BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487492
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1219 0.0
> AT5G06790.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves
visible, petal differentiation and expansion stage, D
bilateral stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:2097669-2098740 REVERSE
LENGTH=1072
Length=1072
Score = 1219 bits (660), Expect = 0.0
Identities = 886/991 (89%), Gaps = 32/991 (3%)
Strand=Plus/Plus
Query 1 AGAGAGAGAATGGTAATGCCAC-CACTTAAATCAGCATCTTCTATGTCTTCTTCTCAATG 59
||||||||||||| |||||||| || | || || | |||||||||||||||||||||||
Sbjct 15 AGAGAGAGAATGGCAATGCCACTCAAATCAA-CATCTTCTTCTATGTCTTCTTCTCAATG 73
Query 60 TTCATCTTCTTCTTCACCAACCTCAAGCTCCATGAAACTCAAATCTCTAATCCAAACTCT 119
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 74 TTCATCTTCTTCTTCACCAACCTCAAGCTCCATGAAACTCAAATCCCTAATACAAACTCT 133
Query 120 CATCATTTCTCAAGTTTGTCGACTAATCCGAGAAATTTCTAGAGCTACATCCATTCTTGT 179
||||||||||||||||||||| ||| |||||||||| ||||||| | |||||||||||||
Sbjct 134 CATCATTTCTCAAGTTTGTCGGCTACTCCGAGAAATATCTAGAGTTTCATCCATTCTTGT 193
Query 180 TAGAGTCTTGAGAAAGAAGCAATACAATTTCTTGTCAGTGTCTTCTTTACTCTATCCAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TAGAGTCTTGAGAAAGAAGCAATACAATTTCTTGTCAGTGTCTTCTTTACTCTATCCAAA 253
Query 240 GAGAGTCTCTAAGAAACAAAAGAATAATATATTATTCGGCTCCTTCAGACTTCACTACAA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GAGAGTCTCAAAGAAACAAAAGAATAATATATTATTCGGCTCCTTCAGACTTCACTACAA 313
Query 300 CTTTTGCTCCTCTCACGTAGTGCCTGTCTCTGCACCAGTTCGGCTCCCGGAAGAGCTTTA 359
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 314 CTTTTGCTCCTCTCACGTAGTGCCTGTCTCTGCGCCAGTGCGTCTCCCGGAAGAGCTCTA 373
Query 360 CTTGGCTCATCTCGGATATGACTCTACTTGGGAGTCAATGTATTCAACGGATTCGATGGA 419
||| |||||||||| | | || || ||||||||||||||||| || || || || |||||
Sbjct 374 CTTAGCTCATCTCGTACACGAATCGACTTGGGAGTCAATGTACTCCACTGAATCCATGGA 433
Query 420 TAATCGCGATGATGATGATGGTGATATTCAAGAACCATCTCAGCTCTCTAGTTATCTAAG 479
| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 434 TGGTCGCGATGATGATGAT---------CAAGAACCATCTCAGCTCTCTAGCTATCTAAG 484
Query 480 ACAGCTAGAGGATAAAGTTAAAGATGGTCAAGAAGAAGATAAAGAGATGATGATGAACGA 539
|||||||||||||||||||||||| || |||||||| || | ||||| ||||||||| ||
Sbjct 485 ACAGCTAGAGGATAAAGTTAAAGACGGCCAAGAAGAGGAGACAGAGACGATGATGAATGA 544
Query 540 GATTGATAAATTGGCTGATATGTTTATAGCAAATTGTCATGAGAAGTTCATGTTGGAGAA 599
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 545 GATTGATAAATTGGCTGATAGGTTTATAGCAAATTGCCATGAGAAGTTCATGTTGGAGAA 604
Query 600 GGTTGATTCATATAGGAGATCCCAACAAACGCTGAATAGAAGCAGTTGATAATGATGATG 659
|||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||
Sbjct 605 AGTTGATTCATATAGGAGATCCCAAGGAACCCTGAATAGAAGCGGTTGATAACGATGATG 664
Query 660 AAGTGGCCTAAtttgtatctttcatttctttttatgtaatcccactttttccttcttctt 719
| | ||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 665 ATGGGGCCTAATTTGTATCTTTCATTTCTTTTTATGTGATTTCACTTTTTCCTTCTT-TT 723
Query 720 tttttttttt--CTTTTGA-ATT--TC-TTCAAAATTCTCTGAAAATGAGTATTGGAAGC 773
|| |||| || | | || | || || || |||||||||| |||||||||||
Sbjct 724 CTTCTTTTGAAACTCCTCACATGCATAGTTTGAA-TTATCTGAAAATGTGTATTGGAAGC 782
Query 774 ATAGGGG-AT--GGATTGTGTGGTGTTTGTTGTGTTACAATCTGATGATGATGATATTGA 830
|||||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 783 ATAGGGATATATGGATTGTGTGGTGTTTGTTGTGTTACAGTCTAATGATGATGATATTGA 842
Query 831 TGGTGGTGGTTTATAAACTAGAACAGAC-A--GTCCAAAAAGGAAAAGAGAGGATGCAAA 887
||||||||||||||||||||||| |||| | |||||||||||| |||||||||| ||||
Sbjct 843 TGGTGGTGGTTTATAAACTAGAATAGACGACAGTCCAAAAAGGAGAAGAGAGGATACAAA 902
Query 888 TGGAATGGATTTTTGTAACTTTGGCTTTTGTGGTTTA--A-GTTCTTTTGTTACTATATA 944
||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 903 TGGAATGGATTTTTGTAACTTTGGCTTTTGTGGTTTATGACGTTCTTTTGCTACTAT--- 959
Query 945 TCTTCTGATATTGTTGTTTTCTTTTGTTTGT 975
||||||||||||||||||||||||| ||||
Sbjct 960 -CTTCTGATATTGTTGTTTTCTTTTGGTTGT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5