAAGATTTCCAGAAATTGAAGTGGAAACCT 1057 Query 960 AAGAAATGTAGTTTACCAAGGTTAAATGGAGCTATTTTGCTGGAGATGCTTAGAGGAAGA 1019 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1058 AAGAAATGTAGTTTACCAAGGTTAAATGGAGCTATATTGTTGGAGATGCTTAGAGGAAGA 1117 Query 1020 AGACTAGTCTTTGTGGGTGATTCTCTAAATAGGAACATGTGGGAATCACTGGTTTGTATT 1079 ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1118 AGACTTGTCTTTGTGGGTGATTCACTAAATAGGAACATGTGGGAATCTCTGGTTTGTATT 1177 Query 1080 CTTAAAGGATCAGTGAAAGATGAAACCAAAGTCTATGAGGCTAGAGGAAGACATCATTTT 1139 || |||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1178 CTCAAAGGATCAGTGAAAGATGAGACTAAAGTCTATGAGGCTAGAGGAAGACATCATTTC 1237 Query 1140 CGTGGGGAGGCTGAGTACTCTTTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTT 1199 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1238 CGTGGGGAGGCTGAGTACTCATTCGTCTTCCAAGATTATAACTGCACGGTGGAGTTCTTT 1297 Query 1200 GTTTCACCGTTCTTGGTTCAAGAATGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAG 1259 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1298 GTTTCACCCTTCTTGGTTCAAGAGTGGGAAATTGTAGACAAGAAAGGAACAAAGAAGGAG 1357 Query 1260 ACTTTACGGCTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAGGGAGCGGATATTATT 1319 |||||| || |||||||||||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 1358 ACTTTAAGGTTGGATTTGGTTGGGAAGTCCTCTGAGCAGTACAAAGGAGCTGATGTTATT 1417 Query 1320 GTATTTAATACCGGACATTGGTGGACTCACGAGAAAACATCTAAAGGGGAGGATTATTAT 1379 || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1418 GTCTTTAATACCGGACATTGGTGGACTCATGAGAAAACATCCAAAGGGGAGGATTATTAT 1477 Query 1380 CAAGAAGGAAGCAATGTTTATCACGAACTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTG 1439 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1478 CAAGAAGGAAGTAATGTTTATCATGAACTCGCTGTTCTTGAAGCTTTTCGTAAAGCTTTG 1537 Query 1440 ACTACATGGGGTCGATGGGTCGAGAAGAATGTGAATCCTGCAAAGTCCCTCGTTTTCTTT 1499 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1538 ACTACATGGGGTCGATGGGTTGAGAAGAATGTGAATCCGGCAAAGTCCCTCGTTTTCTTT 1597 Query 1500 CGGGGCTACTCCGCCTCCCATTTCAGTGGTGGGCAATGGAACTCAGGAGGAGCATGCGAT 1559 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1598 CGGGGCTATTCCGCATCCCATTTCAGTGGTGGGCAATGGAACTCAGGAGGAGCATGCGAT 1657 Query 1560 AGCGAAACAGAACCGATCAAGAATGATACATACCTAACCCCATACCCGTCTAAAATGAAG 1619 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1658 AGCGAAACAGAACCGATCAAGAACGATACATACCTAACCCCGTACCCGTCTAAAATGAAA 1717 Query 1620 GTGCTTGAGAAAGTGCTAAGAGGTATGAAAACACCCGTCACGTATCTAAACATCACGAGA 1679 ||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1718 GTGCTTGAGAAAGTGTTAAGAGGTATGAAAACACCTGTCACTTATCTAAACATCACGAGA 1777 Query 1680 TTAACGGACTACAGGAAGGACGGTCACCCATCAGTATACCGGAAACACAGCTTATCGGAA 1739 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1778 TTAACGGACTACAGGAAGGACGGTCACCCGTCAGTATACCGGAAACAGAGCTTATCGGAA 1837 Query 1740 AAAGAGaaaaaaaCGCCTTTGCTGTACCAAGACTGCAGCCATTGGTGCCT-CCCGGGAGT 1798 ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| || Sbjct 1838 AAAGAGAAAAAGTCGCCATTGCTGTACCAAGACTGCAGCCATTGGTGCCTCCCCGGG-GT 1896 Query 1799 TCCCGACTCTTGGAATGAAATCCTCTACGCGGAGCTGATCGTCAAACTCAATCAGGTCAG 1858 ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1897 TCCAGACTCTTGGAATGAAATCCTCTACGCTGAGCTGATCGTCAAACTCAATCAGCTCAG 1956 Query 1859 CCAAACACAACGTAAAACTTAAGGTTCTTCCA-CCCCAATACTTGTTTGATCTCAACACT 1917 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1957 CCAAACACAACGAAAAACTTAAGGTTCTTCCACCCCCAATACTTGTTTGATCTCAACACT 2016 Query 1918 TTTACTTTCTATTTTGATGGTAATTGTTGATTATAGAATGTGTAGAGTAAAA--GA---- 1971 |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2017 TTTACTTTCTATTTTGATGGTAATTGTTGATTATAGAATGTGTAGAGTAAAAAAGAAAGA 2076 Query 1972 TC-A-----------C-C-CGATATCTTTGTTACCATTGGTT-GTAAATGCTTTTGTCAC 2016 | | | | ||||||||||||||| ||||||| ||||||||||||||||| Sbjct 2077 TGGAATATAATGGATCACTCGATATCTTTGTTACTATTGGTTTGTAAATGCTTTTGTCAC 2136 Query 2017 GACGAATACTATATTTAGCTCCAAAGAGAGGTTACATATTCATATTT---ATAATGGAAT 2073 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2137 GACGAATACAATATTTAGCTCCAAAGAGAGGTTACATATTCATATTTCTTATAATGGAAT 2196 Query 2074 TGATTC 2079 |||||| Sbjct 2197 TGATTC 2202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103162119975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5