BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487487
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06750.1 | Symbols: | Protein phosphatase 2C family protein... 2156 0.0
> AT5G06750.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:2086266-2088528 REVERSE LENGTH=1602
Length=1602
Score = 2156 bits (1167), Expect = 0.0
Identities = 1285/1341 (96%), Gaps = 12/1341 (1%)
Strand=Plus/Plus
Query 65 ttttttttttCTCAATCTCCGATTCGTTAACTCGTTTTCTCTCTTCACCTGTTTCAAGCT 124
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TTTTTGTTTTCGCAATCTCCGATTCGTTAACTCGTTTTCTCTCTTCACCTGTTTCAAGCT 185
Query 125 TTTCGATCCAACAAATCACGAGATTCATCTTTCCGGTCTGGTCTCCGGCGACCT--AA-A 181
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |
Sbjct 186 TTTCGATCCAACAAATCACGAGATTCCTCTTTCCGGTGTGGTCTCCGGCGACCTAAAATA 245
Query 182 AAGAGTTTATTCTCGT-G--GTGGAGAGCAAATGAGGGATGTTCTCCTGGTTAGCGAGAA 238
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AAGAGTTAATTCTCGTGGTCGTGGAGAGCAAATGAGGGATGTTCTCCTGGTTAGCGAGAA 305
Query 239 TGGCTCTTTTTTGTTTACGACCTATGCGTCGATACGGCCGTATGAACAGAgatgat---g 295
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 306 TGGCTCTTTTTTGTTTACGACCTATGCGGCGATACGGTCGTATGAACAGAGATGATGACG 365
Query 296 atgatgatgatCATGACGGTGA--C-TCTTCCTCCGGTGACTCGCTTCTTTGGTCTAGAG 352
||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 366 ATGATGATGATCACGACGGTGACTCTTCTTCCTCCGGTGACTCCCTTCTTTGGTCTAGAG 425
Query 353 AACTCGAGAGACATTCTTTCGGACATTTCTCTATTGCTGTTGTGCAAGCTAACGAGGTTA 412
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 426 AACTCGAGAGACATTCTTTCGGAGATTTCTCTATTGCTGTTGTGCAAGCTAACGAGGTTA 485
Query 413 TTGAAGATCATAGTCAAGTCGAGACCGGAAACGGTGCCGTTTTTGTCGGAGTCTACGATG 472
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 486 TTGAAGATCATAGTCAAGTCGAGACTGGAAACGGTGCCGTTTTCGTCGGAGTTTACGATG 545
Query 473 GTCATGGTGGTCCTGAAGCTTCTAGATACATCTCTGATCATCTCTTTTCTCATTTGATGA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GTCATGGTGGTCCTGAAGCTTCTAGATACATCTCTGATCATCTCTTTTCTCATTTGATGA 605
Query 533 GAGTTTCGAGAGAAAGGAGTTCTATCTCAGAGGAGACTCTGAGAGCTGCTTTTTCTGCTA 592
||||||||||||||||||||| ||| ||||||||| || | |||||||| ||||||||||
Sbjct 606 GAGTTTCGAGAGAAAGGAGTTGTATTTCAGAGGAGGCTTTAAGAGCTGCATTTTCTGCTA 665
Query 593 CAGAGGAAGGGTTTCTCACGCTTGTGCGAAGGACTTGCGGGTTAAAACCGTTGATTGCAG 652
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 666 CTGAGGAAGGGTTTCTCACGCTTGTGCGAAGGACTTGCGGGTTGAAACCGTTGATTGCAG 725
Query 653 CTGTTGGATCTTGTTGTTTGGTTGGAGTTATTTGGAAAGGGACTTTGCTTATCGCTAATG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CTGTTGGATCTTGTTGTTTGGTTGGAGTTATTTGGAAAGGGACTTTGCTTATCGCTAATG 785
Query 713 TTGGTGATTCTCGTGCTGTGCTTGGTTCCATGGGTAGTAATAATAGTAGGTCAAACAAGA 772
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 786 TTGGTGATTCTCGTGCTGTGCTTGGTTCCATGGGTAGTAATAATAATAGGTCAAACAAGA 845
