BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487484
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06720.1 | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077420... 1655 0.0
AT5G06730.1 | Symbols: | Peroxidase superfamily protein | chr5... 1083 0.0
> AT5G06720.1 | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077420-2079005
REVERSE LENGTH=1303
Length=1303
Score = 1655 bits (896), Expect = 0.0
Identities = 1031/1097 (94%), Gaps = 5/1097 (0%)
Strand=Plus/Plus
Query 1 ATGATCAGTCAAGAAATACGCGTTTAATCAACTTTTCCTCTCTATATATACAATTATTTC 60
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||
Sbjct 1 ATGATCAGTCAAGAAATACGCGTTTAATCGACTTTTTCTCTCTATATATACAATTCTTTC 60
Query 61 AAAATGATCAAGCATAGTCATAAGTTCCGCACCAATCAGTGGAAATAACTAATCAAAACT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAATGATCAAACATAGTCATAAGTTCCGCACCAATCAGTGGAAATAACTAATCAAAACT 120
Query 121 CTATATCATGGTTTTCCAAAACCTAATTAATGGCTGTAACAAATCTTCCTACTTGTGATG 180
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGTATCATCGTTTT-CAAAACCTAATTAATGGCTGTAACAAATCTTCCTACTTGTGATG 179
Query 181 GTTTGTTCATCATCGGTCTTATTGTTATCGTTTCTTCAATGTTTAGGACATCATCTGCGC 240
|||||||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 180 GTTTGTTCATTATCAGTCTTATTGTCATCGTTTCTTCAATATTTGGGACATCATCTGCGC 239
Query 241 AACTAAACGCAACGTTTTACTCTGGGACTTG-CCCTAACGCCTCTGCCATCGTACGTC-G 298
||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| | |
Sbjct 240 AACTAAACGCAACATTTTACTCTGGGACTTGTCCC-AACGCCTCTGCCATCGTACG-CAG 297
Query 299 CACTATTCAGCAAGCTCTTCAATCTGATGCAAGAATTGGAGCCAGCCTAATCCGCCTTCA 358
|||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct 298 CACTATTCAGCAAGCTCTTCAATCCGATACAAGAATCGGAGCCAGCCTCATCCGCCTTCA 357
Query 359 TTTTCACGATTGCTTTGTTAATGGCTGTGATGCATCGATCTTGCTTGACGACAGTGGAAG 418
|||||| || || ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 358 TTTTCATGACTGTTTTGTTAATGGATGTGATGCATCGATCTTGCTTGACGACACTGGAAG 417
Query 419 CATCCAGAGCGAGAAGAACGCTGGTCCGAATGCAAACTCAGCTAGAGGGTTCAACGTTGT 478
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 418 CATCCAGAGCGAGAAGAACGCTGGTCCGAATGTAAACTCAGCTAGAGGATTCAACGTTGT 477
Query 479 CGATAATATCAAGACTGCCCTTGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGT 538
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGATAATATCAAGACTGCCCTCGAAAACGCTTGCCCTGGTGTTGTCTCTTGCTCTGACGT 537
Query 539 TTTAGCTCTTGCCTCAGAGGCCTCTGTATCTTTGGCAGGAGGGCCATCATGGACTGTATT 598
|||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 538 TTTAGCCCTTGCCTCTGAGGCTTCTGTGTCTTTGGCAGGAGGGCCATCATGGACTGTATT 597
Query 599 ATTAGGAAGAAGAGATGGTCTCACTGCAAACCTAGCCGGGGCAAATTCGTCCATTCCTTC 658
|||||||||||||||| ||||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 598 ATTAGGAAGAAGAGATAGTCTCACGGCCAACCTCGCCGGTGCAAATTCGTCCATTCCTTC 657
Query 659 TCCGGTCGAAAGTCTTAGCAACATCACATCTAAATTTTCGGCTGTCGGGCTAAATATGAA 718
||| ||||||| || ||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 658 TCCCATCGAAAGCCTAAGCAACATCACATTTAAATTTTCGGCTGTCGGGCTTAATACAAA 717