Query 773 TTGTAGCTGAGCAATTGACAAGTGATCACAATGCTGCTTTGGAAGAAGTTAGACAAGAGG 832
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 846 TTGTAGCTGAGCAACTGACTAGTGATCACAATGCTGCTTTGGAAGAAGTTAGACAAGAGC 905
Query 833 TTAGGTCGTTGCATCCGGATGATCCGCATATCGTTGTTCTCAAACATGGTGTGTGGCGCA 892
|||||||||||||||| |||||| | ||||||||||| || |||||||||||||||||||
Sbjct 906 TTAGGTCGTTGCATCCTGATGATTCACATATCGTTGTCCTTAAACATGGTGTGTGGCGCA 965
Query 893 TCAAAGGCATCATTCAGGTATCTAGATCAATAGGGGATGCATACTTAAAGCGCCCAGAGT 952
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 966 TCAAAGGCATCATTCAGGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGT 1025
Query 953 TCTCTCTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAACAGCTACAAAGACCGGTTT 1012
|||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 1026 TCTCACTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAAGAACTACAAAGACCTGTTT 1085
Query 1013 TATCAGCAGAGCCTTCTGTCTACACAAGAGTCTTACAAACAAGTGACAAGTTTGTGATAT 1072
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TATCAGCAGAGCCTTGTGTCTACACAAGAGTCTTACAAACAAGTGACAAGTTTGTGATAT 1145
Query 1073 TCGCATCAGATGGACTCTGGGAACAAATGACCAACCAGCAAGCTGTAGAAATAGTGAATA 1132
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1146 TCGCATCAGATGGACTCTGGGAACAAATGACCAACCAGCAAGCTGTAGAGATAGTGAATA 1205
Query 1133 AACACCCTCGTCCTGGAATAGCTCGAAGGCTGGTGAGAAGAGCGATGACCATAGCTGCGA 1192
||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1206 AACACCCCCGTCCTGGAATAGCGAGAAGGCTGGTGAGAAGAGCGATAACCATAGCTGCGA 1265
Query 1193 AGAAGAGAGAGATGAATTACGATGATTTGAAGAAAGTGGAGAGAGGAGTGAGGAGATTCT 1252
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AAAAGAGAGAGATGAATTACGATGATTTGAAGAAAGTGGAGAGAGGAGTGAGGAGATTCT 1325
Query 1253 TTCATGATGATATAACGGTGGTTGTGATATTCATAGACAATGAGCTTCTTATGGTGGAGA 1312
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTCATGATGATATAACAGTGGTTGTGATATTCATAGACAATGAGCTTCTTATGGTGGAGA 1385
Query 1313 AAGCTACTGTTCCTGAATTGTCCATTAAAGGTTTTTCTCATACCGTTGGACCTTCCAAGT 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AAGCTACTGTTCCTGAATTGTCCATTAAAGGTTTTTCTCATACCGTTGGACCTTCCAAGT 1445
Query 1373 TCAGTATCTTCTTCTCTTAGA 1393
||||||||||| |||||||||
Sbjct 1446 TCAGTATCTTCCTCTCTTAGA 1466
Score = 122 bits (66), Expect = 7e-27
Identities = 79/85 (93%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1394 AAAAATGAACACGGATCGATTTTGTACCAACACGTTTGATTTTAGATACAAAATTGTAGG 1453
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1518 AAAAATGAACACGGATCGATTTTGTACCAACACGTTTGAGTTTAGATACAAAATTGTAGG 1577
Query 1454 TaaaaaaaTCTTTGAACTGGTCATT 1478
| || || || |||||||| |||||
Sbjct 1578 TTAATAA-TCCTTGAACTGCTCATT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72891191340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5