Query 719 CGATCTAGTTGCCTTATCTGGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTCTTCAA 778
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 CGATCTGGTAGCCTTATCTGGTGCGCATACGTTCGGGCGTGCTCGATGTGGAGTATTCAA 777
Query 779 CAACAGACTATTTAACTTCAGCGGGACAGGAAATCCCGACCCGACTCTAAACTCAACGCT 838
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 778 CAACAGACTATTTAACTTCAGCGGGACAGGAAATCCCGATCCAACTCTAAACTCAACGCT 837
Query 839 TCTCAGCACTCTTCAACAGCTATGTCCTCAAAACGGCAGCGTATCAACGATCACCAATCT 898
||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 838 TCTGAGCACTCTTCAACAGCTATGTCCTCAAAACGGTAGCGCATCAACGATCACCAATCT 897
Query 899 CGATCGGAGCACACCAGATGCGTTCGATAACAATTACTTCACCAACCTTCAGAGCAACAA 958
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 898 TGATTTGAGCACACCAGATGCGTTCGATAACAATTACTTCGCCAACCTTCAGAGCAACGA 957
Query 959 TGGGCTTCTTCAGTCAGACCAAGAGCTATTCTCTACCACCGGTTCATCCACCATCGCGAT 1018
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 TGGACTTCTTCAGTCAGACCAAGAGCTGTTCTCTACCACCGGTTCATCCACCATCGCGAT 1017
Query 1019 TGTTACTTCATTTGCAAGTAACCAGACTCTGTTTTTTCAGGCCTTTGCTCAGTCCATGAT 1078
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 TGTTACTTCGTTCGCAAGTAACCAGACTCTGTTTTTTCAGGCCTTTGCACAGTCCATGAT 1077
Query 1079 CAACATGGGGAATATTA 1095
||| |||||||||||||
Sbjct 1078 CAATATGGGGAATATTA 1094
Score = 189 bits (102), Expect = 5e-47
Identities = 116/122 (95%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1093 TTA-ACTGTAAGAAGGTTAATGGAAGTTGATTTCCTTAAAGCTCCTTTTCTTTGAAAAAA 1151
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1127 TTAGACTGTAAGAAGGTTAATGGAAGTTGATTTCCTTAAAGCTCATTTTCTTTGAAAAAA 1186
Query 1152 CATATTGGCAATCTTTGGTTGAATAATTTTTGTTATCATAATCACATCAAATATGTATTG 1211
| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1187 C--ATTGGCAAGCTTTGGTTGAATAATTTTTGTTATCATAATCACATCAAATCTGTATTG 1244
Query 1212 CA 1213
||
Sbjct 1245 CA 1246
> AT5G06730.1 | Symbols: | Peroxidase superfamily protein | chr5:2079955-2081684
REVERSE LENGTH=1392
Length=1392
Score = 1083 bits (586), Expect = 0.0
Identities = 873/1009 (87%), Gaps = 30/1009 (3%)
Strand=Plus/Plus
Query 102 GAAATAACTAAT-CAAAACTCTATATCATGGT-TTTCCAA-AACCTAATTAATGGCTGTA 158
|||| | ||||| ||||||||| | | || | ||| ||| || || || ||||||||||
Sbjct 19 GAAA-AGCTAATCCAAAACTCT-T-TAAT--TATTTGCAACAA-CTGATCAATGGCTGTA 72
Query 159 ACAA-ATCTTC--CTACTTGTGATGGTTTGTTCATCATCGGTCTTATTGTTATCGTTTCT 215
|||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 73 ACAAGCTCTTCTTCTACTTGTGATGGTTTCTTCATCATCAGCCTTATTGTTATCGTTTCT 132
Query 216 TCAATGTTTAGGACATCATCTGCGCAACTAAACGCAACGTTTTACTCTGGGACTTGCCCT 275
||| ||||| |||||||||||||||| ||||||||||||||||||| || || ||||||
Sbjct 133 TCATTGTTTGGGACATCATCTGCGCAGTTAAACGCAACGTTTTACTCAGGCACATGCCCT 192
Query 276 AACGCCTCTGCCATCGTACGTC-GCACTATTCAGCAAGCTCTTCAATCTGATGCAAGAAT 334
||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||
Sbjct 193 AACGCCTCTGCCATCGTTCG-CAGCACTATTCAGCAAGCTCTTCAATCCGATGCAAGAAT 251
Query 335 TGGAGCCAGCCTAATCCGCCTTCATTTTCACGATTGCTTTGTTAATGGCTGTGATGCATC 394
|||| ||||||||||||||||||||||||||| || ||||||||||| || |||| ||
Sbjct 252 CGGAGGCAGCCTAATCCGCCTTCATTTTCACGACTGTTTTGTTAATGGTTGCGATGGGTC 311
Query 395 GATCTTGCTTGACGACAGTGGAAGCATCCAGAGCGAGAAGAACGCTGGT-CCGAATGCAA 453
| ||||||||||||||| | ||||||||||||||||||||||||| | || |||||||
Sbjct 312 GCTCTTGCTTGACGACACTTCAAGCATCCAGAGCGAGAAGAACGCTCCTGCC-AATGCAA 370
Query 454 ACTCAGCTAGAGGGTTCAACGTTGTCGATAATATCAAGACTGCCCTTGAAAACGCTTGCC 513
||||| ||||||| ||||| |||||||||| ||||||||| ||||| || || ||||| |
Sbjct 371 ACTCAACTAGAGGATTCAATGTTGTCGATAGTATCAAGACAGCCCTCGAGAATGCTTGTC 430
Query 514 CTGGTGTTGTCTCTTGCTCTGACGTTTTAGCTCTTGCCTCAGAGGCCTCTGTATCTTTGG 573
| || |||| |||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 431 CGGGCATTGTTTCTTGCTCTGACATTTTAGCTCTTGCCTCAGAGGCCTCTGTGTCTTTGG 490
Query 574 CAGGAGGGCCATCATGGACTGTATTATTAGGAAGAAGAGATGGTCTCACTGCAAACCTAG 633
||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 491 CAGGAGGACCTTCATGGACTGTGTTATTAGGAAGAAGAGATGGTCTCACCGCAAA-CTTG 549
Query 634 -CCGGGGCAAATTCGTC-CATTCCTTCTCCGGTCGAAAGTCTTAGCAACATCACATCTAA 691
| || || |||||||| | |||| ||||| ||||| | |||| |||||||||||| ||
Sbjct 550 TCTGGAGCCAATTCGTCTC-TTCCCTCTCCCTTCGAAGGCCTTAACAACATCACATCAAA 608
Query 692 ATTT-TCGGCTGTCGGGCTAAATATGAA-CGATCTAGT-TGCCTTATCTGGTGCGCATAC 748
|||| | |||||||||||||| | || |||| |||| | |||| ||||| ||||||||
Sbjct 609 ATTTGT-AGCTGTCGGGCTAAAGA-CAACCGATGTAGTAT-CCTTGTCTGGAGCGCATAC 665
Query 749 GTTCGGGCGTGCTCGATGTGGAGTC-TTCAACAACAGACTATTTAACTTCAGCGGGACAG 807
||| ||||||| || ||| | | | |||||||| |||||||| ||||||| ||||||||
Sbjct 666 GTTTGGGCGTGGTCAATGCGTA-ACGTTCAACAATAGACTATTCAACTTCAACGGGACAG 724
Query 808 GAAATCCCGACCCGACTCTAAACTCAACGCTTCTCAGCACTCTTCAACAGCTATGTCCTC 867
|||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 725 GAAACCCCGACCCGACTCTGAACTCAACACTTCTCAGCAGTCTTCAACAGCTATGTCCTC 784
Query 868 AAAACGGCAGCG-TATCAACGATCACCAATCTCGATCGGAGCACACCAGATGCGTTCGAT 926
||||||||||| || || ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 785 AAAACGGCAGCAATA-CAGGGATCACCAATCTCGATCTGAGCACACCTGATGCGTTCGAT 843
Query 927 AACAATTACTTCACCAACCTTCAGAGCAACAATGGGCTTCTTCAGTCAGACCAAGAGCTA 986
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct 844 AACAATTACTTCACGAACCTTCAGAGTAACAATGGGCTTCTCCAGTCAGACCAGGAACTG 903
Query 987 TTCTCTACCACCGGTTCATCCACCATCGCGATTGTTACTTCATTTGCAAGTAACCAGACT 1046
||||| | |||||||||| ||||| || ||||||||| ||| |||||||||||||||||
Sbjct 904 TTCTCAAACACCGGTTCAGCCACCGTCCCGATTGTTAATTCCTTTGCAAGTAACCAGACC 963
Query 1047 CTGTTTTTTCAGGCCTTTGCTCAGTCCATGATCAACATGGGGAATATTA 1095
||||||||| |||| |||| |||||| |||||||| |||||||| ||||
Sbjct 964 CTGTTTTTTGAGGCGTTTGTTCAGTCTATGATCAAGATGGGGAACATTA 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59588046915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5